Literature DB >> 21577933

2-(3-Ethyl-sulfanyl-5-fluoro-1-benzofuran-2-yl)acetic acid.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

The title compound, C(12)H(11)FO(3)S, was prepared by alkaline hydrolysis of ethyl 2-(3-ethyl-sulfan-yl-5-fluoro-1-benzofuran-2--yl) acetate. In the crystal structure, the carboxyl groups are involved in inter-molecular O-H⋯O hydrogen bonds, which link the mol-ecules into centrosymmetric dimers. These dimers are further packed into stacks along the b axis by aromatic π-π inter-actions between the furan ring and the benzene ring of neighbouring benzofuran ring systems [centroid-centroid distance = 3.684 (5) Å].

Entities:  

Year:  2009        PMID: 21577933      PMCID: PMC2970325          DOI: 10.1107/S160053680903671X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 2–(5–halo–1–benzofuran–2–­yl) acetic acid derivatives, see: Choi et al. (2009a ▶,b ▶). For the pharmacological properties of benzofuran compounds, see: Howlett et al. (1999 ▶); Twyman & Allsop (1999 ▶).

Experimental

Crystal data

C12H11FO3S M = 254.27 Monoclinic, a = 10.6009 (9) Å b = 8.3319 (7) Å c = 13.395 (1) Å β = 96.138 (1)° V = 1176.34 (17) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 173 K 0.25 × 0.20 × 0.16 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.931, T max = 0.958 9646 measured reflections 2543 independent reflections 1541 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.113 S = 1.16 2543 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I. DOI: 10.1107/S160053680903671X/zq2007sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903671X/zq2007Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11FO3SF(000) = 528
Mr = 254.27Dx = 1.436 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2478 reflections
a = 10.6009 (9) Åθ = 2.3–27.4°
b = 8.3319 (7) ŵ = 0.28 mm1
c = 13.395 (1) ÅT = 173 K
β = 96.138 (1)°Block, colorless
V = 1176.34 (17) Å30.25 × 0.20 × 0.16 mm
Z = 4
Bruker SMART CCD diffractometer2543 independent reflections
Radiation source: fine-focus sealed tube1541 reflections with I > 2σ(I)
graphiteRint = 0.072
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.3°
φ and ω scansh = −13→13
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)k = −10→10
Tmin = 0.931, Tmax = 0.958l = −17→17
9646 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: difference Fourier map
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.P)2 + 1.581P] where P = (Fo2 + 2Fc2)/3
2543 reflections(Δ/σ)max < 0.001
159 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.76702 (8)0.59687 (10)0.63171 (7)0.0380 (2)
F0.2776 (2)0.4175 (3)0.75176 (16)0.0561 (6)
O10.5990 (2)0.2294 (2)0.48565 (15)0.0279 (5)
O20.9881 (2)0.1796 (3)0.4247 (2)0.0459 (7)
H21.034 (5)0.097 (6)0.437 (4)0.11 (2)*
O30.8642 (2)0.0735 (3)0.53184 (18)0.0403 (6)
C10.6717 (3)0.4365 (3)0.5848 (2)0.0252 (7)
C20.5483 (3)0.3918 (3)0.6122 (2)0.0247 (7)
C30.4702 (3)0.4454 (4)0.6824 (2)0.0327 (8)
H30.49340.53040.72550.039*
C40.3580 (3)0.3667 (4)0.6845 (3)0.0374 (9)
C50.3184 (3)0.2392 (4)0.6226 (3)0.0387 (9)
H50.24040.19070.62800.046*
C60.3949 (3)0.1847 (4)0.5531 (2)0.0334 (8)
H60.37110.09920.51070.040*
C70.5087 (3)0.2634 (3)0.5496 (2)0.0251 (7)
C80.6966 (3)0.3365 (4)0.5101 (2)0.0263 (7)
C90.8058 (3)0.3237 (4)0.4507 (2)0.0344 (8)
H9A0.85780.41900.46250.041*
H9B0.77420.32190.38010.041*
C100.8882 (3)0.1785 (4)0.4735 (2)0.0290 (7)
C110.8469 (4)0.5118 (4)0.7462 (3)0.0505 (11)
H11A0.88600.59810.78710.061*
H11B0.78400.46180.78360.061*
C120.9460 (4)0.3907 (5)0.7297 (3)0.0584 (12)
H12A0.90690.29890.69590.088*
H12B0.98890.35830.79320.088*
H12C1.00610.43690.68920.088*
U11U22U33U12U13U23
S0.0381 (5)0.0222 (4)0.0500 (5)−0.0057 (4)−0.0124 (4)0.0003 (4)
F0.0489 (13)0.0634 (15)0.0605 (14)0.0130 (12)0.0265 (11)0.0092 (12)
O10.0296 (12)0.0246 (11)0.0286 (12)0.0014 (10)−0.0018 (10)−0.0065 (9)
O20.0306 (14)0.0502 (17)0.0602 (17)0.0095 (13)0.0200 (13)0.0200 (14)
O30.0360 (14)0.0379 (14)0.0499 (15)0.0090 (11)0.0177 (12)0.0116 (12)
C10.0288 (17)0.0182 (15)0.0268 (16)0.0005 (13)−0.0051 (13)0.0020 (12)
C20.0282 (16)0.0197 (15)0.0245 (16)0.0045 (13)−0.0046 (13)0.0024 (13)
C30.041 (2)0.0254 (17)0.0309 (18)0.0074 (15)0.0003 (16)0.0013 (14)
C40.036 (2)0.039 (2)0.040 (2)0.0126 (16)0.0109 (17)0.0143 (16)
C50.0277 (18)0.0320 (19)0.056 (2)−0.0019 (15)0.0017 (17)0.0157 (17)
C60.0317 (19)0.0238 (16)0.042 (2)0.0001 (15)−0.0079 (16)0.0053 (15)
C70.0270 (17)0.0192 (15)0.0278 (17)0.0021 (13)−0.0029 (14)0.0036 (13)
C80.0256 (17)0.0233 (15)0.0294 (17)0.0018 (14)−0.0003 (14)0.0020 (13)
C90.0333 (19)0.0324 (18)0.0375 (19)0.0064 (15)0.0047 (16)0.0048 (15)
C100.0265 (18)0.0307 (17)0.0298 (18)−0.0012 (15)0.0032 (14)−0.0001 (14)
C110.062 (3)0.042 (2)0.042 (2)−0.002 (2)−0.0234 (19)−0.0088 (18)
C120.051 (2)0.059 (3)0.060 (3)0.002 (2)−0.017 (2)0.020 (2)
S—C11.751 (3)C5—C61.376 (5)
S—C111.815 (4)C5—H50.9300
F—C41.371 (4)C6—C71.379 (4)
O1—C81.379 (4)C6—H60.9300
O1—C71.380 (4)C8—C91.477 (4)
O2—C101.303 (4)C9—C101.504 (4)
O2—H20.85 (5)C9—H9A0.9700
O3—C101.217 (4)C9—H9B0.9700
C1—C81.349 (4)C11—C121.491 (5)
C1—C21.445 (4)C11—H11A0.9700
C2—C31.391 (4)C11—H11B0.9700
C2—C71.395 (4)C12—H12A0.9600
C3—C41.362 (5)C12—H12B0.9600
C3—H30.9300C12—H12C0.9600
C4—C51.385 (5)
C1—S—C11101.79 (15)C1—C8—O1112.0 (3)
C8—O1—C7105.8 (2)C1—C8—C9132.1 (3)
C10—O2—H2112 (4)O1—C8—C9115.9 (3)
C8—C1—C2106.5 (3)C8—C9—C10114.9 (3)
C8—C1—S125.9 (3)C8—C9—H9A108.6
C2—C1—S127.5 (2)C10—C9—H9A108.6
C3—C2—C7119.4 (3)C8—C9—H9B108.6
C3—C2—C1135.2 (3)C10—C9—H9B108.6
C7—C2—C1105.5 (3)H9A—C9—H9B107.5
C4—C3—C2116.3 (3)O3—C10—O2124.3 (3)
C4—C3—H3121.8O3—C10—C9123.5 (3)
C2—C3—H3121.8O2—C10—C9112.2 (3)
C3—C4—F118.1 (3)C12—C11—S114.3 (3)
C3—C4—C5124.5 (3)C12—C11—H11A108.7
F—C4—C5117.4 (3)S—C11—H11A108.7
C6—C5—C4119.7 (3)C12—C11—H11B108.7
C6—C5—H5120.2S—C11—H11B108.7
C4—C5—H5120.2H11A—C11—H11B107.6
C5—C6—C7116.6 (3)C11—C12—H12A109.5
C5—C6—H6121.7C11—C12—H12B109.5
C7—C6—H6121.7H12A—C12—H12B109.5
C6—C7—O1126.2 (3)C11—C12—H12C109.5
C6—C7—C2123.5 (3)H12A—C12—H12C109.5
O1—C7—C2110.3 (3)H12B—C12—H12C109.5
C11—S—C1—C8−101.3 (3)C8—O1—C7—C21.0 (3)
C11—S—C1—C283.6 (3)C3—C2—C7—C6−0.1 (4)
C8—C1—C2—C3179.5 (3)C1—C2—C7—C6179.3 (3)
S—C1—C2—C3−4.6 (5)C3—C2—C7—O1179.8 (3)
C8—C1—C2—C70.4 (3)C1—C2—C7—O1−0.8 (3)
S—C1—C2—C7176.2 (2)C2—C1—C8—O10.2 (3)
C7—C2—C3—C4−0.2 (4)S—C1—C8—O1−175.7 (2)
C1—C2—C3—C4−179.3 (3)C2—C1—C8—C9179.1 (3)
C2—C3—C4—F−179.1 (3)S—C1—C8—C93.2 (5)
C2—C3—C4—C50.2 (5)C7—O1—C8—C1−0.7 (3)
C3—C4—C5—C60.0 (5)C7—O1—C8—C9−179.8 (2)
F—C4—C5—C6179.3 (3)C1—C8—C9—C10109.0 (4)
C4—C5—C6—C7−0.2 (5)O1—C8—C9—C10−72.1 (4)
C5—C6—C7—O1−179.6 (3)C8—C9—C10—O34.1 (5)
C5—C6—C7—C20.3 (4)C8—C9—C10—O2−175.1 (3)
C8—O1—C7—C6−179.1 (3)C1—S—C11—C1272.7 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.85 (5)1.81 (5)2.654 (3)177 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.85 (5)1.81 (5)2.654 (3)177 (5)

Symmetry code: (i) .

  4 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  2-(5-Bromo-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21

4.  2-(5-Fluoro-3-methyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11
  4 in total
  1 in total

1.  2-(5-Fluoro-3-isopropyl-sulfanyl-1-benzofuran-2-yl)acetic acid.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  1 in total

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