Literature DB >> 16185782

Thermodynamics of microbial growth and metabolism: an analysis of the current situation.

Urs von Stockar1, Thomas Maskow, Jingsong Liu, Ian W Marison, Rodrigo Patiño.   

Abstract

This paper attempts to review in how far thermodynamic analysis can be used to understand and predict the performance of microorganisms with respect to growth and bio-product synthesis. In the first part, a simple thermodynamic model of microbial growth is developed which explains the relationship between the driving force for growth in terms of Gibbs energy dissipation and biomass yield. From the currently available literature, it appears that the Gibbs energy dissipation per C-mol of biomass grown, which represents the driving force for chemotrophic growth, may have been adapted by evolutionary processes to strike a reasonable compromise between metabolic rate and growth efficiency. Based on empirical correlations of the C-molar Gibbs energy dissipation, the wide variety of biomass yields observed in nature can be explained and roughly predicted. This type of analysis may be highly useful in environmental applications, where such wide variations occur. It is however not able to predict biomass yields in very complex systems such as mammalian cells nor is it able to predict or to assess bio-product or recombinant protein yields. For this purpose, a much more sophisticated treatment that accounts for individual metabolic pathways separately is required. Based on glycolysis as a test example, it is shown in the last part that simple thermodynamic analysis leads to erroneous conclusions even in well-known, simple cases. Potential sources for errors have been analyzed and can be used to identify the most important needs for future research.

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Year:  2005        PMID: 16185782     DOI: 10.1016/j.jbiotec.2005.08.012

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  21 in total

1.  Growth, metabolic partitioning, and the size of microorganisms.

Authors:  Christopher P Kempes; Stephanie Dutkiewicz; Michael J Follows
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

2.  Microbial catabolic activities are naturally selected by metabolic energy harvest rate.

Authors:  Rebeca González-Cabaleiro; Irina D Ofiţeru; Juan M Lema; Jorge Rodríguez
Journal:  ISME J       Date:  2015-07-10       Impact factor: 10.302

3.  INDISIM-Denitrification, an individual-based model for study the denitrification process.

Authors:  Pablo Araujo-Granda; Anna Gras; Marta Ginovart; Vincent Moulton
Journal:  J Ind Microbiol Biotechnol       Date:  2019-11-05       Impact factor: 3.346

4.  Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains.

Authors:  André B Canelas; Nicola Harrison; Alessandro Fazio; Jie Zhang; Juha-Pekka Pitkänen; Joost van den Brink; Barbara M Bakker; Lara Bogner; Jildau Bouwman; Juan I Castrillo; Ayca Cankorur; Pramote Chumnanpuen; Pascale Daran-Lapujade; Duygu Dikicioglu; Karen van Eunen; Jennifer C Ewald; Joseph J Heijnen; Betul Kirdar; Ismo Mattila; Femke I C Mensonides; Anja Niebel; Merja Penttilä; Jack T Pronk; Matthias Reuss; Laura Salusjärvi; Uwe Sauer; David Sherman; Martin Siemann-Herzberg; Hans Westerhoff; Johannes de Winde; Dina Petranovic; Stephen G Oliver; Christopher T Workman; Nicola Zamboni; Jens Nielsen
Journal:  Nat Commun       Date:  2010       Impact factor: 14.919

5.  Elucidation of the trigonelline degradation pathway reveals previously undescribed enzymes and metabolites.

Authors:  Nadia Perchat; Pierre-Loïc Saaidi; Ekaterina Darii; Christine Pellé; Jean-Louis Petit; Marielle Besnard-Gonnet; Véronique de Berardinis; Maeva Dupont; Alexandra Gimbernat; Marcel Salanoubat; Cécile Fischer; Alain Perret
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-23       Impact factor: 11.205

6.  Production host selection for asymmetric styrene epoxidation: Escherichia coli vs. solvent-tolerant Pseudomonas.

Authors:  Daniel Kuhn; Bruno Bühler; Andreas Schmid
Journal:  J Ind Microbiol Biotechnol       Date:  2012-04-17       Impact factor: 3.346

7.  Energetic scaling in microbial growth.

Authors:  Salvatore Calabrese; Arjun Chakrawal; Stefano Manzoni; Philippe Van Cappellen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

8.  Metabolic efficiency of Geobacter sulfurreducens growing on anodes with different redox potentials.

Authors:  Julian Bosch; Keun-Young Lee; Siang-Fu Hong; Falk Harnisch; Uwe Schröder; Rainer U Meckenstock
Journal:  Curr Microbiol       Date:  2014-02-20       Impact factor: 2.188

9.  Expression of phosphofructokinase in Neisseria meningitidis.

Authors:  Gino J E Baart; Marc Langenhof; Bas van de Waterbeemd; Hendrik-Jan Hamstra; Bert Zomer; Leo A van der Pol; E C Beuvery; Johannes Tramper; Dirk E Martens
Journal:  Microbiology (Reading)       Date:  2009-10-01       Impact factor: 2.777

10.  Electron carriers in microbial sulfate reduction inferred from experimental and environmental sulfur isotope fractionations.

Authors:  Christine B Wenk; Boswell A Wing; Itay Halevy
Journal:  ISME J       Date:  2017-10-31       Impact factor: 11.217

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