Literature DB >> 22220115

2-(5-Fluoro-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Pil Ja Seo, Hong Dae Choi, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(13)H(13)FO(3)S, was prepared by alkaline hydrolysis of ethyl 2-(5-fluoro-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetate. In the crystal, the carb-oxy groups are involved in inter-molecular O-H⋯O hydrogen bonds, which link the mol-ecules into centrosymmetric dimers. These dimers are further packed into stacks along the b axis by a slipped π-π inter-action between the furan and benzene rings of neighbouring mol-ecules [centroid-centroid distance = 3.727 (2) Å, inter-planar distance = 3.465 (2) Å and slippage = 1.373 (2) Å]. The crystal structure also exhibits a short S⋯O contact [S⋯O = 3.219 (2) Å].

Entities:  

Year:  2011        PMID: 22220115      PMCID: PMC3247497          DOI: 10.1107/S1600536811044436

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the crystal structures of related compounds, see: Choi et al. (2009 ▶).

Experimental

Crystal data

C13H13FO3S M = 268.29 Monoclinic, a = 10.6101 (2) Å b = 8.5749 (1) Å c = 13.6083 (2) Å β = 97.149 (1)° V = 1228.47 (3) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 296 K 0.34 × 0.26 × 0.16 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.913, T max = 0.958 11299 measured reflections 2812 independent reflections 2535 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.084 S = 1.08 2812 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044436/vm2132sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044436/vm2132Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044436/vm2132Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H13FO3SF(000) = 560
Mr = 268.29Dx = 1.451 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6368 reflections
a = 10.6101 (2) Åθ = 2.3–27.5°
b = 8.5749 (1) ŵ = 0.27 mm1
c = 13.6083 (2) ÅT = 296 K
β = 97.149 (1)°Block, colourless
V = 1228.47 (3) Å30.34 × 0.26 × 0.16 mm
Z = 4
Bruker SMART APEXII CCD diffractometer2812 independent reflections
Radiation source: rotating anode2535 reflections with I > 2σ(I)
graphite multilayerRint = 0.026
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 2.3°
φ and ω scansh = −9→13
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −9→11
Tmin = 0.913, Tmax = 0.958l = −17→17
11299 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: difference Fourier map
wR(F2) = 0.084H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0391P)2 + 0.4795P] where P = (Fo2 + 2Fc2)/3
2812 reflections(Δ/σ)max < 0.001
169 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.78862 (3)0.58282 (4)0.59632 (2)0.02413 (11)
F10.31233 (8)0.47027 (11)0.75555 (6)0.0345 (2)
O10.59098 (8)0.21589 (10)0.48893 (6)0.0214 (2)
O20.98666 (9)0.17121 (12)0.42302 (8)0.0282 (2)
H21.039 (2)0.102 (3)0.4435 (17)0.061 (7)*
O30.85509 (9)0.05406 (12)0.51590 (8)0.0315 (2)
C10.68384 (12)0.42599 (14)0.56964 (9)0.0193 (3)
C20.56451 (12)0.39600 (14)0.60737 (9)0.0193 (3)
C30.49739 (12)0.46787 (15)0.67707 (9)0.0231 (3)
H30.52840.55540.71260.028*
C40.38297 (13)0.40136 (16)0.68987 (10)0.0250 (3)
C50.33252 (12)0.26984 (17)0.64039 (10)0.0263 (3)
H50.25490.23000.65370.032*
C60.39816 (12)0.19808 (16)0.57121 (10)0.0241 (3)
H60.36720.10960.53680.029*
C70.51263 (12)0.26584 (15)0.55626 (9)0.0194 (3)
C80.69308 (11)0.31625 (14)0.49921 (9)0.0198 (3)
C90.79023 (13)0.29168 (16)0.43123 (10)0.0245 (3)
H9A0.83870.38710.42800.029*
H9B0.74750.27070.36530.029*
C100.88063 (12)0.15988 (15)0.46143 (9)0.0212 (3)
C110.89540 (13)0.51469 (17)0.70409 (10)0.0266 (3)
H110.95450.60040.72330.032*
C120.82624 (15)0.4816 (2)0.79269 (11)0.0363 (4)
H12A0.76900.39570.77790.055*
H12B0.77910.57230.80760.055*
H12C0.88680.45580.84880.055*
C130.97563 (14)0.3767 (2)0.67876 (12)0.0370 (4)
H13A1.03820.35380.73410.056*
H13B1.01730.40190.62210.056*
H13C0.92200.28740.66420.056*
U11U22U33U12U13U23
S10.02556 (18)0.01943 (17)0.02593 (18)−0.00434 (12)−0.00267 (13)0.00363 (12)
F10.0348 (5)0.0401 (5)0.0317 (4)0.0130 (4)0.0158 (4)0.0031 (4)
O10.0213 (4)0.0201 (4)0.0227 (4)−0.0003 (4)0.0024 (3)−0.0032 (3)
O20.0196 (5)0.0303 (5)0.0363 (5)0.0019 (4)0.0095 (4)0.0084 (4)
O30.0273 (5)0.0289 (5)0.0413 (6)0.0064 (4)0.0158 (4)0.0119 (4)
C10.0185 (6)0.0180 (6)0.0207 (6)−0.0002 (5)−0.0002 (5)0.0021 (5)
C20.0188 (6)0.0187 (6)0.0197 (6)0.0029 (5)−0.0001 (5)0.0020 (5)
C30.0270 (7)0.0205 (6)0.0216 (6)0.0047 (5)0.0026 (5)−0.0008 (5)
C40.0253 (7)0.0287 (7)0.0219 (6)0.0103 (5)0.0069 (5)0.0054 (5)
C50.0193 (6)0.0305 (7)0.0292 (7)0.0013 (5)0.0035 (5)0.0101 (6)
C60.0217 (6)0.0228 (6)0.0266 (6)−0.0014 (5)−0.0018 (5)0.0027 (5)
C70.0193 (6)0.0196 (6)0.0191 (5)0.0037 (5)0.0007 (4)0.0013 (5)
C80.0182 (6)0.0194 (6)0.0212 (6)0.0013 (5)0.0004 (5)0.0024 (5)
C90.0253 (7)0.0255 (7)0.0237 (6)0.0034 (5)0.0067 (5)0.0029 (5)
C100.0209 (6)0.0224 (6)0.0209 (6)−0.0013 (5)0.0051 (5)−0.0022 (5)
C110.0249 (7)0.0266 (7)0.0261 (7)−0.0072 (5)−0.0059 (5)0.0037 (5)
C120.0394 (8)0.0435 (9)0.0245 (7)−0.0098 (7)−0.0023 (6)0.0027 (6)
C130.0276 (7)0.0404 (9)0.0410 (8)0.0041 (7)−0.0040 (6)0.0072 (7)
S1—C11.7539 (13)C5—H50.9300
S1—C111.8335 (13)C6—C71.3840 (18)
S1—O2i3.2185 (10)C6—H60.9300
F1—C41.3699 (15)C8—C91.4832 (17)
O1—C81.3769 (15)C9—C101.5060 (18)
O1—C71.3797 (15)C9—H9A0.9700
O2—C101.3018 (15)C9—H9B0.9700
O2—H20.84 (2)C11—C121.514 (2)
O3—C101.2232 (16)C11—C131.522 (2)
C1—C81.3553 (18)C11—H110.9800
C1—C21.4472 (17)C12—H12A0.9600
C2—C71.3919 (18)C12—H12B0.9600
C2—C31.3981 (17)C12—H12C0.9600
C3—C41.3719 (19)C13—H13A0.9600
C3—H30.9300C13—H13B0.9600
C4—C51.386 (2)C13—H13C0.9600
C5—C61.3832 (19)
C1—S1—C11103.53 (6)O1—C8—C9116.54 (11)
C1—S1—O2i160.48 (5)C8—C9—C10113.88 (11)
C11—S1—O2i83.33 (5)C8—C9—H9A108.8
C8—O1—C7105.66 (9)C10—C9—H9A108.8
C10—O2—H2112.4 (15)C8—C9—H9B108.8
C8—C1—C2105.73 (11)C10—C9—H9B108.8
C8—C1—S1125.38 (10)H9A—C9—H9B107.7
C2—C1—S1128.52 (10)O3—C10—O2124.50 (12)
C7—C2—C3119.30 (12)O3—C10—C9122.72 (11)
C7—C2—C1105.91 (11)O2—C10—C9112.79 (11)
C3—C2—C1134.78 (12)C12—C11—C13112.00 (13)
C4—C3—C2115.87 (12)C12—C11—S1112.60 (10)
C4—C3—H3122.1C13—C11—S1111.96 (10)
C2—C3—H3122.1C12—C11—H11106.6
F1—C4—C3117.92 (13)C13—C11—H11106.6
F1—C4—C5117.27 (12)S1—C11—H11106.6
C3—C4—C5124.81 (12)C11—C12—H12A109.5
C6—C5—C4119.72 (12)C11—C12—H12B109.5
C6—C5—H5120.1H12A—C12—H12B109.5
C4—C5—H5120.1C11—C12—H12C109.5
C5—C6—C7116.02 (12)H12A—C12—H12C109.5
C5—C6—H6122.0H12B—C12—H12C109.5
C7—C6—H6122.0C11—C13—H13A109.5
O1—C7—C6125.42 (12)C11—C13—H13B109.5
O1—C7—C2110.32 (11)H13A—C13—H13B109.5
C6—C7—C2124.26 (12)C11—C13—H13C109.5
C1—C8—O1112.37 (11)H13A—C13—H13C109.5
C1—C8—C9131.05 (12)H13B—C13—H13C109.5
C11—S1—C1—C8−98.49 (12)C3—C2—C7—O1177.94 (11)
O2i—S1—C1—C810.3 (2)C1—C2—C7—O1−0.95 (13)
C11—S1—C1—C289.60 (12)C3—C2—C7—C6−1.66 (19)
O2i—S1—C1—C2−161.66 (10)C1—C2—C7—C6179.46 (12)
C8—C1—C2—C71.13 (13)C2—C1—C8—O1−0.95 (14)
S1—C1—C2—C7174.29 (10)S1—C1—C8—O1−174.38 (9)
C8—C1—C2—C3−177.50 (14)C2—C1—C8—C9176.54 (13)
S1—C1—C2—C3−4.3 (2)S1—C1—C8—C93.1 (2)
C7—C2—C3—C40.35 (18)C7—O1—C8—C10.38 (13)
C1—C2—C3—C4178.84 (13)C7—O1—C8—C9−177.51 (10)
C2—C3—C4—F1−178.33 (11)C1—C8—C9—C10103.58 (16)
C2—C3—C4—C51.0 (2)O1—C8—C9—C10−79.02 (14)
F1—C4—C5—C6178.22 (11)C8—C9—C10—O321.68 (19)
C3—C4—C5—C6−1.1 (2)C8—C9—C10—O2−158.70 (11)
C4—C5—C6—C7−0.16 (18)C1—S1—C11—C12−61.64 (12)
C8—O1—C7—C6179.98 (12)O2i—S1—C11—C12136.93 (11)
C8—O1—C7—C20.39 (13)C1—S1—C11—C1365.60 (11)
C5—C6—C7—O1−178.00 (11)O2i—S1—C11—C13−95.82 (10)
C5—C6—C7—C21.53 (19)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3ii0.84 (2)1.79 (2)2.6257 (14)177 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.84 (2)1.79 (2)2.6257 (14)177 (2)

Symmetry code: (i) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2-(3-Ethyl-sulfanyl-5-fluoro-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-16

6.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

7.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

8.  2-(5-Fluoro-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11
  8 in total
  1 in total

1.  2-(5-Fluoro-3-isopropyl-sulfanyl-7-methyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-03
  1 in total

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