Literature DB >> 22203971

Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria.

Michael W Sneddon1, William Pontius, Thierry Emonet.   

Abstract

Individual neuronal, signal transduction, and regulatory pathways often control multiple stochastic downstream actuators, which raises the question of how coordinated response to a single input can be achieved when individual actuators fluctuate independently. In Escherichia coli, the bacterial chemotaxis pathway controls the activity of multiple flagellar motors to generate the run-and-tumble motion of the cell. High-resolution microscopy experiments have identified the key conformational changes adopted by individual flagella during this process. By incorporating these observations into a stochastic model of the flagellar bundle, we demonstrate that the presence of multiple motors imposes a trade-off on chemotactic performance. Multiple motors reduce the latency of the response below the time scale of the stochastic switching of a single motor, which improves performance on steep gradients of attractants. However, the uncoordinated switching of multiple motors interrupts and shortens cell runs, which thereby reduces signal detection and performance on shallow gradients. Remarkably, when slow fluctuations generated by the adaptation mechanism of the chemotaxis system are incorporated in the model at levels measured in experiments, the chemotactic sensitivity and performance in shallow gradients is partially restored with marginal effects for steep gradients. The noise is beneficial because it simultaneously generates long events in the statistics of individual motors and coordinates the motors to generate a long tail in the run length distribution of the cell. Occasional long runs are known to enhance exploration of random walkers. Here we show that they have the additional benefit of enhancing the sensitivity of the bacterium to very shallow gradients.

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Year:  2011        PMID: 22203971      PMCID: PMC3271881          DOI: 10.1073/pnas.1113706109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

Review 2.  Making sense of it all: bacterial chemotaxis.

Authors:  George H Wadhams; Judith P Armitage
Journal:  Nat Rev Mol Cell Biol       Date:  2004-12       Impact factor: 94.444

3.  AgentCell: a digital single-cell assay for bacterial chemotaxis.

Authors:  Thierry Emonet; Charles M Macal; Michael J North; Charles E Wickersham; Philippe Cluzel
Journal:  Bioinformatics       Date:  2005-03-17       Impact factor: 6.937

4.  An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

5.  How white noise generates power-law switching in bacterial flagellar motors.

Authors:  Yuhai Tu; G Grinstein
Journal:  Phys Rev Lett       Date:  2005-05-25       Impact factor: 9.161

6.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

7.  Precise adaptation in bacterial chemotaxis through "assistance neighborhoods".

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

8.  Impulse responses in bacterial chemotaxis.

Authors:  S M Block; J E Segall; H C Berg
Journal:  Cell       Date:  1982-11       Impact factor: 41.582

9.  A study of bacterial flagellar bundling.

Authors:  Heather Flores; Edgar Lobaton; Stefan Méndez-Diez; Svetlana Tlupova; Ricardo Cortez
Journal:  Bull Math Biol       Date:  2005-01       Impact factor: 1.758

10.  Coordination of flagella on filamentous cells of Escherichia coli.

Authors:  A Ishihara; J E Segall; S M Block; H C Berg
Journal:  J Bacteriol       Date:  1983-07       Impact factor: 3.490

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  26 in total

1.  Robustness of a rhythmic circuit to short- and long-term temperature changes.

Authors:  Lamont S Tang; Adam L Taylor; Anatoly Rinberg; Eve Marder
Journal:  J Neurosci       Date:  2012-07-18       Impact factor: 6.167

2.  Motor Adaptive Remodeling Speeds Up Bacterial Chemotactic Adaptation.

Authors:  Chi Zhang; Rui He; Rongjing Zhang; Junhua Yuan
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

3.  Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET.

Authors:  Johannes M Keegstra; Keita Kamino; François Anquez; Milena D Lazova; Thierry Emonet; Thomas S Shimizu
Journal:  Elife       Date:  2017-12-12       Impact factor: 8.140

4.  Bacteria push the limits of chemotactic precision to navigate dynamic chemical gradients.

Authors:  Douglas R Brumley; Francesco Carrara; Andrew M Hein; Yutaka Yawata; Simon A Levin; Roman Stocker
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-16       Impact factor: 11.205

5.  Chemotactic adaptation kinetics of individual Escherichia coli cells.

Authors:  Taejin L Min; Patrick J Mears; Ido Golding; Yann R Chemla
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-07       Impact factor: 11.205

6.  Ultrasensitivity of an adaptive bacterial motor.

Authors:  Junhua Yuan; Howard C Berg
Journal:  J Mol Biol       Date:  2013-02-26       Impact factor: 5.469

7.  Noise-Induced Increase of Sensitivity in Bacterial Chemotaxis.

Authors:  Rui He; Rongjing Zhang; Junhua Yuan
Journal:  Biophys J       Date:  2016-07-26       Impact factor: 4.033

8.  Coordinated switching of bacterial flagellar motors: evidence for direct motor-motor coupling?

Authors:  Bo Hu; Yuhai Tu
Journal:  Phys Rev Lett       Date:  2013-04-09       Impact factor: 9.161

Review 9.  Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis.

Authors:  Adam James Waite; Nicholas W Frankel; Thierry Emonet
Journal:  Annu Rev Biophys       Date:  2018-04-04       Impact factor: 12.981

10.  Direct Mapping from Intracellular Chemotaxis Signaling to Single-Cell Swimming Behavior.

Authors:  Antai Tao; Rongjing Zhang; Junhua Yuan
Journal:  Biophys J       Date:  2020-11-13       Impact factor: 4.033

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