Literature DB >> 19741702

Chromosome crosstalk in three dimensions.

Anita Göndör1, Rolf Ohlsson.   

Abstract

The genome forms extensive and dynamic physical interactions with itself in the form of chromosome loops and bridges, thus exploring the three-dimensional space of the nucleus. It is now possible to examine these interactions at the molecular level, and we have gained glimpses of their functional implications. Chromosomal interactions can contribute to the silencing and activation of genes within the three-dimensional context of the nuclear architecture. Technical advances in detecting these interactions contribute to our understanding of the functional organization of the genome, as well as its adaptive plasticity in response to environmental changes during development and disease.

Mesh:

Year:  2009        PMID: 19741702     DOI: 10.1038/nature08453

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  69 in total

1.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

2.  CTCF-dependent chromatin insulator is linked to epigenetic remodeling.

Authors:  Ko Ishihara; Mitsuo Oshimura; Mitsuyoshi Nakao
Journal:  Mol Cell       Date:  2006-09-01       Impact factor: 17.970

3.  Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Authors:  Zhihu Zhao; Gholamreza Tavoosidana; Mikael Sjölinder; Anita Göndör; Piero Mariano; Sha Wang; Chandrasekhar Kanduri; Magda Lezcano; Kuljeet Singh Sandhu; Umashankar Singh; Vinod Pant; Vijay Tiwari; Sreenivasulu Kurukuti; Rolf Ohlsson
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

4.  Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.

Authors:  Irina Solovei; Moritz Kreysing; Christian Lanctôt; Süleyman Kösem; Leo Peichl; Thomas Cremer; Jochen Guck; Boris Joffe
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

5.  Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression.

Authors:  Effie Apostolou; Dimitris Thanos
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

6.  The role of the polycomb complex in silencing alpha-globin gene expression in nonerythroid cells.

Authors:  David Garrick; Marco De Gobbi; Vasiliki Samara; Michelle Rugless; Michelle Holland; Helena Ayyub; Karen Lower; Jackie Sloane-Stanley; Nicki Gray; Christoph Koch; Ian Dunham; Douglas R Higgs
Journal:  Blood       Date:  2008-08-08       Impact factor: 22.113

Review 7.  Macromolecular crowding and its potential impact on nuclear function.

Authors:  Karsten Richter; Michelle Nessling; Peter Lichter
Journal:  Biochim Biophys Acta       Date:  2008-07-30

8.  De novo formation of a subnuclear body.

Authors:  Trish E Kaiser; Robert V Intine; Miroslav Dundr
Journal:  Science       Date:  2008-10-23       Impact factor: 47.728

9.  A distal single nucleotide polymorphism alters long-range regulation of the PU.1 gene in acute myeloid leukemia.

Authors:  Ulrich Steidl; Christian Steidl; Alexander Ebralidze; Björn Chapuy; Hye-Jung Han; Britta Will; Frank Rosenbauer; Annegret Becker; Katharina Wagner; Steffen Koschmieder; Susumu Kobayashi; Daniel B Costa; Thomas Schulz; Karen B O'Brien; Roel G W Verhaak; Ruud Delwel; Detlef Haase; Lorenz Trümper; Jürgen Krauter; Terumi Kohwi-Shigematsu; Frank Griesinger; Daniel G Tenen
Journal:  J Clin Invest       Date:  2007-09       Impact factor: 14.808

10.  Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data.

Authors:  Per Unneberg; Jean-Michel Claverie
Journal:  PLoS One       Date:  2007-02-28       Impact factor: 3.240

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  74 in total

1.  Functional nuclear topography of transcriptionally inducible extra-chromosomal transgene clusters.

Authors:  Manja Meggendorfer; Claudia Weierich; Horst Wolff; Ruth Brack-Werner; Thomas Cremer
Journal:  Chromosome Res       Date:  2010-06-08       Impact factor: 5.239

2.  Integrating one-dimensional and three-dimensional maps of genomes.

Authors:  Natalia Naumova; Job Dekker
Journal:  J Cell Sci       Date:  2010-06-15       Impact factor: 5.285

Review 3.  Heterochromatin instability in cancer: from the Barr body to satellites and the nuclear periphery.

Authors:  Dawn M Carone; Jeanne B Lawrence
Journal:  Semin Cancer Biol       Date:  2012-06-18       Impact factor: 15.707

4.  Comparing enhancer action in cis and in trans.

Authors:  Jack R Bateman; Justine E Johnson; Melissa N Locke
Journal:  Genetics       Date:  2012-05-29       Impact factor: 4.562

5.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

6.  Did the modulation of expression noise shape the evolution of three dimensional genome organizations in eukaryotes?

Authors:  Kuljeet Singh Sandhu
Journal:  Nucleus       Date:  2012-05-01       Impact factor: 4.197

7.  Genomic and proteomic analyses of Prdm5 reveal interactions with insulator binding proteins in embryonic stem cells.

Authors:  Giorgio Giacomo Galli; Matteo Carrara; Chiara Francavilla; Kristian Honnens de Lichtenberg; Jesper Velgaard Olsen; Raffaele Adolfo Calogero; Anders Henrik Lund
Journal:  Mol Cell Biol       Date:  2013-09-16       Impact factor: 4.272

8.  Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development.

Authors:  Kuljeet Singh Sandhu; Chengxi Shi; Mikael Sjölinder; Zhihu Zhao; Anita Göndör; Liang Liu; Vijay K Tiwari; Sylvain Guibert; Lina Emilsson; Marta P Imreh; Rolf Ohlsson
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

9.  Similar rye A and B chromosome organization in meristematic and differentiated interphase nuclei.

Authors:  Veit Schubert; Armin Meister; Hisashi Tsujimoto; Takashi Ryu Endo; Andreas Houben
Journal:  Chromosome Res       Date:  2011-06-15       Impact factor: 5.239

10.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

Authors:  Jakob Lovén; Heather A Hoke; Charles Y Lin; Ashley Lau; David A Orlando; Christopher R Vakoc; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

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