Literature DB >> 22199959

N-[(E)-Anthracen-9-yl-methyl-idene]-3,4-dimethyl-1,2-oxazol-5-amine.

Abdullah M Asiri, Abdulrahman O Al-Youbi, Salman A Khan, M Nawaz Tahir.   

Abstract

In the title compound, C(20)H(16)N(2)O, an intra-molecular C-H⋯N forms an S(6) ring motif. In the crystal, the mol-ecules are stacked with their anthracene ring planes in sheets along [100].

Entities:  

Year:  2011        PMID: 22199959      PMCID: PMC3239111          DOI: 10.1107/S1600536811050471

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of compounds containing azomethine groups, see: Khuhawar et al. (2004 ▶). Schiff base compounds demonstrate anti­bacterial (Asiri & Khan, 2010 ▶), anti­tumor activity (Saxena & Tandon, 1983 ▶) and anti-HIV activity (Pandeya et al., 1999 ▶). For related structures, see: Asiri et al. (2011 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H16N2O M = 300.35 Monoclinic, a = 22.4919 (14) Å b = 6.1666 (4) Å c = 22.6801 (13) Å β = 102.015 (2)° V = 3076.8 (3) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.32 × 0.24 × 0.22 mm

Data collection

Bruker KAPPA APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.975, T max = 0.980 12925 measured reflections 3193 independent reflections 2381 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.130 S = 1.04 3193 reflections 210 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811050471/fk2045sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050471/fk2045Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050471/fk2045Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N2OF(000) = 1264
Mr = 300.35Dx = 1.297 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2381 reflections
a = 22.4919 (14) Åθ = 1.9–26.5°
b = 6.1666 (4) ŵ = 0.08 mm1
c = 22.6801 (13) ÅT = 296 K
β = 102.015 (2)°Prism, red
V = 3076.8 (3) Å30.32 × 0.24 × 0.22 mm
Z = 8
Bruker KAPPA APEXII CCD diffractometer3193 independent reflections
Radiation source: fine-focus sealed tube2381 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 8.10 pixels mm-1θmax = 26.5°, θmin = 1.9°
ω scansh = −28→27
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)k = −7→7
Tmin = 0.975, Tmax = 0.980l = −23→28
12925 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: geom and difmap
wR(F2) = 0.130H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0637P)2 + 1.2672P] where P = (Fo2 + 2Fc2)/3
3193 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.09676 (5)0.50025 (19)0.05196 (5)0.0516 (4)
N10.10276 (6)0.2014 (2)0.11940 (6)0.0459 (4)
N20.05953 (7)0.6861 (3)0.03694 (7)0.0584 (5)
C10.16650 (6)−0.1894 (3)0.17670 (6)0.0379 (4)
C20.12182 (7)−0.1253 (3)0.20964 (7)0.0486 (5)
C30.10875 (8)−0.2518 (3)0.25450 (8)0.0580 (6)
C40.13754 (8)−0.4522 (3)0.26932 (8)0.0606 (7)
C50.17975 (8)−0.5201 (3)0.23969 (8)0.0528 (6)
C60.19672 (7)−0.3919 (3)0.19346 (7)0.0403 (5)
C70.24311 (7)−0.4589 (3)0.16590 (7)0.0429 (5)
C80.26386 (7)−0.3322 (3)0.12393 (6)0.0393 (5)
C90.31446 (7)−0.3980 (3)0.09933 (7)0.0497 (6)
C100.33622 (8)−0.2712 (3)0.06009 (8)0.0556 (6)
C110.30869 (8)−0.0702 (3)0.04332 (8)0.0554 (6)
C120.25992 (7)−0.0016 (3)0.06472 (7)0.0476 (5)
C130.23446 (6)−0.1286 (2)0.10601 (6)0.0365 (5)
C140.18386 (6)−0.0631 (2)0.13028 (6)0.0356 (4)
C150.15128 (7)0.1314 (2)0.10573 (7)0.0398 (5)
C160.07545 (7)0.3889 (3)0.09501 (7)0.0415 (5)
C170.02670 (7)0.4911 (3)0.10808 (7)0.0447 (5)
C180.01918 (7)0.6751 (3)0.07070 (8)0.0501 (6)
C19−0.02801 (9)0.8473 (3)0.06716 (10)0.0733 (8)
C20−0.00958 (9)0.4243 (4)0.15280 (9)0.0675 (7)
H20.101260.005180.200300.0584*
H30.08009−0.204260.275820.0696*
H40.12735−0.537540.299560.0728*
H50.19841−0.653630.249460.0633*
H70.26093−0.593680.175930.0515*
H90.33285−0.531050.110560.0596*
H100.36913−0.316820.044340.0667*
H110.324240.018090.016920.0666*
H120.242560.131870.052170.0571*
H150.167240.210790.077790.0478*
H19A−0.023710.916850.105690.1099*
H19B−0.067680.783250.056120.1099*
H19C−0.023010.952610.037400.1099*
H20A0.007250.293880.172660.1013*
H20B−0.050880.398420.132540.1013*
H20C−0.008550.537330.182090.1013*
U11U22U33U12U13U23
O10.0536 (7)0.0504 (7)0.0565 (7)0.0142 (5)0.0243 (5)0.0109 (5)
N10.0428 (7)0.0438 (8)0.0535 (8)0.0056 (6)0.0158 (6)0.0045 (6)
N20.0621 (9)0.0510 (9)0.0640 (10)0.0189 (7)0.0177 (8)0.0137 (7)
C10.0335 (7)0.0412 (8)0.0383 (8)−0.0033 (6)0.0061 (6)−0.0001 (6)
C20.0451 (9)0.0550 (10)0.0495 (9)0.0033 (8)0.0184 (7)0.0062 (8)
C30.0509 (10)0.0745 (13)0.0539 (10)−0.0015 (9)0.0232 (8)0.0084 (9)
C40.0559 (11)0.0746 (13)0.0533 (10)−0.0048 (10)0.0157 (8)0.0243 (10)
C50.0492 (10)0.0527 (10)0.0539 (10)−0.0015 (8)0.0051 (8)0.0167 (8)
C60.0380 (8)0.0401 (9)0.0403 (8)−0.0045 (7)0.0022 (6)0.0036 (7)
C70.0411 (8)0.0374 (8)0.0472 (9)0.0045 (7)0.0021 (7)0.0024 (7)
C80.0360 (8)0.0410 (9)0.0394 (8)0.0027 (6)0.0043 (6)−0.0051 (7)
C90.0426 (9)0.0536 (10)0.0522 (10)0.0125 (8)0.0085 (7)−0.0051 (8)
C100.0421 (9)0.0734 (13)0.0548 (10)0.0113 (9)0.0180 (8)−0.0067 (9)
C110.0489 (10)0.0699 (12)0.0530 (10)0.0021 (9)0.0232 (8)0.0059 (9)
C120.0455 (9)0.0513 (10)0.0489 (9)0.0067 (8)0.0168 (7)0.0078 (8)
C130.0341 (8)0.0395 (9)0.0356 (7)0.0008 (6)0.0064 (6)−0.0028 (6)
C140.0329 (7)0.0372 (8)0.0368 (7)0.0000 (6)0.0076 (6)−0.0010 (6)
C150.0392 (8)0.0405 (9)0.0429 (8)0.0026 (7)0.0157 (6)0.0023 (7)
C160.0407 (8)0.0419 (9)0.0437 (8)0.0021 (7)0.0132 (7)0.0006 (7)
C170.0396 (8)0.0453 (9)0.0507 (9)0.0041 (7)0.0127 (7)−0.0054 (7)
C180.0442 (9)0.0495 (10)0.0553 (10)0.0090 (8)0.0077 (8)−0.0045 (8)
C190.0640 (13)0.0621 (13)0.0937 (16)0.0253 (10)0.0162 (11)−0.0007 (11)
C200.0554 (11)0.0771 (14)0.0791 (13)0.0055 (10)0.0347 (10)−0.0032 (11)
O1—N21.418 (2)C14—C151.4545 (19)
O1—C161.360 (2)C16—C171.350 (2)
N1—C151.271 (2)C17—C181.405 (3)
N1—C161.371 (2)C17—C201.486 (3)
N2—C181.305 (2)C18—C191.492 (3)
C1—C21.427 (2)C2—H20.9300
C1—C61.435 (3)C3—H30.9300
C1—C141.428 (2)C4—H40.9300
C2—C31.362 (2)C5—H50.9300
C3—C41.403 (3)C7—H70.9300
C4—C51.339 (3)C9—H90.9300
C5—C61.427 (2)C10—H100.9300
C6—C71.386 (2)C11—H110.9300
C7—C81.385 (2)C12—H120.9300
C8—C91.427 (2)C15—H150.9300
C8—C131.438 (2)C19—H19A0.9600
C9—C101.351 (2)C19—H19B0.9600
C10—C111.402 (3)C19—H19C0.9600
C11—C121.356 (2)C20—H20A0.9600
C12—C131.429 (2)C20—H20B0.9600
C13—C141.4220 (19)C20—H20C0.9600
N2—O1—C16107.56 (12)N2—C18—C19120.35 (17)
C15—N1—C16121.58 (14)C17—C18—C19127.02 (16)
O1—N2—C18105.36 (15)C1—C2—H2119.00
C2—C1—C6116.67 (14)C3—C2—H2119.00
C2—C1—C14124.43 (15)C2—C3—H3119.00
C6—C1—C14118.88 (13)C4—C3—H3119.00
C1—C2—C3121.16 (16)C3—C4—H4120.00
C2—C3—C4121.52 (17)C5—C4—H4120.00
C3—C4—C5119.68 (17)C4—C5—H5119.00
C4—C5—C6121.43 (17)C6—C5—H5119.00
C1—C6—C5119.50 (15)C6—C7—H7119.00
C1—C6—C7119.97 (15)C8—C7—H7119.00
C5—C6—C7120.51 (16)C8—C9—H9119.00
C6—C7—C8122.32 (17)C10—C9—H9119.00
C7—C8—C9121.24 (16)C9—C10—H10120.00
C7—C8—C13119.07 (14)C11—C10—H10120.00
C9—C8—C13119.68 (14)C10—C11—H11119.00
C8—C9—C10121.40 (17)C12—C11—H11119.00
C9—C10—C11119.36 (17)C11—C12—H12119.00
C10—C11—C12121.53 (17)C13—C12—H12119.00
C11—C12—C13121.87 (16)N1—C15—H15117.00
C8—C13—C12116.13 (13)C14—C15—H15117.00
C8—C13—C14119.78 (12)C18—C19—H19A109.00
C12—C13—C14124.07 (12)C18—C19—H19B109.00
C1—C14—C13119.62 (12)C18—C19—H19C109.00
C1—C14—C15122.60 (13)H19A—C19—H19B109.00
C13—C14—C15117.78 (12)H19A—C19—H19C109.00
N1—C15—C14125.21 (14)H19B—C19—H19C109.00
O1—C16—N1121.36 (14)C17—C20—H20A109.00
O1—C16—C17110.22 (15)C17—C20—H20B109.00
N1—C16—C17128.42 (15)C17—C20—H20C109.00
C16—C17—C18104.22 (14)H20A—C20—H20B109.00
C16—C17—C20127.36 (17)H20A—C20—H20C109.00
C18—C17—C20128.41 (17)H20B—C20—H20C109.00
N2—C18—C17112.63 (16)
C16—O1—N2—C18−0.22 (18)C6—C7—C8—C13−3.1 (2)
N2—O1—C16—N1−179.18 (14)C7—C8—C9—C10−177.53 (16)
N2—O1—C16—C170.46 (18)C13—C8—C9—C101.1 (2)
C16—N1—C15—C14178.72 (14)C7—C8—C13—C12177.20 (14)
C15—N1—C16—O14.6 (2)C7—C8—C13—C14−1.6 (2)
C15—N1—C16—C17−174.96 (17)C9—C8—C13—C12−1.5 (2)
O1—N2—C18—C17−0.09 (19)C9—C8—C13—C14179.74 (14)
O1—N2—C18—C19179.65 (15)C8—C9—C10—C110.3 (3)
C6—C1—C2—C3−0.2 (2)C9—C10—C11—C12−1.3 (3)
C14—C1—C2—C3−178.22 (15)C10—C11—C12—C130.8 (3)
C2—C1—C6—C52.0 (2)C11—C12—C13—C80.5 (2)
C2—C1—C6—C7−176.27 (15)C11—C12—C13—C14179.27 (15)
C14—C1—C6—C5−179.86 (15)C8—C13—C14—C16.3 (2)
C14—C1—C6—C71.8 (2)C8—C13—C14—C15−173.06 (13)
C2—C1—C14—C13171.60 (14)C12—C13—C14—C1−172.43 (14)
C2—C1—C14—C15−9.1 (2)C12—C13—C14—C158.3 (2)
C6—C1—C14—C13−6.3 (2)C1—C14—C15—N1−4.8 (2)
C6—C1—C14—C15172.94 (14)C13—C14—C15—N1174.48 (14)
C1—C2—C3—C4−1.5 (3)O1—C16—C17—C18−0.49 (19)
C2—C3—C4—C51.3 (3)O1—C16—C17—C20−179.47 (17)
C3—C4—C5—C60.6 (3)N1—C16—C17—C18179.11 (17)
C4—C5—C6—C1−2.3 (3)N1—C16—C17—C200.1 (3)
C4—C5—C6—C7176.03 (17)C16—C17—C18—N20.4 (2)
C1—C6—C7—C83.0 (2)C16—C17—C18—C19−179.36 (18)
C5—C6—C7—C8−175.34 (16)C20—C17—C18—N2179.32 (18)
C6—C7—C8—C9175.57 (15)C20—C17—C18—C19−0.4 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2···N10.932.202.840 (2)125
C15—H15···O10.932.382.7463 (18)103
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯N10.932.202.840 (2)125
  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antibacterial, antifungal and anti-HIV evaluation of Schiff and Mannich bases of isatin derivatives with 3-amino-2-methylmercapto quinazolin-4(3H)-one.

Authors:  S N Pandeya; D Sriram; G Nath; E De Clercq
Journal:  Pharm Acta Helv       Date:  1999-12

3.  Antitumor activity of some diorganotin and tin(IV) complexes of Schiff bases.

Authors:  A Saxena; J P Tandon
Journal:  Cancer Lett       Date:  1983-05       Impact factor: 8.679

4.  4-[(Anthracen-9-yl-methyl-idene)amino]-1,5-dimethyl-2-phenyl-1H-pyrazol-3(2H)-one.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30

5.  N-[(E)-1,3-Benzodioxol-5-yl-methyl-idene]-3,4-dimethyl-1,2-oxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11

6.  Synthesis and anti-bacterial activities of some novel Schiff bases derived from aminophenazone.

Authors:  Abdullah M Asiri; Salman A Khan
Journal:  Molecules       Date:  2010-10-08       Impact factor: 4.411

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  1 in total

1.  Antioxidant, antimicrobial, and theoretical studies of the thiosemicarbazone derivative Schiff base 2-(2-imino-1-methylimidazolidin-4-ylidene)hydrazinecarbothioamide (IMHC).

Authors:  Ahmed A Al-Amiery; Yasmien K Al-Majedy; Heba H Ibrahim; Ali A Al-Tamimi
Journal:  Org Med Chem Lett       Date:  2012-02-02
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.