Literature DB >> 23440350

tRNA residues evolved to promote translational accuracy.

Irina Shepotinovskaya1, Olke C Uhlenbeck.   

Abstract

The decoding properties of 22 structurally conservative base-pair and base-triple mutations in the anticodon hairpin and tertiary core of Escherichia coli tRNA(Ala)GGC were determined under single turnover conditions using E. coli ribosomes. While all of the mutations were able to efficiently decode the cognate GCC codon, many showed substantial misreading of near-cognate GUC or ACC codons. Although all the misreading mutations were present in the sequences of other E. coli tRNAs, they were never found among bacterial tRNA(Ala)GGC sequences. This suggests that the sequences of bacterial tRNA(Ala)GGC have evolved to avoid reading incorrect codons.

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Year:  2013        PMID: 23440350      PMCID: PMC3677261          DOI: 10.1261/rna.036038.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  45 in total

1.  Selection of tRNA by the ribosome requires a transition from an open to a closed form.

Authors:  James M Ogle; Frank V Murphy; Michael J Tarry; V Ramakrishnan
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

2.  Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting.

Authors:  Jaunius Urbonavicius; Guillaume Stahl; Jérôme M B Durand; Samia N Ben Salem; Qiang Qian; Philip J Farabaugh; Glenn R Björk
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

3.  A twisted tRNA intermediate sets the threshold for decoding.

Authors:  Michael Yarus; Mikel Valle; Joachim Frank
Journal:  RNA       Date:  2003-04       Impact factor: 4.942

4.  Anticodon-dependent conservation of bacterial tRNA gene sequences.

Authors:  Margaret E Saks; John S Conery
Journal:  RNA       Date:  2007-03-22       Impact factor: 4.942

5.  [3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation.

Authors:  Sarah Ledoux; Olke C Uhlenbeck
Journal:  Methods       Date:  2008-02       Impact factor: 3.608

6.  Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications.

Authors:  Paul F Agris
Journal:  EMBO Rep       Date:  2008-06-13       Impact factor: 8.807

7.  Perturbation of the tRNA tertiary core differentially affects specific steps of the elongation cycle.

Authors:  Dongli Pan; Chun-Mei Zhang; Stanislav Kirillov; Ya-Ming Hou; Barry S Cooperman
Journal:  J Biol Chem       Date:  2008-04-30       Impact factor: 5.157

8.  Analysis of genomic tRNA sets from Bacteria, Archaea, and Eukarya points to anticodon-codon hydrogen bonds as a major determinant of tRNA compositional variations.

Authors:  Ilia Targanski; Vera Cherkasova
Journal:  RNA       Date:  2008-04-25       Impact factor: 4.942

9.  Improvement of reading frame maintenance is a common function for several tRNA modifications.

Authors:  J Urbonavicius; Q Qian; J M Durand; T G Hagervall; G R Björk
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

10.  Different aa-tRNAs are selected uniformly on the ribosome.

Authors:  Sarah Ledoux; Olke C Uhlenbeck
Journal:  Mol Cell       Date:  2008-07-11       Impact factor: 17.970

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  9 in total

Review 1.  Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology.

Authors:  Assaf Katz; Sara Elgamal; Andrei Rajkovic; Michael Ibba
Journal:  Mol Microbiol       Date:  2016-06-28       Impact factor: 3.501

2.  Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.

Authors:  Liana F Lareau; Dustin H Hite; Gregory J Hogan; Patrick O Brown
Journal:  Elife       Date:  2014-05-09       Impact factor: 8.140

Review 3.  Factors That Shape Eukaryotic tRNAomes:  Processing, Modification and Anticodon-Codon Use.

Authors:  Richard J Maraia; Aneeshkumar G Arimbasseri
Journal:  Biomolecules       Date:  2017-03-08

4.  Widespread temperature sensitivity and tRNA decay due to mutations in a yeast tRNA.

Authors:  Matthew J Payea; Michael F Sloma; Yoshiko Kon; David L Young; Michael P Guy; Xiaoju Zhang; Thareendra De Zoysa; Stanley Fields; David H Mathews; Eric M Phizicky
Journal:  RNA       Date:  2017-12-19       Impact factor: 4.942

Review 5.  Versatility of Synthetic tRNAs in Genetic Code Expansion.

Authors:  Kyle S Hoffman; Ana Crnković; Dieter Söll
Journal:  Genes (Basel)       Date:  2018-11-07       Impact factor: 4.096

6.  Novel Structural Variation and Evolutionary Characteristics of Chloroplast tRNA in Gossypium Plants.

Authors:  Ting-Ting Zhang; Yang Yang; Xiao-Yu Song; Xin-Yu Gao; Xian-Liang Zhang; Jun-Jie Zhao; Ke-Hai Zhou; Chang-Bao Zhao; Wei Li; Dai-Gang Yang; Xiong-Feng Ma; Zhong-Hu Li
Journal:  Genes (Basel)       Date:  2021-05-27       Impact factor: 4.096

7.  Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis.

Authors:  Michael P Guy; David L Young; Matthew J Payea; Xiaoju Zhang; Yoshiko Kon; Kimberly M Dean; Elizabeth J Grayhack; David H Mathews; Stanley Fields; Eric M Phizicky
Journal:  Genes Dev       Date:  2014-08-01       Impact factor: 11.361

Review 8.  An integrated, structure- and energy-based view of the genetic code.

Authors:  Henri Grosjean; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2016-07-22       Impact factor: 16.971

Review 9.  Review: Translational GTPases.

Authors:  Cristina Maracci; Marina V Rodnina
Journal:  Biopolymers       Date:  2016-08       Impact factor: 2.505

  9 in total

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