Literature DB >> 22203990

Growth, metabolic partitioning, and the size of microorganisms.

Christopher P Kempes1, Stephanie Dutkiewicz, Michael J Follows.   

Abstract

Population growth rate is a fundamental ecological and evolutionary characteristic of living organisms, but individuals must balance the metabolism devoted to biosynthesis and reproduction against the maintenance of existing structure and other functionality. Here we present a mathematical model that relates metabolic partitioning to the form of growth. The model captures the observed growth trajectory of single cells and individuals for a variety of species and taxa spanning prokaryotes, unicellular eukaryotes, and small multicellular eukaryotes. Our analysis suggests that the per-unit costs of biosynthesis and maintenance are conserved across prokaryotes and eukaryotes. However, the relative metabolic expenditure on growth and maintenance of whole organisms clearly differentiates taxa: prokaryotes spend an increasing fraction of their entire metabolism on growth with increasing cell size, whereas eukaryotes devote a diminishing fraction. These differences allow us to predict the minimum and maximum size for each taxonomic group, anticipating observed evolutionary life-history transitions. The framework provides energetic insights into taxonomic tradeoffs related to growth and metabolism and constrains traits that are important for size-structured modeling of microbial communities and their ecological and biogeochemical effects.

Mesh:

Year:  2011        PMID: 22203990      PMCID: PMC3258615          DOI: 10.1073/pnas.1115585109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Thermodynamics of microbial growth and metabolism: an analysis of the current situation.

Authors:  Urs von Stockar; Thomas Maskow; Jingsong Liu; Ian W Marison; Rodrigo Patiño
Journal:  J Biotechnol       Date:  2005-09-26       Impact factor: 3.307

2.  Contrasting size evolution in marine and freshwater diatoms.

Authors:  E Litchman; C A Klausmeier; K Yoshiyama
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

3.  Timing the start of division in E. coli: a single-cell study.

Authors:  G Reshes; S Vanounou; I Fishov; M Feingold
Journal:  Phys Biol       Date:  2008-11-07       Impact factor: 2.583

Review 4.  The microbial engines that drive Earth's biogeochemical cycles.

Authors:  Paul G Falkowski; Tom Fenchel; Edward F Delong
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

5.  Revisiting a model of ontogenetic growth: estimating model parameters from theory and data.

Authors:  Melanie E Moses; Chen Hou; William H Woodruff; Geoffrey B West; Jeffery C Nekola; Wenyun Zuo; James H Brown
Journal:  Am Nat       Date:  2008-05       Impact factor: 3.926

6.  Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Authors:  Peng Lu; Christine Vogel; Rong Wang; Xin Yao; Edward M Marcotte
Journal:  Nat Biotechnol       Date:  2006-12-24       Impact factor: 54.908

7.  Using buoyant mass to measure the growth of single cells.

Authors:  Michel Godin; Francisco Feijó Delgado; Sungmin Son; William H Grover; Andrea K Bryan; Amit Tzur; Paul Jorgensen; Kris Payer; Alan D Grossman; Marc W Kirschner; Scott R Manalis
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

8.  Energy uptake and allocation during ontogeny.

Authors:  Chen Hou; Wenyun Zuo; Melanie E Moses; William H Woodruff; James H Brown; Geoffrey B West
Journal:  Science       Date:  2008-10-31       Impact factor: 47.728

9.  Invariant distribution of promoter activities in Escherichia coli.

Authors:  Alon Zaslaver; Shai Kaplan; Anat Bren; Adrian Jinich; Avi Mayo; Erez Dekel; Uri Alon; Shalev Itzkovitz
Journal:  PLoS Comput Biol       Date:  2009-10-23       Impact factor: 4.475

Review 10.  Toward minimal bacterial cells: evolution vs. design.

Authors:  Andrés Moya; Rosario Gil; Amparo Latorre; Juli Peretó; Maria Pilar Garcillán-Barcia; Fernando de la Cruz
Journal:  FEMS Microbiol Rev       Date:  2008-12-03       Impact factor: 16.408

View more
  32 in total

1.  Morphological optimization for access to dual oxidants in biofilms.

Authors:  Christopher P Kempes; Chinweike Okegbe; Zwoisaint Mears-Clarke; Michael J Follows; Lars E P Dietrich
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-12       Impact factor: 11.205

2.  Models and tests of optimal density and maximal yield for crop plants.

Authors:  Jianming Deng; Jinzhi Ran; Zhiqiang Wang; Zhexuan Fan; Genxuan Wang; Mingfei Ji; Jing Liu; Yun Wang; Jianquan Liu; James H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

3.  The evolution of bacterial cell size: the internal diffusion-constraint hypothesis.

Authors:  Romain Gallet; Cyrille Violle; Nathalie Fromin; Roula Jabbour-Zahab; Brian J Enquist; Thomas Lenormand
Journal:  ISME J       Date:  2017-04-04       Impact factor: 10.302

4.  Role of carbon allocation efficiency in the temperature dependence of autotroph growth rates.

Authors:  Bernardo García-Carreras; Sofía Sal; Daniel Padfield; Dimitrios-Georgios Kontopoulos; Elvire Bestion; C-Elisa Schaum; Gabriel Yvon-Durocher; Samrāt Pawar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-18       Impact factor: 11.205

Review 5.  Microbial life under extreme energy limitation.

Authors:  Tori M Hoehler; Bo Barker Jørgensen
Journal:  Nat Rev Microbiol       Date:  2013-02       Impact factor: 60.633

6.  Prediction of Clearance, Volume of distribution, and Half-life of Drugs in Extremely Low to Low Birth Weight Neonates: An Allometric Approach.

Authors:  Iftekhar Mahmood
Journal:  Eur J Drug Metab Pharmacokinet       Date:  2017-08       Impact factor: 2.441

7.  The interpretation of urban scaling analysis in time.

Authors:  Luís M A Bettencourt; Vicky Chuqiao Yang; José Lobo; Christopher P Kempes; Diego Rybski; Marcus J Hamilton
Journal:  J R Soc Interface       Date:  2020-02-05       Impact factor: 4.118

8.  The thermodynamic efficiency of computations made in cells across the range of life.

Authors:  Christopher P Kempes; David Wolpert; Zachary Cohen; Juan Pérez-Mercader
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

Review 9.  Interactions of photosynthesis with genome size and function.

Authors:  John A Raven; John Beardall; Anthony W D Larkum; Patricia Sánchez-Baracaldo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

10.  Generalized Stoichiometry and Biogeochemistry for Astrobiological Applications.

Authors:  Christopher P Kempes; Michael J Follows; Hillary Smith; Heather Graham; Christopher H House; Simon A Levin
Journal:  Bull Math Biol       Date:  2021-05-18       Impact factor: 1.758

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.