Literature DB >> 16496021

Structural systems biology: modelling protein interactions.

Patrick Aloy1, Robert B Russell.   

Abstract

Much of systems biology aims to predict the behaviour of biological systems on the basis of the set of molecules involved. Understanding the interactions between these molecules is therefore crucial to such efforts. Although many thousands of interactions are known, precise molecular details are available for only a tiny fraction of them. The difficulties that are involved in experimentally determining atomic structures for interacting proteins make predictive methods essential for progress. Structural details can ultimately turn abstract system representations into models that more accurately reflect biological reality.

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Year:  2006        PMID: 16496021     DOI: 10.1038/nrm1859

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  109 in total

1.  Templates are available to model nearly all complexes of structurally characterized proteins.

Authors:  Petras J Kundrotas; Zhengwei Zhu; Joël Janin; Ilya A Vakser
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

2.  The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.

Authors:  Florian Leitner; Andrew Chatr-aryamontri; Scott A Mardis; Arnaud Ceol; Martin Krallinger; Luana Licata; Lynette Hirschman; Gianni Cesareni; Alfonso Valencia
Journal:  Nat Biotechnol       Date:  2010-09       Impact factor: 54.908

3.  Prediction of structures of multidomain proteins from structures of the individual domains.

Authors:  Andrew M Wollacott; Alexandre Zanghellini; Paul Murphy; David Baker
Journal:  Protein Sci       Date:  2006-12-22       Impact factor: 6.725

4.  Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions.

Authors:  Raja Jothi; Praveen F Cherukuri; Asba Tasneem; Teresa M Przytycka
Journal:  J Mol Biol       Date:  2006-08-01       Impact factor: 5.469

Review 5.  Structural systems biology and multiscale signaling models.

Authors:  Shannon E Telesco; Ravi Radhakrishnan
Journal:  Ann Biomed Eng       Date:  2012-04-27       Impact factor: 3.934

6.  Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry.

Authors:  Haizhen Zhang; Xiaoting Tang; Gerhard R Munske; Nikola Tolic; Gordon A Anderson; James E Bruce
Journal:  Mol Cell Proteomics       Date:  2008-10-20       Impact factor: 5.911

7.  FRODOCK: a new approach for fast rotational protein-protein docking.

Authors:  José Ignacio Garzon; José Ramón Lopéz-Blanco; Carles Pons; Julio Kovacs; Ruben Abagyan; Juan Fernandez-Recio; Pablo Chacon
Journal:  Bioinformatics       Date:  2009-07-20       Impact factor: 6.937

Review 8.  On the relevance of defining protein structures in cancer research.

Authors:  Inés G Muñoz; Franciso J Blanco; Guillermo Montoya
Journal:  Clin Transl Oncol       Date:  2008-04       Impact factor: 3.405

9.  Robust protein protein interactions in crowded cellular environments.

Authors:  Eric J Deeds; Orr Ashenberg; Jaline Gerardin; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-11       Impact factor: 11.205

10.  Structural principles within the human-virus protein-protein interaction network.

Authors:  Eric A Franzosa; Yu Xia
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-16       Impact factor: 11.205

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