Literature DB >> 22209982

Reconstitution of respiratory oxidases in membrane nanodiscs for investigation of proton-coupled electron transfer.

Linda Näsvik Öjemyr1, Christoph von Ballmoos, Robert B Gennis, Stephen G Sligar, Peter Brzezinski.   

Abstract

The function of membrane-bound transporters is commonly affected by the milieu of the hydrophobic, membrane-spanning part of the transmembrane protein. Consequently, functional studies of these proteins often involve incorporation into a native-like bilayer where the lipid components of the membrane can be controlled. The classical approach is to reconstitute the purified protein into liposomes. Even though the use of such liposomes is essential for studies of transmembrane transport processes in general, functional studies of the transporters themselves in liposomes suffer from several disadvantages. For example, transmembrane proteins can adopt two different orientations when reconstituted into liposomes, and one of these populations may be inaccessible to ligands, to changes in pH or ion concentration in the external solution. Furthermore, optical studies of proteins reconstituted in liposomes suffer from significant light scattering, which diminishes the signal-to-noise value of the measurements. One attractive approach to circumvent these problems is to use nanodiscs, which are phospholipid bilayers encircled by a stabilizing amphipathic helical membrane scaffold protein. These membrane nanodiscs are stable, soluble in aqueous solution without detergent and do not scatter light significantly. In the present study, we have developed a protocol for reconstitution of the aa(3)- and ba(3)-type cytochrome c oxidases into nanodiscs. Furthermore, we studied proton-coupled electron-transfer reactions in these enzymes with microsecond time resolution. The data show that the nanodisc membrane environment accelerates proton uptake in both oxidases. Copyright Â
© 2011 Federation of European Biochemical Societies. All rights reserved.

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Year:  2011        PMID: 22209982      PMCID: PMC4103190          DOI: 10.1016/j.febslet.2011.12.023

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  37 in total

1.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.

Authors:  Margareta Svensson-Ek; Jeff Abramson; Gisela Larsson; Susanna Törnroth; Peter Brzezinski; So Iwata
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

2.  Functional interactions between membrane-bound transporters and membranes.

Authors:  Linda Näsvik Ojemyr; Hyun Ju Lee; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

3.  Crystallographic and online spectral evidence for role of conformational change and conserved water in cytochrome oxidase proton pump.

Authors:  Jian Liu; Ling Qin; Shelagh Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

4.  Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs.

Authors:  Timothy H Bayburt; Yelena V Grinkova; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2006-03-29       Impact factor: 4.013

5.  The cytochrome ba3 oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping.

Authors:  Hsin-Yang Chang; James Hemp; Ying Chen; James A Fee; Robert B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-10       Impact factor: 11.205

6.  Internal electron transfer in cytochrome c oxidase from Rhodobacter sphaeroides.

Authors:  P Adelroth; P Brzezinski; B G Malmström
Journal:  Biochemistry       Date:  1995-03-07       Impact factor: 3.162

Review 7.  Membrane protein assembly into Nanodiscs.

Authors:  Timothy H Bayburt; Stephen G Sligar
Journal:  FEBS Lett       Date:  2009-10-16       Impact factor: 4.124

8.  Crystallographic studies of Xe and Kr binding within the large internal cavity of cytochrome ba3 from Thermus thermophilus: structural analysis and role of oxygen transport channels in the heme-Cu oxidases.

Authors:  V Mitch Luna; Ying Chen; James A Fee; C David Stout
Journal:  Biochemistry       Date:  2008-04-01       Impact factor: 3.162

9.  A conserved steroid binding site in cytochrome C oxidase.

Authors:  Ling Qin; Denise A Mills; Leann Buhrow; Carrie Hiser; Shelagh Ferguson-Miller
Journal:  Biochemistry       Date:  2008-08-30       Impact factor: 3.162

10.  Electron and proton transfer in the ba(3) oxidase from Thermus thermophilus.

Authors:  Irina A Smirnova; Dmitry Zaslavsky; James A Fee; Robert B Gennis; Peter Brzezinski
Journal:  J Bioenerg Biomembr       Date:  2008-08-28       Impact factor: 2.945

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  10 in total

Review 1.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

Review 2.  Nanodiscs as a new tool to examine lipid-protein interactions.

Authors:  Mary A Schuler; Ilia G Denisov; Stephen G Sligar
Journal:  Methods Mol Biol       Date:  2013

3.  Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins.

Authors:  Mark A McLean; Michael C Gregory; Stephen G Sligar
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

4.  Folding of the β-Barrel Membrane Protein OmpA into Nanodiscs.

Authors:  DeeAnn K Asamoto; Guipeun Kang; Judy E Kim
Journal:  Biophys J       Date:  2019-11-28       Impact factor: 4.033

5.  Controlled Co-reconstitution of Multiple Membrane Proteins in Lipid Bilayer Nanodiscs Using DNA as a Scaffold.

Authors:  Thomas Raschle; Chenxiang Lin; Ralf Jungmann; William M Shih; Gerhard Wagner
Journal:  ACS Chem Biol       Date:  2015-09-21       Impact factor: 5.100

Review 6.  Recent advances in nanodisc technology for membrane protein studies (2012-2017).

Authors:  John E Rouck; John E Krapf; Jahnabi Roy; Hannah C Huff; Aditi Das
Journal:  FEBS Lett       Date:  2017-07-06       Impact factor: 4.124

7.  Membrane Protein Activity Induces Specific Molecular Changes in Nanodiscs Monitored by FTIR Difference Spectroscopy.

Authors:  Federico Baserga; Antreas Vorkas; Fucsia Crea; Luiz Schubert; Jheng-Liang Chen; Aoife Redlich; Mariafrancesca La Greca; Julian Storm; Sabine Oldemeyer; Kirsten Hoffmann; Ramona Schlesinger; Joachim Heberle
Journal:  Front Mol Biosci       Date:  2022-06-13

8.  Functional and structural evaluation of bovine heart cytochrome c oxidase incorporated into bicelles.

Authors:  Andrey Musatov; Katarina Siposova; Martina Kubovcikova; Veronika Lysakova; Rastislav Varhac
Journal:  Biochimie       Date:  2015-11-23       Impact factor: 4.079

9.  Radioligand binding to nanodisc-reconstituted membrane transporters assessed by the scintillation proximity assay.

Authors:  Mahmoud L Nasr; Satinder K Singh
Journal:  Biochemistry       Date:  2013-12-30       Impact factor: 3.162

Review 10.  Nanodiscs for structural and functional studies of membrane proteins.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

  10 in total

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