Literature DB >> 24335705

Morphological optimization for access to dual oxidants in biofilms.

Christopher P Kempes1, Chinweike Okegbe, Zwoisaint Mears-Clarke, Michael J Follows, Lars E P Dietrich.   

Abstract

A major theme driving research in biology is the relationship between form and function. In particular, a longstanding goal has been to understand how the evolution of multicellularity conferred fitness advantages. Here we show that biofilms of the bacterium Pseudomonas aeruginosa produce structures that maximize cellular reproduction. Specifically, we develop a mathematical model of resource availability and metabolic response within colony features. This analysis accurately predicts the measured distribution of two types of electron acceptors: oxygen, which is available from the atmosphere, and phenazines, redox-active antibiotics produced by the bacterium. Using this model, we demonstrate that the geometry of colony structures is optimal with respect to growth efficiency. Because our model is based on resource dynamics, we also can anticipate shifts in feature geometry based on changes to the availability of electron acceptors, including variations in the external availability of oxygen and genetic manipulation that renders the cells incapable of phenazine production.

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Year:  2013        PMID: 24335705      PMCID: PMC3890773          DOI: 10.1073/pnas.1315521110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  Supply-demand balance and metabolic scaling.

Authors:  Jayanth R Banavar; John Damuth; Amos Maritan; Andrea Rinaldo
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

2.  Osmotic spreading of Bacillus subtilis biofilms driven by an extracellular matrix.

Authors:  Agnese Seminara; Thomas E Angelini; James N Wilking; Hera Vlamakis; Senan Ebrahim; Roberto Kolter; David A Weitz; Michael P Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

3.  Large colonial organisms with coordinated growth in oxygenated environments 2.1 Gyr ago.

Authors:  Abderrazak El Albani; Stefan Bengtson; Donald E Canfield; Andrey Bekker; Roberto Macchiarelli; Arnaud Mazurier; Emma U Hammarlund; Philippe Boulvais; Jean-Jacques Dupuy; Claude Fontaine; Franz T Fürsich; François Gauthier-Lafaye; Philippe Janvier; Emmanuelle Javaux; Frantz Ossa Ossa; Anne-Catherine Pierson-Wickmann; Armelle Riboulleau; Paul Sardini; Daniel Vachard; Martin Whitehouse; Alain Meunier
Journal:  Nature       Date:  2010-07-01       Impact factor: 49.962

4.  Venation networks and the origin of the leaf economics spectrum.

Authors:  Benjamin Blonder; Cyrille Violle; Lisa Patrick Bentley; Brian J Enquist
Journal:  Ecol Lett       Date:  2010-11-15       Impact factor: 9.492

5.  Endogenous phenazine antibiotics promote anaerobic survival of Pseudomonas aeruginosa via extracellular electron transfer.

Authors:  Yun Wang; Suzanne E Kern; Dianne K Newman
Journal:  J Bacteriol       Date:  2010-01       Impact factor: 3.490

6.  Liquid transport facilitated by channels in Bacillus subtilis biofilms.

Authors:  James N Wilking; Vasily Zaburdaev; Michael De Volder; Richard Losick; Michael P Brenner; David A Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

7.  Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients.

Authors:  Dieter Worlitzsch; Robert Tarran; Martina Ulrich; Ute Schwab; Aynur Cekici; Keith C Meyer; Peter Birrer; Gabriel Bellon; Jürgen Berger; Tilo Weiss; Konrad Botzenhart; James R Yankaskas; Scott Randell; Richard C Boucher; Gerd Döring
Journal:  J Clin Invest       Date:  2002-02       Impact factor: 14.808

8.  Individual-based modelling of biofilms.

Authors:  J U Kreft; C Picioreanu; J W Wimpenny; M C van Loosdrecht
Journal:  Microbiology       Date:  2001-11       Impact factor: 2.777

9.  Genes involved in matrix formation in Pseudomonas aeruginosa PA14 biofilms.

Authors:  Lisa Friedman; Roberto Kolter
Journal:  Mol Microbiol       Date:  2004-02       Impact factor: 3.501

10.  Pyocyanin alters redox homeostasis and carbon flux through central metabolic pathways in Pseudomonas aeruginosa PA14.

Authors:  Alexa Price-Whelan; Lars E P Dietrich; Dianne K Newman
Journal:  J Bacteriol       Date:  2007-05-25       Impact factor: 3.490

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  42 in total

1.  Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models.

Authors:  Jonas S Madsen; Yu-Cheng Lin; Georgia R Squyres; Alexa Price-Whelan; Ana de Santiago Torio; Angela Song; William C Cornell; Søren J Sørensen; Joao B Xavier; Lars E P Dietrich
Journal:  Appl Environ Microbiol       Date:  2015-10-02       Impact factor: 4.792

2.  Interdependency of Respiratory Metabolism and Phenazine-Associated Physiology in Pseudomonas aeruginosa PA14.

Authors:  Jeanyoung Jo; Alexa Price-Whelan; William Cole Cornell; Lars E P Dietrich
Journal:  J Bacteriol       Date:  2020-01-29       Impact factor: 3.490

3.  Pseudomonas aeruginosa PumA acts on an endogenous phenazine to promote self-resistance.

Authors:  Abigail J Sporer; Christopher Beierschmitt; Anastasia Bendebury; Katherine E Zink; Alexa Price-Whelan; Marisa C Buzzeo; Laura M Sanchez; Lars E P Dietrich
Journal:  Microbiology (Reading)       Date:  2018-04-09       Impact factor: 2.777

Review 4.  The mechanical world of bacteria.

Authors:  Alexandre Persat; Carey D Nadell; Minyoung Kevin Kim; Francois Ingremeau; Albert Siryaporn; Knut Drescher; Ned S Wingreen; Bonnie L Bassler; Zemer Gitai; Howard A Stone
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

Review 5.  The Colorful World of Extracellular Electron Shuttles.

Authors:  Nathaniel R Glasser; Scott H Saunders; Dianne K Newman
Journal:  Annu Rev Microbiol       Date:  2017-07-21       Impact factor: 15.500

Review 6.  The Potential for Redox-Active Metabolites To Enhance or Unlock Anaerobic Survival Metabolisms in Aerobes.

Authors:  John A Ciemniecki; Dianne K Newman
Journal:  J Bacteriol       Date:  2020-05-11       Impact factor: 3.490

7.  The Matrix Reloaded: Probing the Extracellular Matrix Synchronizes Bacterial Communities.

Authors:  Nitai Steinberg; Ilana Kolodkin-Gal
Journal:  J Bacteriol       Date:  2015-03-30       Impact factor: 3.490

8.  Bifunctionality of a biofilm matrix protein controlled by redox state.

Authors:  Sofia Arnaouteli; Ana Sofia Ferreira; Marieke Schor; Ryan J Morris; Keith M Bromley; Jeanyoung Jo; Krista L Cortez; Tetyana Sukhodub; Alan R Prescott; Lars E P Dietrich; Cait E MacPhee; Nicola R Stanley-Wall
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-11       Impact factor: 11.205

9.  Nonuniform growth and surface friction determine bacterial biofilm morphology on soft substrates.

Authors:  Chenyi Fei; Sheng Mao; Jing Yan; Ricard Alert; Howard A Stone; Bonnie L Bassler; Ned S Wingreen; Andrej Košmrlj
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-19       Impact factor: 11.205

Review 10.  Emerging Roles of Functional Bacterial Amyloids in Gene Regulation, Toxicity, and Immunomodulation.

Authors:  Nir Salinas; Tatyana L Povolotsky; Meytal Landau; Ilana Kolodkin-Gal
Journal:  Microbiol Mol Biol Rev       Date:  2020-11-25       Impact factor: 11.056

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