Literature DB >> 22245832

A new branch on the tree: next-generation sequencing in the study of cancer evolution.

Jacqueline A Brosnan1, Christine A Iacobuzio-Donahue.   

Abstract

Cancer is a disease caused by the accumulation of genetic alterations in association with successive waves of clonal expansion. Mapping of the human genome sequence, in conjunction with technical advances in the ability to sequence entire genomes, have provided new insight into the mutational spectra and genetic events associated with clonal evolution of cancer. Moving forward, a clearer understanding of those alterations that undergo positive and negative selection throughout carcinogenesis and leading to metastatic dissemination would provide a boon not only to our understanding of cancer evolution, but to the development of potential targets for therapeutic intervention as well.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID： 22245832      PMCID： PMC3314157          DOI： 10.1016/j.semcdb.2011.12.008

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN： 1084-9521            Impact factor:   7.727


  55 in total

1.  Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing.

Authors:  Roman K Thomas; Elizabeth Nickerson; Jan F Simons; Pasi A Jänne; Torstein Tengs; Yuki Yuza; Levi A Garraway; Thomas LaFramboise; Jeffrey C Lee; Kinjal Shah; Keith O'Neill; Hidefumi Sasaki; Neal Lindeman; Kwok-Kin Wong; Ana M Borras; Edward J Gutmann; Konstantin H Dragnev; Ralph DeBiasi; Tzu-Hsiu Chen; Karen A Glatt; Heidi Greulich; Brian Desany; Christine K Lubeski; William Brockman; Pablo Alvarez; Stephen K Hutchison; J H Leamon; Michael T Ronan; Gregory S Turenchalk; Michael Egholm; William R Sellers; Jonathan M Rothberg; Matthew Meyerson
Journal:  Nat Med       Date:  2006-06-25       Impact factor: 53.440

2.  Genetic evolution in the metastatic progression of human pancreatic cancer studied by CGH.

Authors:  G Armengol; G Capellà; L Farré; M A Peinado; R Miró; M R Caballín
Journal:  Lab Invest       Date:  2001-12       Impact factor: 5.662

3.  Genetic pattern of prostate cancer progression.

Authors:  T Saric; Z Brkanac; D A Troyer; S S Padalecki; M Sarosdy; K Williams; L Abadesco; R J Leach; P O'Connell
Journal:  Int J Cancer       Date:  1999-04-12       Impact factor: 7.396

4.  The patterns and dynamics of genomic instability in metastatic pancreatic cancer.

Authors:  Peter J Campbell; Shinichi Yachida; Laura J Mudie; Philip J Stephens; Erin D Pleasance; Lucy A Stebbings; Laura A Morsberger; Calli Latimer; Stuart McLaren; Meng-Lay Lin; David J McBride; Ignacio Varela; Serena A Nik-Zainal; Catherine Leroy; Mingming Jia; Andrew Menzies; Adam P Butler; Jon W Teague; Constance A Griffin; John Burton; Harold Swerdlow; Michael A Quail; Michael R Stratton; Christine Iacobuzio-Donahue; P Andrew Futreal
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

5.  Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.

Authors:  Siân Jones; Tian-Li Wang; Ie-Ming Shih; Tsui-Lien Mao; Kentaro Nakayama; Richard Roden; Ruth Glas; Dennis Slamon; Luis A Diaz; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu; Nickolas Papadopoulos
Journal:  Science       Date:  2010-09-08       Impact factor: 47.728

6.  Second generation sequencing of the mesothelioma tumor genome.

Authors:  Raphael Bueno; Assunta De Rienzo; Lingsheng Dong; Gavin J Gordon; Colin F Hercus; William G Richards; Roderick V Jensen; Arif Anwar; Gautam Maulik; Lucian R Chirieac; Kim-Fong Ho; Bruce E Taillon; Cynthia L Turcotte; Robert G Hercus; Steven R Gullans; David J Sugarbaker
Journal:  PLoS One       Date:  2010-05-13       Impact factor: 3.240

7.  Chromosomal alterations in lung metastases of colorectal carcinomas: associations with tissue specific tumor dissemination.

Authors:  Thomas Knösel; Karsten Schlüns; Manfred Dietel; Iver Petersen
Journal:  Clin Exp Metastasis       Date:  2006-02-11       Impact factor: 5.150

8.  Increasing metastatic potential is associated with increasing genetic instability of clones isolated from murine neoplasms.

Authors:  M A Cifone; I J Fidler
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

9.  From latent disseminated cells to overt metastasis: genetic analysis of systemic breast cancer progression.

Authors:  Oleg Schmidt-Kittler; Thomas Ragg; Angela Daskalakis; Martin Granzow; Andre Ahr; Thomas J F Blankenstein; Manfred Kaufmann; Joachim Diebold; Hans Arnholdt; Peter Muller; Joachim Bischoff; Detlev Harich; Gunter Schlimok; Gert Riethmuller; Roland Eils; Christoph A Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

10.  Tumor spreading to the contralateral ovary in bilateral ovarian carcinoma is a late event in clonal evolution.

Authors:  Francesca Micci; Lisbeth Haugom; Terje Ahlquist; Vera M Abeler; Claes G Trope; Ragnhild A Lothe; Sverre Heim
Journal:  J Oncol       Date:  2009-09-15       Impact factor: 4.375
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  16 in total

1.  Impact of tumor progression on cancer incidence curves.

Authors:  E Georg Luebeck; Kit Curtius; Jihyoun Jeon; William D Hazelton
Journal:  Cancer Res       Date:  2012-10-10       Impact factor: 12.701

2.  Hotspot mutation panel testing reveals clonal evolution in a study of 265 paired primary and metastatic tumors.

Authors:  Rashmi S Goswami; Keyur P Patel; Rajesh R Singh; Funda Meric-Bernstam; E Scott Kopetz; Vivek Subbiah; Ricardo H Alvarez; Michael A Davies; Kausar J Jabbar; Sinchita Roy-Chowdhuri; Alexander J Lazar; L Jeffrey Medeiros; Russell R Broaddus; Rajyalakshmi Luthra; Mark J Routbort
Journal:  Clin Cancer Res       Date:  2015-02-18       Impact factor: 12.531

3.  Transcriptomic profiling on localized gastric cancer identified CPLX1 as a gene promoting malignant phenotype of gastric cancer and a predictor of recurrence after surgery and subsequent chemotherapy.

Authors:  Haruyoshi Tanaka; Mitsuro Kanda; Dai Shimizu; Chie Tanaka; Yoshikuni Inokawa; Norifumi Hattori; Masamichi Hayashi; Goro Nakayama; Yasuhiro Kodera
Journal:  J Gastroenterol       Date:  2022-06-21       Impact factor: 6.772

Review 4.  Pancreatic cancer biology and genetics from an evolutionary perspective.

Authors:  Alvin Makohon-Moore; Christine A Iacobuzio-Donahue
Journal:  Nat Rev Cancer       Date:  2016-07-22       Impact factor: 60.716

5.  How do mammalian transposons induce genetic variation? A conceptual framework: the age, structure, allele frequency, and genome context of transposable elements may define their wide-ranging biological impacts.

Authors:  Keiko Akagi; Jingfeng Li; David E Symer
Journal:  Bioessays       Date:  2013-01-14       Impact factor: 4.345

Review 6.  Targeting metastasis.

Authors:  Patricia S Steeg
Journal:  Nat Rev Cancer       Date:  2016-04       Impact factor: 60.716

7.  G-protein subunit gamma-4 expression has potential for detection, prediction and therapeutic targeting in liver metastasis of gastric cancer.

Authors:  Haruyoshi Tanaka; Mitsuro Kanda; Takashi Miwa; Shinichi Umeda; Koichi Sawaki; Chie Tanaka; Daisuke Kobayashi; Masamichi Hayashi; Suguru Yamada; Goro Nakayama; Masahiko Koike; Yasuhiro Kodera
Journal:  Br J Cancer       Date:  2021-04-14       Impact factor: 7.640

Review 8.  PhyloOncology: Understanding cancer through phylogenetic analysis.

Authors:  Jason A Somarelli; Kathryn E Ware; Rumen Kostadinov; Jeffrey M Robinson; Hakima Amri; Mones Abu-Asab; Nicolaas Fourie; Rui Diogo; David Swofford; Jeffrey P Townsend
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2016-10-31       Impact factor: 11.414

9.  DNA qualification workflow for next generation sequencing of histopathological samples.

Authors:  Michele Simbolo; Marisa Gottardi; Vincenzo Corbo; Matteo Fassan; Andrea Mafficini; Giorgio Malpeli; Rita T Lawlor; Aldo Scarpa
Journal:  PLoS One       Date:  2013-06-06       Impact factor: 3.240

10.  Next generation sequencing in cancer research and clinical application.

Authors:  Derek Shyr; Qi Liu
Journal:  Biol Proced Online       Date:  2013-02-13       Impact factor: 3.244
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