Literature DB >> 23893395

Chemical shift assignments of domain 4 from the phosphohexomutase from Pseudomonas aeruginosa suggest that freeing perturbs its coevolved domain interface.

Yirui Wei1, Thomas C Marcink, Jia Xu, Arthur G Sirianni, Akella V S Sarma, Stephen H Prior, Lesa J Beamer, Steven R Van Doren.   

Abstract

A domain needed for the catalytic efficiency of an enzyme model of simple processivity and domain-domain interactions has been characterized by NMR. This domain 4 from phosphomannomutase/phosphoglucomutase (PMM/PGM) closes upon glucose phosphate and mannose phosphate ligands in the active site, and can modestly reconstitute activity of enzyme truncated to domains 1-3. This enzyme supports biosynthesis of the saccharide-derived virulence factors (rhamnolipids, lipopolysaccharides, and alginate) of the opportunistic bacterial pathogen Pseudomonas aeruginosa. (1)H, (13)C, and (15)N NMR chemical shift assignments of domain 4 of PMM/PGM suggest preservation and independence of its structure when separated from domains 1-3. The face of domain 4 that packs with domain 3 is perturbed in NMR spectra without disrupting this fold. The perturbed residues overlap both the most highly coevolved positions in the interface and residues lining a cavity at the domain interface.

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Year:  2013        PMID: 23893395      PMCID: PMC3905050          DOI: 10.1007/s12104-013-9511-5

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  24 in total

1.  The Pseudomonas aeruginosa algC gene product participates in rhamnolipid biosynthesis.

Authors:  C Olvera; J B Goldberg; R Sánchez; G Soberón-Chávez
Journal:  FEMS Microbiol Lett       Date:  1999-10-01       Impact factor: 2.742

2.  A KINETIC STUDY OF THE PHOSPHOGLUCOMUTASE PATHWAY.

Authors:  W J RAY; G A ROSCELLI
Journal:  J Biol Chem       Date:  1964-04       Impact factor: 5.157

3.  SAGA: rapid automatic mainchain NMR assignment for large proteins.

Authors:  Gordon M Crippen; Aikaterini Rousaki; Matthew Revington; Yongbo Zhang; Erik R P Zuiderweg
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

4.  Breaking the covalent connection: Chain connectivity and the catalytic reaction of PMM/PGM.

Authors:  Andrew M Schramm; Dale Karr; Ritcha Mehra-Chaudhary; Steven R Van Doren; Cristina M Furdui; Lesa J Beamer
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

5.  Anaerobic production of alginate by Pseudomonas aeruginosa: alginate restricts diffusion of oxygen.

Authors:  D J Hassett
Journal:  J Bacteriol       Date:  1996-12       Impact factor: 3.490

6.  Conservation of functionally important global motions in an enzyme superfamily across varying quaternary structures.

Authors:  Emily K Luebbering; Jacob Mick; Ranjan K Singh; John J Tanner; Ritcha Mehra-Chaudhary; Lesa J Beamer
Journal:  J Mol Biol       Date:  2012-08-27       Impact factor: 5.469

7.  Kinetic mechanism and pH dependence of the kinetic parameters of Pseudomonas aeruginosa phosphomannomutase/phosphoglucomutase.

Authors:  L E Naught; P A Tipton
Journal:  Arch Biochem Biophys       Date:  2001-12-01       Impact factor: 4.013

8.  Evolutionary trace analysis of the alpha-D-phosphohexomutase superfamily.

Authors:  Grant S Shackelford; Catherine A Regni; Lesa J Beamer
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

9.  A coevolutionary residue network at the site of a functionally important conformational change in a phosphohexomutase enzyme family.

Authors:  Yingying Lee; Jacob Mick; Cristina Furdui; Lesa J Beamer
Journal:  PLoS One       Date:  2012-06-07       Impact factor: 3.240

10.  CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Authors:  David S Wishart; David Arndt; Mark Berjanskii; Peter Tang; Jianjun Zhou; Guohui Lin
Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971

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  4 in total

1.  Promotion of enzyme flexibility by dephosphorylation and coupling to the catalytic mechanism of a phosphohexomutase.

Authors:  Yingying Lee; Maria T Villar; Antonio Artigues; Lesa J Beamer
Journal:  J Biol Chem       Date:  2014-01-08       Impact factor: 5.157

2.  Biology, Mechanism, and Structure of Enzymes in the α-d-Phosphohexomutase Superfamily.

Authors:  Kyle M Stiers; Andrew G Muenks; Lesa J Beamer
Journal:  Adv Protein Chem Struct Biol       Date:  2017-05-17       Impact factor: 3.507

3.  Induced Structural Disorder as a Molecular Mechanism for Enzyme Dysfunction in Phosphoglucomutase 1 Deficiency.

Authors:  Kyle M Stiers; Bailee N Kain; Abigail C Graham; Lesa J Beamer
Journal:  J Mol Biol       Date:  2016-03-10       Impact factor: 5.469

Review 4.  Mutations in hereditary phosphoglucomutase 1 deficiency map to key regions of enzyme structure and function.

Authors:  Lesa J Beamer
Journal:  J Inherit Metab Dis       Date:  2014-08-29       Impact factor: 4.982

  4 in total

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