Literature DB >> 22590008

2-(5-Fluoro-3-isopropyl-sulfanyl-7-methyl-1-benzofuran-2-yl)acetic acid.

Hong Dae Choi, Pil Ja Seo, Uk Lee.   

Abstract

The title compound, C(14)H(15)FO(3)S, was prepared by alkaline hydrolysis of ethyl 2-(5-fluoro-3-isopropyl-sulfanyl-7-methyl-1-benzofuran-2-yl)acetate. In the crystal, mol-ecules are linked via pairs of O-H⋯O hydrogen bonds, forming inversion dimers. These dimers are connected by weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590008      PMCID: PMC3343927          DOI: 10.1107/S1600536812008240

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and the crystal structures of related compounds, see: Seo et al. (2011 ▶, 2012 ▶).

Experimental

Crystal data

C14H15FO3S M = 282.32 Triclinic, a = 8.4365 (2) Å b = 9.2771 (2) Å c = 9.7956 (2) Å α = 91.404 (1)° β = 91.2710 (1)° γ = 115.111 (1)° V = 693.55 (3) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 173 K 0.35 × 0.32 × 0.28 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.919, T max = 0.934 12921 measured reflections 3467 independent reflections 2946 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.155 S = 1.06 3467 reflections 179 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.93 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812008240/ld2050sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812008240/ld2050Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812008240/ld2050Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15FO3SZ = 2
Mr = 282.32F(000) = 296
Triclinic, P1Dx = 1.352 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4365 (2) ÅCell parameters from 5886 reflections
b = 9.2771 (2) Åθ = 2.4–28.4°
c = 9.7956 (2) ŵ = 0.25 mm1
α = 91.404 (1)°T = 173 K
β = 91.2710 (1)°Block, colourless
γ = 115.111 (1)°0.35 × 0.32 × 0.28 mm
V = 693.55 (3) Å3
Bruker SMART APEXII CCD diffractometer3467 independent reflections
Radiation source: rotating anode2946 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 2.1°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −11→12
Tmin = 0.919, Tmax = 0.934l = −13→13
12921 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: difference Fourier map
wR(F2) = 0.155H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0853P)2 + 0.3723P] where P = (Fo2 + 2Fc2)/3
3467 reflections(Δ/σ)max < 0.001
179 parametersΔρmax = 0.93 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.64151 (7)0.31790 (6)0.28518 (5)0.03564 (17)
F10.78061 (17)0.98655 (14)0.35845 (16)0.0503 (4)
O10.23013 (17)0.40794 (15)0.34150 (13)0.0310 (3)
O20.1261 (3)0.16845 (17)0.07988 (16)0.0552 (5)
O30.0331 (2)−0.07438 (16)0.15984 (16)0.0434 (4)
H3O−0.022 (5)−0.102 (5)0.082 (4)0.097 (13)*
C10.4901 (2)0.3980 (2)0.30894 (17)0.0273 (4)
C20.5220 (2)0.5633 (2)0.32776 (16)0.0261 (3)
C30.6709 (2)0.7080 (2)0.33113 (19)0.0309 (4)
H30.78520.71410.32030.037*
C40.6403 (3)0.8411 (2)0.3512 (2)0.0343 (4)
C50.4765 (3)0.8394 (2)0.3669 (2)0.0348 (4)
H50.46640.93710.37910.042*
C60.3272 (3)0.6965 (2)0.36477 (18)0.0312 (4)
C70.3583 (2)0.5618 (2)0.34579 (17)0.0273 (4)
C80.3153 (2)0.3132 (2)0.31893 (17)0.0287 (4)
C90.1464 (3)0.6865 (3)0.3815 (2)0.0426 (5)
H9A0.06040.57520.37050.064*
H9B0.12220.74970.31220.064*
H9C0.13860.72830.47280.064*
C100.2049 (3)0.1387 (2)0.30994 (19)0.0349 (4)
H10A0.11390.11150.37920.042*
H10B0.27890.08280.33220.042*
C110.1170 (3)0.0792 (2)0.17141 (19)0.0317 (4)
C120.6510 (5)0.3118 (4)0.0971 (3)0.0624 (8)
H120.52840.25650.05810.075*
C130.7450 (8)0.2152 (6)0.0605 (5)0.124 (2)
H13A0.73670.1960−0.03880.186*
H13B0.69250.11320.10550.186*
H13C0.86830.27220.09040.186*
C140.7333 (5)0.4753 (4)0.0408 (3)0.0766 (10)
H14A0.85350.53180.07830.115*
H14B0.66520.53440.06630.115*
H14C0.73510.4665−0.05900.115*
U11U22U33U12U13U23
S10.0454 (3)0.0356 (3)0.0327 (3)0.0233 (2)0.0074 (2)0.00516 (18)
F10.0421 (7)0.0235 (6)0.0731 (9)0.0025 (5)0.0028 (6)−0.0043 (6)
O10.0274 (6)0.0274 (6)0.0340 (7)0.0077 (5)−0.0037 (5)0.0021 (5)
O20.0785 (12)0.0260 (7)0.0413 (8)0.0041 (7)−0.0244 (8)0.0048 (6)
O30.0606 (10)0.0224 (6)0.0362 (8)0.0077 (6)−0.0109 (7)0.0002 (5)
C10.0329 (9)0.0237 (8)0.0232 (7)0.0103 (7)−0.0018 (6)−0.0003 (6)
C20.0304 (9)0.0243 (8)0.0217 (7)0.0101 (7)−0.0009 (6)−0.0001 (6)
C30.0278 (9)0.0277 (8)0.0334 (9)0.0082 (7)0.0014 (7)−0.0006 (7)
C40.0365 (10)0.0232 (8)0.0354 (9)0.0056 (7)−0.0011 (7)−0.0015 (7)
C50.0436 (11)0.0269 (8)0.0353 (9)0.0164 (8)0.0006 (8)−0.0004 (7)
C60.0342 (10)0.0329 (9)0.0287 (8)0.0164 (8)−0.0014 (7)0.0023 (7)
C70.0285 (8)0.0261 (8)0.0244 (8)0.0091 (7)−0.0034 (6)0.0013 (6)
C80.0324 (9)0.0243 (8)0.0259 (8)0.0088 (7)−0.0038 (6)0.0012 (6)
C90.0393 (11)0.0434 (11)0.0521 (12)0.0240 (9)0.0007 (9)0.0072 (9)
C100.0392 (10)0.0245 (8)0.0326 (9)0.0057 (7)−0.0070 (8)0.0034 (7)
C110.0328 (9)0.0229 (8)0.0332 (9)0.0061 (7)−0.0037 (7)0.0015 (6)
C120.097 (2)0.0646 (16)0.0406 (12)0.0479 (16)0.0232 (13)0.0050 (11)
C130.202 (6)0.151 (4)0.086 (3)0.135 (5)0.063 (3)0.026 (3)
C140.116 (3)0.076 (2)0.0474 (15)0.048 (2)0.0261 (16)0.0178 (14)
S1—C11.7464 (19)C6—C91.502 (3)
S1—C121.847 (3)C8—C101.485 (2)
F1—C41.365 (2)C9—H9A0.9800
O1—C81.368 (2)C9—H9B0.9800
O1—C71.376 (2)C9—H9C0.9800
O2—C111.217 (2)C10—C111.506 (3)
O3—C111.295 (2)C10—H10A0.9900
O3—H3O0.86 (4)C10—H10B0.9900
C1—C81.352 (3)C12—C131.469 (4)
C1—C21.446 (2)C12—C141.501 (4)
C2—C71.390 (3)C12—H121.0000
C2—C31.395 (2)C13—H13A0.9800
C3—C41.375 (3)C13—H13B0.9800
C3—H30.9500C13—H13C0.9800
C4—C51.387 (3)C14—H14A0.9800
C5—C61.387 (3)C14—H14B0.9800
C5—H50.9500C14—H14C0.9800
C6—C71.390 (3)
C1—S1—C12101.58 (11)C6—C9—H9C109.5
C8—O1—C7105.60 (14)H9A—C9—H9C109.5
C11—O3—H3O110 (3)H9B—C9—H9C109.5
C8—C1—C2105.76 (16)C8—C10—C11113.50 (15)
C8—C1—S1125.54 (14)C8—C10—H10A108.9
C2—C1—S1128.66 (14)C11—C10—H10A108.9
C7—C2—C3119.79 (16)C8—C10—H10B108.9
C7—C2—C1105.53 (15)C11—C10—H10B108.9
C3—C2—C1134.68 (17)H10A—C10—H10B107.7
C4—C3—C2115.14 (17)O2—C11—O3123.96 (17)
C4—C3—H3122.4O2—C11—C10122.48 (16)
C2—C3—H3122.4O3—C11—C10113.55 (16)
F1—C4—C3118.24 (18)C13—C12—C14112.4 (3)
F1—C4—C5116.81 (17)C13—C12—S1107.5 (2)
C3—C4—C5124.94 (17)C14—C12—S1112.2 (2)
C4—C5—C6120.63 (17)C13—C12—H12108.2
C4—C5—H5119.7C14—C12—H12108.2
C6—C5—H5119.7S1—C12—H12108.2
C5—C6—C7114.44 (17)C12—C13—H13A109.5
C5—C6—C9123.24 (18)C12—C13—H13B109.5
C7—C6—C9122.32 (18)H13A—C13—H13B109.5
O1—C7—C2110.54 (15)C12—C13—H13C109.5
O1—C7—C6124.41 (17)H13A—C13—H13C109.5
C2—C7—C6125.04 (17)H13B—C13—H13C109.5
C1—C8—O1112.56 (15)C12—C14—H14A109.5
C1—C8—C10130.95 (18)C12—C14—H14B109.5
O1—C8—C10116.49 (16)H14A—C14—H14B109.5
C6—C9—H9A109.5C12—C14—H14C109.5
C6—C9—H9B109.5H14A—C14—H14C109.5
H9A—C9—H9B109.5H14B—C14—H14C109.5
C12—S1—C1—C891.91 (19)C3—C2—C7—C61.5 (3)
C12—S1—C1—C2−91.00 (18)C1—C2—C7—C6−178.68 (16)
C8—C1—C2—C7−0.86 (19)C5—C6—C7—O1179.41 (16)
S1—C1—C2—C7−178.39 (13)C9—C6—C7—O1−0.6 (3)
C8—C1—C2—C3178.94 (19)C5—C6—C7—C2−1.0 (3)
S1—C1—C2—C31.4 (3)C9—C6—C7—C2179.04 (18)
C7—C2—C3—C4−0.7 (3)C2—C1—C8—O10.5 (2)
C1—C2—C3—C4179.49 (18)S1—C1—C8—O1178.10 (12)
C2—C3—C4—F1178.68 (16)C2—C1—C8—C10−179.33 (17)
C2—C3—C4—C5−0.4 (3)S1—C1—C8—C10−1.7 (3)
F1—C4—C5—C6−178.20 (17)C7—O1—C8—C10.13 (19)
C3—C4—C5—C60.9 (3)C7—O1—C8—C10179.95 (14)
C4—C5—C6—C7−0.2 (3)C1—C8—C10—C11−98.2 (2)
C4—C5—C6—C9179.80 (19)O1—C8—C10—C1182.0 (2)
C8—O1—C7—C2−0.71 (18)C8—C10—C11—O2−5.3 (3)
C8—O1—C7—C6178.95 (16)C8—C10—C11—O3174.37 (18)
C3—C2—C7—O1−178.85 (15)C1—S1—C12—C13−168.1 (3)
C1—C2—C7—O10.98 (19)C1—S1—C12—C1467.9 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O2i0.86 (4)1.76 (4)2.616 (2)176 (4)
C9—H9B···O3ii0.982.563.534 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O2i0.86 (4)1.76 (4)2.616 (2)176 (4)
C9—H9B⋯O3ii0.982.563.534 (3)171

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(5-Fluoro-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

3.  2-(5-Bromo-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10
  3 in total

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