Literature DB >> 22243584

The tmRNA ribosome-rescue system.

Brian D Janssen1, Christopher S Hayes.   

Abstract

The bacterial tmRNA quality control system monitors protein synthesis and recycles stalled translation complexes in a process termed "ribosome rescue." During rescue, tmRNA acts first as a transfer RNA to bind stalled ribosomes, then as a messenger RNA to add the ssrA peptide tag to the C-terminus of the nascent polypeptide chain. The ssrA peptide targets tagged peptides for proteolysis, ensuring rapid degradation of potentially deleterious truncated polypeptides. Ribosome rescue also facilitates turnover of the damaged messages responsible for translational arrest. Thus, tmRNA increases the fidelity of gene expression by promoting the synthesis of full-length proteins. In addition to serving as a global quality control system, tmRNA also plays important roles in bacterial development, pathogenesis, and environmental stress responses. This review focuses on the mechanism of tmRNA-mediated ribosome rescue and the role of tmRNA in bacterial physiology.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22243584      PMCID: PMC3358797          DOI: 10.1016/B978-0-12-386497-0.00005-0

Source DB:  PubMed          Journal:  Adv Protein Chem Struct Biol        ISSN: 1876-1623            Impact factor:   3.507


  202 in total

1.  SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity.

Authors:  E D Roche; R T Sauer
Journal:  EMBO J       Date:  1999-08-16       Impact factor: 11.598

2.  The ribosomal exit tunnel functions as a discriminating gate.

Authors:  Hitoshi Nakatogawa; Koreaki Ito
Journal:  Cell       Date:  2002-03-08       Impact factor: 41.582

3.  Transfer-messenger RNA unfolds as it transits the ribosome.

Authors:  Iwona K Wower; Christian Zwieb; Jacek Wower
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

4.  The transcription factor DksA prevents conflicts between DNA replication and transcription machinery.

Authors:  Ashley K Tehranchi; Matthew D Blankschien; Yan Zhang; Jennifer A Halliday; Anjana Srivatsan; Jia Peng; Christophe Herman; Jue D Wang
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

5.  Significant bias against the ACA triplet in the tmRNA sequence of Escherichia coli K-12.

Authors:  Sarah Baik; Koichi Inoue; Ming Ouyang; Masayori Inouye
Journal:  J Bacteriol       Date:  2009-07-24       Impact factor: 3.490

6.  10Sa RNA complements the temperature-sensitive phenotype caused by a mutation in the phosphoribosyl pyrophosphate synthetase (prs) gene in Escherichia coli.

Authors:  H Ando; M Kitabatake; H Inokuchi
Journal:  Genes Genet Syst       Date:  1996-02       Impact factor: 1.517

7.  SmpB triggers GTP hydrolysis of elongation factor Tu on ribosomes by compensating for the lack of codon-anticodon interaction during trans-translation initiation.

Authors:  Yoshihiro Shimizu; Takuya Ueda
Journal:  J Biol Chem       Date:  2006-04-06       Impact factor: 5.157

8.  Proline residues at the C terminus of nascent chains induce SsrA tagging during translation termination.

Authors:  Christopher S Hayes; Baundauna Bose; Robert T Sauer
Journal:  J Biol Chem       Date:  2002-07-08       Impact factor: 5.157

9.  Co-evolution of multipartite interactions between an extended tmRNA tag and a robust Lon protease in Mycoplasma.

Authors:  Zhiyun Ge; A Wali Karzai
Journal:  Mol Microbiol       Date:  2009-11-13       Impact factor: 3.501

10.  Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons.

Authors:  Pavel V Baranov; Bente Vestergaard; Thomas Hamelryck; Raymond F Gesteland; Jens Nyborg; John F Atkins
Journal:  Biol Direct       Date:  2006-09-13       Impact factor: 4.540

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  51 in total

1.  Novel role for RNase PH in the degradation of structured RNA.

Authors:  Chaitanya Jain
Journal:  J Bacteriol       Date:  2012-05-18       Impact factor: 3.490

Review 2.  Regulation of bacterial gene expression by ribosome stalling and rescuing.

Authors:  Yongxin Jin; Shouguang Jin; Weihui Wu
Journal:  Curr Genet       Date:  2015-11-26       Impact factor: 3.886

3.  Active and accurate trans-translation requires distinct determinants in the C-terminal tail of SmpB protein and the mRNA-like domain of transfer messenger RNA (tmRNA).

Authors:  Devin Camenares; Daniel P Dulebohn; Anton Svetlanov; A Wali Karzai
Journal:  J Biol Chem       Date:  2013-08-28       Impact factor: 5.157

4.  Nascent peptides that block protein synthesis in bacteria.

Authors:  Christopher J Woolstenhulme; Shankar Parajuli; David W Healey; Diana P Valverde; E Nicholas Petersen; Agata L Starosta; Nicholas R Guydosh; W Evan Johnson; Daniel N Wilson; Allen R Buskirk
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-19       Impact factor: 11.205

5.  Alanine Tails Signal Proteolysis in Bacterial Ribosome-Associated Quality Control.

Authors:  Iryna Lytvynenko; Helge Paternoga; Anna Thrun; Annika Balke; Tina A Müller; Christina H Chiang; Katja Nagler; George Tsaprailis; Simon Anders; Ilka Bischofs; Julie A Maupin-Furlow; Christian M T Spahn; Claudio A P Joazeiro
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

6.  Are proposed early genetic codes capable of encoding viable proteins?

Authors:  Annamária Franciska Angyán; Csaba Ortutay; Zoltán Gáspári
Journal:  J Mol Evol       Date:  2014-05-15       Impact factor: 2.395

7.  Translation efficiency is maintained at elevated temperature in Escherichia coli.

Authors:  Gareth J Morgan; David H Burkhardt; Jeffery W Kelly; Evan T Powers
Journal:  J Biol Chem       Date:  2017-11-28       Impact factor: 5.157

8.  How metal cofactors drive dimer-dodecamer transition of the M42 aminopeptidase TmPep1050 of Thermotoga maritima.

Authors:  Raphaël Dutoit; Tom Van Gompel; Nathalie Brandt; Dany Van Elder; Jeroen Van Dyck; Frank Sobott; Louis Droogmans
Journal:  J Biol Chem       Date:  2019-10-14       Impact factor: 5.157

Review 9.  The bacterial translation stress response.

Authors:  Agata L Starosta; Jürgen Lassak; Kirsten Jung; Daniel N Wilson
Journal:  FEMS Microbiol Rev       Date:  2014-09-26       Impact factor: 16.408

Review 10.  Phosphoribosyl Diphosphate (PRPP): Biosynthesis, Enzymology, Utilization, and Metabolic Significance.

Authors:  Bjarne Hove-Jensen; Kasper R Andersen; Mogens Kilstrup; Jan Martinussen; Robert L Switzer; Martin Willemoës
Journal:  Microbiol Mol Biol Rev       Date:  2016-12-28       Impact factor: 11.056

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