Literature DB >> 28581067

Recent advances in nanodisc technology for membrane protein studies (2012-2017).

John E Rouck1, John E Krapf1, Jahnabi Roy2, Hannah C Huff2, Aditi Das1.   

Abstract

Historically, the main barrier to membrane protein investigations has been the tendency of membrane proteins to aggregate (due to their hydrophobic nature), in aqueous solution as well as on surfaces. The introduction of biomembrane mimetics has since stimulated momentum in the field. One such mimetic, the nanodisc (ND) system, has proved to be an exceptional system for solubilizing membrane proteins. Herein, we critically evaluate the advantages and imperfections of employing nanodiscs in biophysical and biochemical studies. Specifically, we examine the techniques that have been modified to study membrane proteins in nanodiscs. Techniques discussed here include fluorescence microscopy, solution-state/solid-state nuclear magnetic resonance, electron microscopy, small-angle X-ray scattering, and several mass spectroscopy methods. Newer techniques such as SPR, charge-sensitive optical detection, and scintillation proximity assays are also reviewed. Lastly, we cover how nanodiscs are advancing nanotechnology through nanoplasmonic biosensing, lipoprotein-nanoplatelets, and sortase-mediated labeling of nanodiscs.
© 2017 Federation of European Biochemical Societies.

Entities:  

Keywords:  zzm321990ESIzzm321990; zzm321990FRETzzm321990; zzm321990MALDIzzm321990; zzm321990NMRzzm321990; zzm321990SPRzzm321990; electron microscopy; isotope labeling; lipid bilayer; membrane protein; nanodisc

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Substances:

Year:  2017        PMID: 28581067      PMCID: PMC5751705          DOI: 10.1002/1873-3468.12706

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  200 in total

1.  The local phospholipid environment modulates the activation of blood clotting.

Authors:  Andrew W Shaw; Vincent S Pureza; Stephen G Sligar; James H Morrissey
Journal:  J Biol Chem       Date:  2007-01-02       Impact factor: 5.157

2.  The mechanism of a neurotransmitter:sodium symporter--inward release of Na+ and substrate is triggered by substrate in a second binding site.

Authors:  Lei Shi; Matthias Quick; Yongfang Zhao; Harel Weinstein; Jonathan A Javitch
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

3.  Express incorporation of membrane proteins from various human cell types into phospholipid bilayer nanodiscs.

Authors:  Stefanie Mak; Ruoyu Sun; Michael Schmalenberg; Carsten Peters; Peter B Luppa
Journal:  Biochem J       Date:  2017-04-04       Impact factor: 3.857

4.  Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae.

Authors:  Mohan Babu; James Vlasblom; Shuye Pu; Xinghua Guo; Chris Graham; Björn D M Bean; Helen E Burston; Franco J Vizeacoumar; Jamie Snider; Sadhna Phanse; Vincent Fong; Yuen Yi C Tam; Michael Davey; Olha Hnatshak; Navgeet Bajaj; Shamanta Chandran; Thanuja Punna; Constantine Christopolous; Victoria Wong; Analyn Yu; Gouqing Zhong; Joyce Li; Igor Stagljar; Elizabeth Conibear; Shoshana J Wodak; Andrew Emili; Jack F Greenblatt
Journal:  Nature       Date:  2012-09-02       Impact factor: 49.962

5.  Assembly of anthrax toxin pore: lethal-factor complexes into lipid nanodiscs.

Authors:  N Akkaladevi; L Hinton-Chollet; H Katayama; J Mitchell; L Szerszen; S Mukherjee; E P Gogol; B L Pentelute; R J Collier; M T Fisher
Journal:  Protein Sci       Date:  2013-02-26       Impact factor: 6.725

6.  Insights into the molecular recognition of the granuphilin C2A domain with PI(4,5)P2.

Authors:  Chanjuan Wan; Bo Wu; Zhenwei Song; Jiahai Zhang; Huiying Chu; Aoli Wang; Qingsong Liu; Yunyu Shi; Guohui Li; Junfeng Wang
Journal:  Chem Phys Lipids       Date:  2015-01-13       Impact factor: 3.329

7.  bcl-x, a bcl-2-related gene that functions as a dominant regulator of apoptotic cell death.

Authors:  L H Boise; M González-García; C E Postema; L Ding; T Lindsten; L A Turka; X Mao; G Nuñez; C B Thompson
Journal:  Cell       Date:  1993-08-27       Impact factor: 41.582

8.  Kinetic properties of recombinant MAO-A on incorporation into phospholipid nanodisks.

Authors:  F Cruz; D E Edmondson
Journal:  J Neural Transm (Vienna)       Date:  2007-03-29       Impact factor: 3.575

9.  Disassembly of nanodiscs with cholate.

Authors:  Amy Y Shih; Peter L Freddolino; Stephen G Sligar; Klaus Schulten
Journal:  Nano Lett       Date:  2007-05-16       Impact factor: 11.189

10.  Structural and Functional Analysis of Calcium Ion Mediated Binding of 5-Lipoxygenase to Nanodiscs.

Authors:  Ramakrishnan B Kumar; Lin Zhu; Helena Idborg; Olof Rådmark; Per-Johan Jakobsson; Agnes Rinaldo-Matthis; Hans Hebert; Caroline Jegerschöld
Journal:  PLoS One       Date:  2016-03-24       Impact factor: 3.240

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  25 in total

Review 1.  Hydrogen-deuterium exchange mass spectrometry of membrane proteins in lipid nanodiscs.

Authors:  Michelle Redhair; Amanda F Clouser; William M Atkins
Journal:  Chem Phys Lipids       Date:  2019-02-22       Impact factor: 3.329

2.  The hydrodynamic motion of Nanodiscs.

Authors:  Tyler Camp; Mark McLean; Mallory Kato; Lionel Cheruzel; Stephen Sligar
Journal:  Chem Phys Lipids       Date:  2019-02-22       Impact factor: 3.329

Review 3.  Reconstituted Discoidal High-Density Lipoproteins: Bioinspired Nanodiscs with Many Unexpected Applications.

Authors:  Maki Tsujita; Anna Wolska; Daniel A P Gutmann; Alan T Remaley
Journal:  Curr Atheroscler Rep       Date:  2018-11-05       Impact factor: 5.113

4.  MT1-MMP Binds Membranes by Opposite Tips of Its β Propeller to Position It for Pericellular Proteolysis.

Authors:  Tara C Marcink; Jayce A Simoncic; Bo An; Anna M Knapinska; Yan G Fulcher; Narahari Akkaladevi; Gregg B Fields; Steven R Van Doren
Journal:  Structure       Date:  2018-11-21       Impact factor: 5.006

5.  DNA-Corralled Nanodiscs for the Structural and Functional Characterization of Membrane Proteins and Viral Entry.

Authors:  Zhao Zhao; Meng Zhang; James M Hogle; William M Shih; Gerhard Wagner; Mahmoud L Nasr
Journal:  J Am Chem Soc       Date:  2018-08-16       Impact factor: 15.419

6.  Functional Expression and Characterization of Human Myristoylated-Arf1 in Nanodisc Membrane Mimetics.

Authors:  Yifei Li; Olivier Soubias; Jess Li; Shangjin Sun; Paul A Randazzo; R Andrew Byrd
Journal:  Biochemistry       Date:  2019-02-20       Impact factor: 3.162

7.  Programmable Nanodisc Patterning by DNA Origami.

Authors:  Zhao Zhang; Edwin R Chapman
Journal:  Nano Lett       Date:  2020-07-15       Impact factor: 11.189

8.  Folding of the β-Barrel Membrane Protein OmpA into Nanodiscs.

Authors:  DeeAnn K Asamoto; Guipeun Kang; Judy E Kim
Journal:  Biophys J       Date:  2019-11-28       Impact factor: 4.033

Review 9.  Chemical tools for membrane protein structural biology.

Authors:  Qinghai Zhang; Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2019-07-05       Impact factor: 6.809

10.  Automated Removal of Phospholipids from Membrane Proteins for H/D Exchange Mass Spectrometry Workflows.

Authors:  Kyle W Anderson; Elyssia S Gallagher; Jeffrey W Hudgens
Journal:  Anal Chem       Date:  2018-05-09       Impact factor: 6.986

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