Literature DB >> 22242730

Visualizing cell architecture and molecular location using soft x-ray tomography and correlated cryo-light microscopy.

Gerry McDermott1, Mark A Le Gros, Carolyn A Larabell.   

Abstract

Living cells are structured to create a range of microenvironments that support specific chemical reactions and processes. Understanding how cells function therefore requires detailed knowledge of both the subcellular architecture and the location of specific molecules within this framework. Here we review the development of two correlated cellular imaging techniques that fulfill this need. Cells are first imaged using cryogenic fluorescence microscopy to determine the location of molecules of interest that have been labeled with fluorescent tags. The same specimen is then imaged using soft X-ray tomography to generate a high-contrast, 3D reconstruction of the cells. Data from the two modalities are then combined to produce a composite, information-rich view of the cell. This correlated imaging approach can be applied across the spectrum of problems encountered in cell biology, from basic research to biotechnological and biomedical applications such as the optimization of biofuels and the development of new pharmaceuticals.

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Mesh:

Year:  2012        PMID: 22242730      PMCID: PMC3349341          DOI: 10.1146/annurev-physchem-032511-143818

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  46 in total

1.  Three-dimensional cellular ultrastructure resolved by X-ray microscopy.

Authors:  Gerd Schneider; Peter Guttmann; Stefan Heim; Stefan Rehbein; Florian Mueller; Kunio Nagashima; J Bernard Heymann; Waltraud G Müller; James G McNally
Journal:  Nat Methods       Date:  2010-11-14       Impact factor: 28.547

Review 2.  Building and breeding molecules to spy on cells and tumors.

Authors:  Roger Y Tsien
Journal:  FEBS Lett       Date:  2005-02-07       Impact factor: 4.124

3.  Soft X-ray microscopy at a spatial resolution better than 15 nm.

Authors:  Weilun Chao; Bruce D Harteneck; J Alexander Liddle; Erik H Anderson; David T Attwood
Journal:  Nature       Date:  2005-06-30       Impact factor: 49.962

Review 4.  Advances in fluorescent protein technology.

Authors:  Nathan C Shaner; George H Patterson; Michael W Davidson
Journal:  J Cell Sci       Date:  2007-12-15       Impact factor: 5.285

Review 5.  Structural systems biology: modelling protein interactions.

Authors:  Patrick Aloy; Robert B Russell
Journal:  Nat Rev Mol Cell Biol       Date:  2006-03       Impact factor: 94.444

Review 6.  Visualizing cells at the nanoscale.

Authors:  Andrew Leis; Beate Rockel; Lars Andrees; Wolfgang Baumeister
Journal:  Trends Biochem Sci       Date:  2008-12-26       Impact factor: 13.807

Review 7.  Microscopic imaging techniques for drug discovery.

Authors:  Andrew Bullen
Journal:  Nat Rev Drug Discov       Date:  2008-01       Impact factor: 84.694

Review 8.  Soft X-ray microscopes and their biological applications.

Authors:  J Kirz; C Jacobsen; M Howells
Journal:  Q Rev Biophys       Date:  1995-02       Impact factor: 5.318

9.  Novel chromophores and buried charges control color in mFruits.

Authors:  Xiaokun Shu; Nathan C Shaner; Corinne A Yarbrough; Roger Y Tsien; S James Remington
Journal:  Biochemistry       Date:  2006-08-15       Impact factor: 3.162

Review 10.  Imaging cellular architecture with X-rays.

Authors:  Carolyn A Larabell; Keith A Nugent
Journal:  Curr Opin Struct Biol       Date:  2010-09-24       Impact factor: 6.809

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  20 in total

Review 1.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

2.  Further closing the resolution gap: integrating cryo-soft x-ray and light microscopies.

Authors:  Dorit Hanein
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

3.  Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies.

Authors:  Elizabeth A Smith; Gerry McDermott; Myan Do; Karen Leung; Barbara Panning; Mark A Le Gros; Carolyn A Larabell
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

4.  Biological soft X-ray tomography on beamline 2.1 at the Advanced Light Source.

Authors:  Mark A Le Gros; Gerry McDermott; Bertrand P Cinquin; Elizabeth A Smith; Myan Do; Weilun L Chao; Patrick P Naulleau; Carolyn A Larabell
Journal:  J Synchrotron Radiat       Date:  2014-10-01       Impact factor: 2.616

Review 5.  Correlative cryogenic tomography of cells using light and soft x-rays.

Authors:  Elizabeth A Smith; Bertrand P Cinquin; Myan Do; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Ultramicroscopy       Date:  2013-11-07       Impact factor: 2.689

Review 6.  Assaying three-dimensional cellular architecture using X-ray tomographic and correlated imaging approaches.

Authors:  Peter O Bayguinov; Max R Fisher; James A J Fitzpatrick
Journal:  J Biol Chem       Date:  2020-09-16       Impact factor: 5.157

7.  Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo.

Authors:  Mark A Le Gros; E Josephine Clowney; Angeliki Magklara; Angela Yen; Eirene Markenscoff-Papadimitriou; Bradley Colquitt; Markko Myllys; Manolis Kellis; Stavros Lomvardas; Carolyn A Larabell
Journal:  Cell Rep       Date:  2016-11-15       Impact factor: 9.423

Review 8.  Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Authors:  Axel A Ekman; Jian-Hua Chen; Jessica Guo; Gerry McDermott; Mark A Le Gros; Carolyn A Larabell
Journal:  Biol Cell       Date:  2016-11-14       Impact factor: 4.458

9.  Correlative microscopy methods that maximize specimen fidelity and data completeness, and improve molecular localization capabilities.

Authors:  Elizabeth A Smith; Bertrand P Cinquin; Gerry McDermott; Mark A Le Gros; Dilworth Y Parkinson; Hong Tae Kim; Carolyn A Larabell
Journal:  J Struct Biol       Date:  2013-03-24       Impact factor: 2.867

10.  Putting molecules in their place.

Authors:  Bertrand P Cinquin; Myan Do; Gerry McDermott; Alison D Walters; Markko Myllys; Elizabeth A Smith; Orna Cohen-Fix; Mark A Le Gros; Carolyn A Larabell
Journal:  J Cell Biochem       Date:  2014-02       Impact factor: 4.429

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