Literature DB >> 22058939

N-[(E)-1,3-Benzodioxol-5-yl-methyl-idene]-3,4-dimethyl-1,2-oxazol-5-amine.

Abdullah M Asiri, Salman A Khan, M Nawaz Tahir.   

Abstract

In the title compound, C(13)H(12)N(2)O(3), the dihedral angle between the aromatic rings is 7.94 (12)°. In the crystal, inversion dimers linked by pairs of C-H⋯O hydrogen bonds generate R(2) (2)(6) loops. Weak π-π [centroid-centroid separations = 3.7480 (13) and 3.9047 (13) Å] and C-H⋯π inter-actions help to consolidate the packing.

Entities:  

Year:  2011        PMID: 22058939      PMCID: PMC3200615          DOI: 10.1107/S1600536811030327

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to conjugated azo-methanes, see: Asiri & Khan (2010 ▶). For related structures, see: Asiri et al. (2010 ▶); Tahir et al. (2010 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H12N2O3 M = 244.25 Monoclinic, a = 7.5759 (5) Å b = 10.6980 (9) Å c = 14.6307 (12) Å β = 102.607 (2)° V = 1157.19 (16) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.28 × 0.24 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.975, T max = 0.980 8018 measured reflections 2087 independent reflections 1447 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.132 S = 1.03 2087 reflections 165 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030327/hb6330sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030327/hb6330Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030327/hb6330Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N2O3F(000) = 512
Mr = 244.25Dx = 1.402 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1447 reflections
a = 7.5759 (5) Åθ = 3.4–25.3°
b = 10.6980 (9) ŵ = 0.10 mm1
c = 14.6307 (12) ÅT = 296 K
β = 102.607 (2)°Prism, yellow
V = 1157.19 (16) Å30.28 × 0.24 × 0.22 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2087 independent reflections
Radiation source: fine-focus sealed tube1447 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 3.4°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→12
Tmin = 0.975, Tmax = 0.980l = −17→17
8018 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0693P)2 + 0.1704P] where P = (Fo2 + 2Fc2)/3
2087 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6073 (2)0.09898 (13)0.08565 (10)0.0729 (6)
O20.6345 (2)0.27941 (14)0.00426 (10)0.0702 (6)
O30.6207 (2)0.38037 (12)0.55753 (10)0.0699 (6)
N10.6338 (2)0.23824 (15)0.43533 (11)0.0487 (5)
N20.6192 (3)0.37712 (18)0.65383 (13)0.0742 (8)
C10.6183 (2)0.31798 (17)0.28025 (13)0.0457 (6)
C20.6088 (3)0.20099 (17)0.23618 (13)0.0493 (6)
C30.6150 (3)0.19982 (17)0.14411 (14)0.0490 (7)
C40.6313 (3)0.30805 (19)0.09481 (13)0.0510 (7)
C50.6386 (3)0.42247 (19)0.13520 (15)0.0618 (8)
C60.6302 (3)0.42546 (18)0.22912 (14)0.0572 (7)
C70.6271 (3)0.1475 (2)−0.00210 (15)0.0687 (8)
C80.6190 (2)0.33074 (18)0.37881 (13)0.0497 (7)
C90.6331 (3)0.26031 (18)0.52782 (13)0.0478 (7)
C100.6405 (2)0.18039 (18)0.60027 (13)0.0477 (7)
C110.6292 (3)0.2593 (2)0.67649 (14)0.0556 (7)
C120.6270 (3)0.2203 (2)0.77363 (15)0.0716 (9)
C130.6585 (3)0.0425 (2)0.60257 (15)0.0697 (9)
H20.598730.127470.268570.0591*
H50.648650.495150.101830.0741*
H60.632640.502540.258770.0686*
H7A0.737210.11561−0.017170.0824*
H7B0.525550.12203−0.051180.0824*
H80.608110.410480.402290.0596*
H12A0.512850.182130.774710.1074*
H12B0.644200.292270.813830.1074*
H12C0.722680.161450.795180.1074*
H13A0.694850.014470.547090.1045*
H13B0.544430.005360.605310.1045*
H13C0.748010.018160.656790.1045*
U11U22U33U12U13U23
O10.1287 (13)0.0486 (9)0.0459 (9)−0.0125 (8)0.0292 (9)−0.0072 (7)
O20.1149 (12)0.0587 (10)0.0411 (8)−0.0105 (8)0.0259 (8)−0.0007 (7)
O30.1182 (12)0.0479 (9)0.0477 (9)0.0126 (8)0.0273 (8)−0.0003 (7)
N10.0606 (10)0.0462 (9)0.0407 (9)−0.0010 (7)0.0143 (7)0.0013 (7)
N20.1179 (16)0.0650 (13)0.0447 (11)0.0151 (10)0.0288 (10)−0.0032 (9)
C10.0549 (11)0.0427 (10)0.0424 (10)0.0009 (8)0.0170 (8)0.0031 (8)
C20.0648 (12)0.0409 (10)0.0445 (11)−0.0023 (9)0.0172 (9)0.0050 (9)
C30.0631 (12)0.0423 (11)0.0432 (11)−0.0035 (9)0.0148 (9)−0.0020 (9)
C40.0652 (12)0.0526 (12)0.0373 (10)−0.0033 (9)0.0157 (9)0.0023 (9)
C50.0975 (16)0.0443 (12)0.0495 (12)−0.0033 (10)0.0291 (11)0.0083 (9)
C60.0860 (15)0.0407 (11)0.0497 (12)−0.0020 (10)0.0253 (10)−0.0009 (9)
C70.1030 (17)0.0597 (14)0.0456 (12)−0.0082 (12)0.0210 (11)−0.0036 (10)
C80.0656 (13)0.0431 (10)0.0434 (11)−0.0004 (9)0.0186 (9)−0.0022 (9)
C90.0591 (12)0.0446 (11)0.0410 (11)0.0003 (8)0.0140 (9)−0.0023 (9)
C100.0517 (11)0.0505 (12)0.0404 (11)−0.0020 (8)0.0091 (8)0.0009 (9)
C110.0582 (12)0.0666 (14)0.0426 (12)0.0025 (10)0.0122 (9)0.0005 (10)
C120.0825 (16)0.0934 (18)0.0410 (12)−0.0012 (13)0.0179 (11)0.0039 (12)
C130.0987 (17)0.0543 (13)0.0523 (14)−0.0088 (11)0.0083 (12)0.0070 (10)
O1—C31.370 (2)C9—C101.353 (3)
O1—C71.423 (3)C10—C111.416 (3)
O2—C41.365 (2)C10—C131.481 (3)
O2—C71.415 (3)C11—C121.485 (3)
O3—N21.412 (2)C2—H20.9300
O3—C91.366 (2)C5—H50.9300
N1—C81.279 (2)C6—H60.9300
N1—C91.375 (2)C7—H7A0.9700
N2—C111.301 (3)C7—H7B0.9700
C1—C21.403 (3)C8—H80.9300
C1—C61.385 (3)C12—H12A0.9600
C1—C81.447 (3)C12—H12B0.9600
C2—C31.358 (3)C12—H12C0.9600
C3—C41.384 (3)C13—H13A0.9600
C4—C51.355 (3)C13—H13B0.9600
C5—C61.390 (3)C13—H13C0.9600
C3—O1—C7106.12 (15)C10—C11—C12126.98 (19)
C4—O2—C7106.20 (16)C1—C2—H2121.00
N2—O3—C9108.09 (14)C3—C2—H2121.00
C8—N1—C9119.01 (17)C4—C5—H5122.00
O3—N2—C11105.39 (17)C6—C5—H5122.00
C2—C1—C6119.69 (17)C1—C6—H6119.00
C2—C1—C8122.06 (17)C5—C6—H6119.00
C6—C1—C8118.24 (17)O1—C7—H7A110.00
C1—C2—C3117.05 (17)O1—C7—H7B110.00
O1—C3—C2128.35 (17)O2—C7—H7A110.00
O1—C3—C4109.26 (17)O2—C7—H7B110.00
C2—C3—C4122.39 (18)H7A—C7—H7B108.00
O2—C4—C3109.91 (17)N1—C8—H8118.00
O2—C4—C5128.19 (19)C1—C8—H8118.00
C3—C4—C5121.89 (18)C11—C12—H12A109.00
C4—C5—C6116.46 (19)C11—C12—H12B109.00
C1—C6—C5122.49 (18)C11—C12—H12C109.00
O1—C7—O2108.37 (16)H12A—C12—H12B109.00
N1—C8—C1123.51 (17)H12A—C12—H12C110.00
O3—C9—N1119.35 (16)H12B—C12—H12C109.00
O3—C9—C10109.80 (16)C10—C13—H13A109.00
N1—C9—C10130.84 (18)C10—C13—H13B110.00
C9—C10—C11103.94 (17)C10—C13—H13C109.00
C9—C10—C13129.41 (18)H13A—C13—H13B109.00
C11—C10—C13126.65 (18)H13A—C13—H13C109.00
N2—C11—C10112.77 (18)H13B—C13—H13C109.00
N2—C11—C12120.26 (19)
C7—O1—C3—C2−177.5 (2)C6—C1—C8—N1−170.00 (18)
C7—O1—C3—C42.4 (2)C1—C2—C3—O1−179.6 (2)
C3—O1—C7—O2−3.8 (2)C1—C2—C3—C40.5 (3)
C7—O2—C4—C3−2.4 (2)O1—C3—C4—O20.0 (3)
C7—O2—C4—C5178.9 (2)O1—C3—C4—C5178.8 (2)
C4—O2—C7—O13.8 (2)C2—C3—C4—O2179.9 (2)
C9—O3—N2—C11−0.4 (2)C2—C3—C4—C5−1.3 (4)
N2—O3—C9—N1178.87 (19)O2—C4—C5—C6179.1 (2)
N2—O3—C9—C10−0.3 (2)C3—C4—C5—C60.5 (3)
C9—N1—C8—C1179.97 (18)C4—C5—C6—C11.1 (3)
C8—N1—C9—O3−1.4 (3)O3—C9—C10—C110.8 (2)
C8—N1—C9—C10177.5 (2)O3—C9—C10—C13−178.49 (18)
O3—N2—C11—C100.9 (3)N1—C9—C10—C11−178.2 (2)
O3—N2—C11—C12−178.74 (19)N1—C9—C10—C132.5 (4)
C6—C1—C2—C31.1 (3)C9—C10—C11—N2−1.1 (3)
C8—C1—C2—C3−177.91 (18)C9—C10—C11—C12178.5 (2)
C2—C1—C6—C5−2.0 (3)C13—C10—C11—N2178.2 (2)
C8—C1—C6—C5177.09 (19)C13—C10—C11—C12−2.2 (3)
C2—C1—C8—N19.0 (3)
Cg1 is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
C7—H7B···O1i0.972.583.264 (3)128
C12—H12A···Cg1ii0.962.953.763 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7B⋯O1i0.972.583.264 (3)128
C12—H12ACg1ii0.962.953.763 (2)143

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-benzyl-idene)-3,4-dimethyl-isoxazol-5-amine.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

3.  N-[(E)-1,3-Benzodioxol-5-yl-methyl-idene]-4-methyl-aniline.

Authors:  M Nawaz Tahir; Hazoor Ahmad Shad; Muhammad Naeem Khan; Riaz H Tariq
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24

4.  Synthesis and anti-bacterial activities of some novel Schiff bases derived from aminophenazone.

Authors:  Abdullah M Asiri; Salman A Khan
Journal:  Molecules       Date:  2010-10-08       Impact factor: 4.411

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  N-[(E)-Anthracen-9-yl-methyl-idene]-3,4-dimethyl-1,2-oxazol-5-amine.

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30
  1 in total

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