Literature DB >> 22199942

N,N',N''-Tricyclo-hexyl-guanidinium iodide.

Farouq F Said, Basem F Ali, Darrin Richeson.   

Abstract

In the title compound, C(19)H(36)N(3) (+)·I(-), the orientation of the cyclo-hexyl rings around the planar (sum of N-C-N angles = 360°) CN(3) (+) unit produces steric hindrance around the N-H groups. As a consequence of this particular orientation of the tricyclo-hexyl-guanidinium cation (hereafter denoted CHGH(+)), hydrogen bonding is restricted to classical N-H⋯I and non-clasical (cyclo-hex-yl)C-H⋯I hydrogen bonds. The propeller CHGH(+) cation and the oriented hydrogen-bonding interactions lead to a three-dimensional supra-molecular structure.

Entities:  

Year:  2011        PMID: 22199942      PMCID: PMC3239094          DOI: 10.1107/S1600536811049683

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to guanidines, see: Ishikawa & Isobe (2002 ▶); Moroni et al. (2001 ▶); Yoshiizumi et al. (1998 ▶). The title salt is isomorphous with the chloride anion-analogue (Cai & Hu, 2006 ▶) and N,N′,N′′-triisopropyl­guanidinium chloride (Said et al., 2005 ▶). (Ishikawa & Isobe, 2002 ▶). The structural features and hydrogen -bonding array provided by guanidinium cations suggest them to be good building blocks for the formation of supra­molecular entities, see: Said, Bazinet et al. (2006 ▶); Said, Ong et al. (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H36N3 +·I− M = 433.41 Cubic, a = 12.893 (4) Å V = 2143 (2) Å3 Z = 4 Mo Kα radiation μ = 1.50 mm−1 T = 188 K 0.5 × 0.3 × 0.3 mm

Data collection

Bruker P4 diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.271, T max = 0.320 2387 measured reflections 802 independent reflections 628 reflections with I > 2σ(I) R int = 0.055 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.076 S = 1.04 802 reflections 70 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 802 Friedel pairs Flack parameter: 0.08 (8) Data collection: XSCANS (Bruker, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811049683/bq2321sup1.cif Supplementary material file. DOI: 10.1107/S1600536811049683/bq2321Isup2.mol Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049683/bq2321Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811049683/bq2321Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H36N3+·IDx = 1.343 Mg m3
Mr = 433.41Mo Kα radiation, λ = 0.71073 Å
Cubic, P213Cell parameters from 30 reflections
Hall symbol: P 2ac 2ab 3θ = 3.9–6.9°
a = 12.893 (4) ŵ = 1.50 mm1
V = 2143 (2) Å3T = 188 K
Z = 4Block, colorless
F(000) = 8960.5 × 0.3 × 0.3 mm
Bruker P4 diffractometer628 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.055
graphiteθmax = 25.9°, θmin = 2.2°
ω scansh = 0→15
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = 0→15
Tmin = 0.271, Tmax = 0.320l = 0→15
2387 measured reflections3 standard reflections every 97 reflections
802 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0269P)2 + 0.7683P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
802 reflectionsΔρmax = 0.33 e Å3
70 parametersΔρmin = −0.27 e Å3
0 restraintsAbsolute structure: Flack (1983), 802 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.08 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.89107 (4)0.89107 (4)0.89107 (4)0.0589 (2)
N10.8894 (5)0.1398 (4)0.7489 (4)0.0715 (16)
H1A0.88030.07810.77280.086*
C10.8343 (6)0.1657 (6)0.6657 (6)0.064 (3)
C20.9631 (6)0.2045 (6)0.8033 (6)0.071 (2)
H2A0.98120.26360.75910.086*
C30.9164 (6)0.2440 (8)0.9017 (8)0.114 (4)
H3A0.89510.18610.94480.137*
H3B0.85560.28550.88620.137*
C40.9957 (9)0.3091 (9)0.9588 (11)0.149 (5)
H4A1.01150.37010.91770.179*
H4B0.96600.33231.02390.179*
C51.0919 (7)0.2525 (9)0.9799 (7)0.100 (3)
H5A1.07800.19671.02850.120*
H5B1.14190.29901.01160.120*
C61.1359 (5)0.2091 (7)0.8838 (7)0.084 (2)
H6A1.19570.16680.90090.101*
H6C1.15930.26540.83970.101*
C71.0581 (6)0.1441 (7)0.8255 (7)0.086 (3)
H7C1.08850.12060.76080.103*
H7A1.04040.08350.86630.103*
U11U22U33U12U13U23
I10.0589 (2)0.0589 (2)0.0589 (2)−0.0007 (3)−0.0007 (3)−0.0007 (3)
N10.084 (4)0.060 (3)0.070 (4)−0.014 (4)−0.026 (4)0.014 (3)
C10.064 (3)0.064 (3)0.064 (3)−0.012 (4)−0.012 (4)0.012 (4)
C20.082 (6)0.071 (5)0.061 (5)−0.020 (5)−0.024 (4)0.010 (4)
C30.082 (7)0.132 (8)0.129 (9)0.040 (6)−0.022 (7)−0.045 (8)
C40.129 (9)0.147 (10)0.172 (12)0.014 (9)−0.035 (9)−0.102 (10)
C50.097 (7)0.138 (8)0.065 (5)−0.021 (8)−0.028 (6)0.008 (6)
C60.064 (5)0.090 (6)0.098 (6)−0.014 (4)−0.005 (5)0.007 (6)
C70.049 (4)0.104 (7)0.105 (6)−0.010 (4)−0.001 (5)−0.026 (6)
N1—C11.330 (5)C4—C51.465 (13)
N1—C21.446 (9)C4—H4A0.9700
N1—H1A0.8600C4—H4B0.9700
C1—N1i1.330 (5)C5—C61.473 (13)
C1—N1ii1.330 (5)C5—H5A0.9700
C2—C71.479 (10)C5—H5B0.9700
C2—C31.493 (11)C6—C71.508 (10)
C2—H2A0.9800C6—H6A0.9700
C3—C41.514 (13)C6—H6C0.9700
C3—H3A0.9700C7—H7C0.9700
C3—H3B0.9700C7—H7A0.9700
C1—N1—C2126.7 (5)C5—C4—H4B109.1
C1—N1—H1A116.7C3—C4—H4B109.1
C2—N1—H1A116.7H4A—C4—H4B107.8
N1i—C1—N1119.99 (3)C4—C5—C6111.1 (8)
N1i—C1—N1ii119.99 (3)C4—C5—H5A109.4
N1—C1—N1ii119.99 (3)C6—C5—H5A109.4
N1—C2—C7109.5 (6)C4—C5—H5B109.4
N1—C2—C3110.1 (7)C6—C5—H5B109.4
C7—C2—C3110.4 (7)H5A—C5—H5B108.0
N1—C2—H2A108.9C5—C6—C7112.0 (7)
C7—C2—H2A108.9C5—C6—H6A109.2
C3—C2—H2A108.9C7—C6—H6A109.2
C2—C3—C4109.3 (8)C5—C6—H6C109.2
C2—C3—H3A109.8C7—C6—H6C109.2
C4—C3—H3A109.8H6A—C6—H6C107.9
C2—C3—H3B109.8C2—C7—C6110.8 (7)
C4—C3—H3B109.8C2—C7—H7C109.5
H3A—C3—H3B108.3C6—C7—H7C109.5
C5—C4—C3112.7 (8)C2—C7—H7A109.5
C5—C4—H4A109.1C6—C7—H7A109.5
C3—C4—H4A109.1H7C—C7—H7A108.1
D—H···AD—HH···AD···AD—H···A
N1—H1A···I1iii0.862.863.693 (5)165
C2—H2A···I1iv0.983.033.950 (5)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯I1i0.862.863.693 (5)165
C2—H2A⋯I1ii0.983.033.950 (5)158

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Modified guanidines as chiral auxiliaries.

Authors:  Tsutomu Ishikawa; Toshio Isobe
Journal:  Chemistry       Date:  2002-02-02       Impact factor: 5.236

2.  First synthesis of totally orthogonal protected alpha-(trifluoromethyl)- and alpha-(difluoromethyl)arginines.

Authors:  M Moroni; B Koksch; S N Osipov; M Crucianelli; M Frigerio; P Bravo; K Burger
Journal:  J Org Chem       Date:  2001-01-12       Impact factor: 4.354

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Biologically selective potassium channel openers having 1,1-diethylpropyl group.

Authors:  K Yoshiizumi; N Seko; N Nishimura; S Ikeda; K Yoshino; H Kondo; K Tanizawa
Journal:  Bioorg Med Chem Lett       Date:  1998-12-01       Impact factor: 2.823

  4 in total
  1 in total

1.  Bis(N,N',N''-triisopropyl-guanidinium) fumarate-fumaric acid (1/1).

Authors:  Farouq F Said; Basem F Ali; Darrin Richeson; Ilia Korobkov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.