Literature DB >> 22679285

Chemotactic adaptation kinetics of individual Escherichia coli cells.

Taejin L Min1, Patrick J Mears, Ido Golding, Yann R Chemla.   

Abstract

Escherichia coli chemotaxis serves as a paradigm for the way living cells respond and adapt to changes in their environment. The chemotactic response has been characterized at the level of individual flagellar motors and in populations of swimming cells. However, it has not been previously possible to quantify accurately the adaptive response of a single, multiflagellated cell. Here, we use our recently developed optical trapping technique to characterize the swimming behavior of individual bacteria as they respond to sudden changes in the chemical environment. We follow the adaptation kinetics of E. coli to varying magnitudes of step-up and step-down changes in concentration of chemoattractant. We quantify two features of adaptation and how they vary with stimulus strength: abruptness (the degree to which return to prestimulus behavior occurs within a small number of run/tumble events) and overshoot (the degree of excessive response before the return to prestimulus behavior). We also characterize the asymmetry between step-up and step-down responses, observed at the single-cell level. Our findings provide clues to an improved understanding of chemotactic adaptation.

Entities:  

Mesh:

Year:  2012        PMID: 22679285      PMCID: PMC3382544          DOI: 10.1073/pnas.1120218109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells.

Authors:  P Cluzel; M Surette; S Leibler
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

2.  Real-time imaging of fluorescent flagellar filaments.

Authors:  L Turner; W S Ryu; H C Berg
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

3.  Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria.

Authors:  Michael W Sneddon; William Pontius; Thierry Emonet
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

4.  A dynamic-signaling-team model for chemotaxis receptors in Escherichia coli.

Authors:  Clinton H Hansen; Victor Sourjik; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-20       Impact factor: 11.205

5.  Interdependence of behavioural variability and response to small stimuli in bacteria.

Authors:  Heungwon Park; William Pontius; Calin C Guet; John F Marko; Thierry Emonet; Philippe Cluzel
Journal:  Nature       Date:  2010-11-14       Impact factor: 49.962

6.  Coordinated reversal of flagellar motors on a single Escherichia coli cell.

Authors:  Shun Terasawa; Hajime Fukuoka; Yuichi Inoue; Takashi Sagawa; Hiroto Takahashi; Akihiko Ishijima
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

7.  A modular gradient-sensing network for chemotaxis in Escherichia coli revealed by responses to time-varying stimuli.

Authors:  Thomas S Shimizu; Yuhai Tu; Howard C Berg
Journal:  Mol Syst Biol       Date:  2010-06-22       Impact factor: 11.429

8.  Adapt locally and act globally: strategy to maintain high chemoreceptor sensitivity in complex environments.

Authors:  Ganhui Lan; Sonja Schulmeister; Victor Sourjik; Yuhai Tu
Journal:  Mol Syst Biol       Date:  2011-03-15       Impact factor: 11.429

9.  Bacterial chemotaxis in an optical trap.

Authors:  Tuba Altindal; Suddhashil Chattopadhyay; Xiao-Lun Wu
Journal:  PLoS One       Date:  2011-04-08       Impact factor: 3.240

10.  Adaptation at the output of the chemotaxis signalling pathway.

Authors:  Junhua Yuan; Richard W Branch; Basarab G Hosu; Howard C Berg
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

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  22 in total

1.  Cell responses only partially shape cell-to-cell variations in protein abundances in Escherichia coli chemotaxis.

Authors:  Sayak Mukherjee; Sang-Cheol Seok; Veronica J Vieland; Jayajit Das
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

2.  High specificity in CheR methyltransferase function: CheR2 of Pseudomonas putida is essential for chemotaxis, whereas CheR1 is involved in biofilm formation.

Authors:  Cristina García-Fontana; José Antonio Reyes-Darias; Francisco Muñoz-Martínez; Carlos Alfonso; Bertrand Morel; Juan Luis Ramos; Tino Krell
Journal:  J Biol Chem       Date:  2013-05-15       Impact factor: 5.157

3.  Motor Adaptive Remodeling Speeds Up Bacterial Chemotactic Adaptation.

Authors:  Chi Zhang; Rui He; Rongjing Zhang; Junhua Yuan
Journal:  Biophys J       Date:  2018-03-13       Impact factor: 4.033

4.  Blue Light Is a Universal Signal for Escherichia coli Chemoreceptors.

Authors:  Tatyana Perlova; Martin Gruebele; Yann R Chemla
Journal:  J Bacteriol       Date:  2019-05-08       Impact factor: 3.490

5.  High-Resolution "Fleezers": Dual-Trap Optical Tweezers Combined with Single-Molecule Fluorescence Detection.

Authors:  Kevin D Whitley; Matthew J Comstock; Yann R Chemla
Journal:  Methods Mol Biol       Date:  2017

6.  Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET.

Authors:  Johannes M Keegstra; Keita Kamino; François Anquez; Milena D Lazova; Thierry Emonet; Thomas S Shimizu
Journal:  Elife       Date:  2017-12-12       Impact factor: 8.140

7.  Protein structure. Direct observation of structure-function relationship in a nucleic acid-processing enzyme.

Authors:  Matthew J Comstock; Kevin D Whitley; Haifeng Jia; Joshua Sokoloski; Timothy M Lohman; Taekjip Ha; Yann R Chemla
Journal:  Science       Date:  2015-04-16       Impact factor: 47.728

8.  Data-driven quantification of the robustness and sensitivity of cell signaling networks.

Authors:  Sayak Mukherjee; Sang-Cheol Seok; Veronica J Vieland; Jayajit Das
Journal:  Phys Biol       Date:  2013-10-29       Impact factor: 2.583

9.  Automated single cell microbioreactor for monitoring intracellular dynamics and cell growth in free solution.

Authors:  Eric M Johnson-Chavarria; Utsav Agrawal; Melikhan Tanyeri; Thomas E Kuhlman; Charles M Schroeder
Journal:  Lab Chip       Date:  2014-05-19       Impact factor: 6.799

10.  Direct Mapping from Intracellular Chemotaxis Signaling to Single-Cell Swimming Behavior.

Authors:  Antai Tao; Rongjing Zhang; Junhua Yuan
Journal:  Biophys J       Date:  2020-11-13       Impact factor: 4.033

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