Literature DB >> 22719661

Bis(N,N',N''-triisopropyl-guanidinium) fumarate-fumaric acid (1/1).

Farouq F Said, Basem F Ali, Darrin Richeson, Ilia Korobkov.   

Abstract

The asymmetric unit of the title compound, C(10)H(24)N(3) (+)·0.5C(4)H(2)O(4) (2-)·0.5C(4)H(4)O(4), comprises a triisopropyl-guanidinium cation, half of a fumarate dianion and half of a fumaric acid mol-ecule; both the fumarate dianion and the fumaric acid mol-ecule are located on inversion centres. In the crystal, inter-molecular O-H⋯O hydrogen bonds between the carboxyl groups of the fumaric acid mol-ecules and the carboxyl-ate groups of the fumarate anions lead to the formation of a hydrogen-bonded supra-molecular twisted chain along the b axis. The triisopropyl-guanidinium cations inter-act with the fumarate-fumaric acid chains via extensive N-H⋯O and C-H⋯O hydrogen bonds, leading to a ladder arrangement, with the cation being the rungs that bridge three curled chains of fumarate-fumaric acid. The crystal packing is stabilized by N-H⋯O and C-H⋯O (cation⋯fumarate/fumaric) and O-H⋯O (fumarate⋯fumaric) hydrogen bonds, consolidating a three-dimensional network.

Entities:  

Year:  2012        PMID: 22719661      PMCID: PMC3379463          DOI: 10.1107/S1600536812023094

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and N,N′,N"-tris­ubstituted guanidinium salts, see: Said et al. (2011 ▶). For related structures, see: Said et al. (2005 ▶); Hemamalini & Fun (2010 ▶); Büyükgüngör et al. (2004 ▶). For the preparation of the triisopropyl guanidine compound, see: Ong et al. (2003 ▶).

Experimental

Crystal data

C10H24N3 +·0.5C4H2O4 2−·0.5C4H4O4 M = 301.39 Monoclinic, a = 9.714 (3) Å b = 11.633 (3) Å c = 16.226 (4) Å β = 102.291 (4)° V = 1791.6 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 200 K 0.50 × 0.45 × 0.45 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▶) T min = 0.960, T max = 0.964 11184 measured reflections 2514 independent reflections 2121 reflections with I > 2σ(I) R int = 0.027 θmax = 23.3°

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.130 S = 1.04 2514 reflections 191 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812023094/pv2540sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023094/pv2540Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H24N3+·0.5C4H2O42·0.5C4H4O4F(000) = 656
Mr = 301.39Dx = 1.117 Mg m3Dm = n/a Mg m3Dm measured by not measured
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 309 reflections
a = 9.714 (3) Åθ = 2.2–23.3°
b = 11.633 (3) ŵ = 0.08 mm1
c = 16.226 (4) ÅT = 200 K
β = 102.291 (4)°Block, colourless
V = 1791.6 (8) Å30.50 × 0.45 × 0.45 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2514 independent reflections
Radiation source: fine-focus sealed tube2121 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
phi and ω scansθmax = 23.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −10→10
Tmin = 0.960, Tmax = 0.964k = −12→12
11184 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0727P)2 + 0.7515P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2514 reflectionsΔρmax = 0.22 e Å3
191 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.013 (2)
Experimental. Data collection is performed with three batch runs at phi = 0.00 ° (650 frames), at phi = 120.00 ° (650 frames), and at phi = 240.00 ° (650 frames). Frame width = 0.30 ° in omega. Data is merged, corrected for decay (if any), and treated with multi-scan absorption corrections (if required). All symmetry-equivalent reflections are merged for centrosymmetric data. Friedel pairs are not merged for noncentrosymmetric data.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3813 (2)0.7589 (2)0.65518 (12)0.0606 (6)
H1A0.34960.72060.60820.073*
N20.55340 (17)0.87868 (16)0.72883 (10)0.0407 (5)
H2A0.51340.86980.77220.049*
N30.55035 (18)0.83370 (15)0.58961 (10)0.0400 (5)
H3A0.62210.88090.59300.048*
C10.4961 (2)0.82257 (18)0.65809 (12)0.0372 (5)
C20.3022 (3)0.7462 (3)0.72241 (15)0.0618 (8)
H2B0.35310.78790.77380.074*
C30.1559 (4)0.7963 (3)0.6947 (2)0.0908 (10)
H3B0.16300.87800.68130.136*
H3C0.10470.78800.74020.136*
H3D0.10530.75540.64450.136*
C40.2946 (4)0.6209 (3)0.7427 (2)0.0980 (12)
H4A0.39020.59030.76140.147*
H4B0.24630.57940.69220.147*
H4C0.24240.61110.78760.147*
C50.6772 (2)0.95385 (17)0.74056 (13)0.0377 (5)
H5A0.68410.98530.68420.045*
C60.6565 (3)1.0533 (2)0.79649 (16)0.0575 (7)
H6A0.56961.09420.77120.086*
H6B0.73671.10610.80230.086*
H6C0.65001.02430.85220.086*
C70.8100 (3)0.8884 (2)0.77559 (19)0.0652 (7)
H7A0.81990.82510.73740.098*
H7B0.80560.85740.83110.098*
H7C0.89110.94010.78110.098*
C80.5007 (2)0.77405 (19)0.50895 (13)0.0438 (6)
H8A0.39560.76970.49800.053*
C90.5406 (3)0.8431 (2)0.43942 (14)0.0555 (6)
H9A0.50030.92040.43870.083*
H9B0.50410.80540.38520.083*
H9C0.64340.84860.44900.083*
C100.5571 (4)0.6538 (2)0.51258 (18)0.0841 (10)
H10A0.52880.61200.55870.126*
H10B0.66020.65610.52230.126*
H10C0.51930.61470.45910.126*
C110.8673 (2)0.02478 (18)0.57016 (13)0.0372 (5)
C120.9785 (2)0.04210 (18)0.52111 (13)0.0366 (5)
H12A1.01960.11610.52020.044*
C130.0836 (2)0.63781 (18)0.46512 (12)0.0373 (5)
C14−0.0139 (2)0.54111 (18)0.47181 (12)0.0388 (5)
H14A−0.10180.53880.43270.047*
O10.81517 (17)−0.06979 (13)0.57428 (11)0.0534 (5)
O20.82763 (15)0.11397 (12)0.60762 (10)0.0468 (4)
H20.87410.17180.59860.070*
O30.19305 (19)0.64871 (16)0.51791 (11)0.0672 (6)
O40.04379 (15)0.70345 (12)0.40121 (9)0.0425 (4)
U11U22U33U12U13U23
N10.0536 (12)0.0929 (16)0.0369 (10)−0.0418 (11)0.0131 (9)−0.0110 (10)
N20.0404 (10)0.0532 (11)0.0306 (9)−0.0154 (8)0.0123 (7)−0.0032 (8)
N30.0414 (10)0.0462 (10)0.0337 (9)−0.0158 (8)0.0111 (7)−0.0042 (8)
C10.0352 (11)0.0435 (12)0.0321 (11)−0.0100 (9)0.0058 (9)0.0015 (9)
C20.0527 (14)0.094 (2)0.0402 (13)−0.0384 (14)0.0138 (11)−0.0032 (13)
C30.093 (2)0.087 (2)0.106 (3)0.0130 (18)0.051 (2)0.0107 (19)
C40.091 (2)0.116 (3)0.098 (2)0.018 (2)0.0448 (19)0.059 (2)
C50.0373 (11)0.0419 (12)0.0344 (11)−0.0107 (9)0.0085 (9)−0.0029 (9)
C60.0753 (17)0.0488 (15)0.0524 (14)−0.0164 (12)0.0227 (13)−0.0100 (11)
C70.0413 (13)0.0687 (17)0.0832 (19)−0.0008 (12)0.0076 (13)0.0107 (14)
C80.0505 (13)0.0483 (13)0.0303 (11)−0.0115 (10)0.0035 (9)−0.0018 (9)
C90.0729 (16)0.0591 (15)0.0346 (12)−0.0105 (12)0.0115 (11)−0.0006 (11)
C100.143 (3)0.0518 (17)0.0493 (16)0.0038 (17)0.0019 (17)−0.0053 (12)
C110.0385 (11)0.0384 (12)0.0380 (11)−0.0092 (9)0.0154 (9)−0.0038 (9)
C120.0381 (11)0.0344 (11)0.0404 (11)−0.0115 (8)0.0152 (9)−0.0012 (8)
C130.0428 (12)0.0405 (12)0.0291 (11)−0.0111 (9)0.0089 (9)−0.0064 (9)
C140.0378 (11)0.0453 (12)0.0313 (10)−0.0120 (9)0.0028 (9)−0.0033 (8)
O10.0598 (10)0.0442 (9)0.0669 (11)−0.0215 (8)0.0376 (8)−0.0112 (8)
O20.0534 (9)0.0382 (8)0.0578 (9)−0.0073 (7)0.0316 (8)−0.0029 (7)
O30.0652 (11)0.0750 (12)0.0514 (10)−0.0411 (9)−0.0100 (9)0.0121 (9)
O40.0539 (9)0.0377 (8)0.0366 (8)−0.0069 (7)0.0111 (7)0.0000 (6)
N1—C11.331 (3)C7—H7A0.9800
N1—C21.469 (3)C7—H7B0.9800
N1—H1A0.8800C7—H7C0.9800
N2—C11.335 (3)C8—C101.499 (4)
N2—C51.466 (3)C8—C91.502 (3)
N2—H2A0.8800C8—H8A1.0000
N3—C11.334 (3)C9—H9A0.9800
N3—C81.469 (3)C9—H9B0.9800
N3—H3A0.8800C9—H9C0.9800
C2—C41.500 (5)C10—H10A0.9800
C2—C31.513 (4)C10—H10B0.9800
C2—H2B1.0000C10—H10C0.9800
C3—H3B0.9800C11—O11.219 (2)
C3—H3C0.9800C11—O21.302 (3)
C3—H3D0.9800C11—C121.485 (3)
C4—H4A0.9800C12—C12i1.314 (4)
C4—H4B0.9800C12—H12A0.9500
C4—H4C0.9800C13—O31.222 (3)
C5—C71.501 (3)C13—O41.279 (3)
C5—C61.510 (3)C13—C141.489 (3)
C5—H5A1.0000C14—C14ii1.311 (4)
C6—H6A0.9800C14—H14A0.9500
C6—H6B0.9800O2—H20.8400
C6—H6C0.9800
C1—N1—C2126.59 (19)H6A—C6—H6C109.5
C1—N1—H1A116.7H6B—C6—H6C109.5
C2—N1—H1A116.7C5—C7—H7A109.5
C1—N2—C5125.70 (16)C5—C7—H7B109.5
C1—N2—H2A117.1H7A—C7—H7B109.5
C5—N2—H2A117.1C5—C7—H7C109.5
C1—N3—C8125.69 (17)H7A—C7—H7C109.5
C1—N3—H3A117.2H7B—C7—H7C109.5
C8—N3—H3A117.2N3—C8—C10110.97 (19)
N1—C1—N2119.70 (18)N3—C8—C9109.17 (18)
N1—C1—N3120.07 (18)C10—C8—C9112.2 (2)
N2—C1—N3120.18 (17)N3—C8—H8A108.1
N1—C2—C4108.6 (2)C10—C8—H8A108.1
N1—C2—C3110.3 (2)C9—C8—H8A108.1
C4—C2—C3110.6 (2)C8—C9—H9A109.5
N1—C2—H2B109.1C8—C9—H9B109.5
C4—C2—H2B109.1H9A—C9—H9B109.5
C3—C2—H2B109.1C8—C9—H9C109.5
C2—C3—H3B109.5H9A—C9—H9C109.5
C2—C3—H3C109.5H9B—C9—H9C109.5
H3B—C3—H3C109.5C8—C10—H10A109.5
C2—C3—H3D109.5C8—C10—H10B109.5
H3B—C3—H3D109.5H10A—C10—H10B109.5
H3C—C3—H3D109.5C8—C10—H10C109.5
C2—C4—H4A109.5H10A—C10—H10C109.5
C2—C4—H4B109.5H10B—C10—H10C109.5
H4A—C4—H4B109.5O1—C11—O2121.74 (18)
C2—C4—H4C109.5O1—C11—C12120.65 (18)
H4A—C4—H4C109.5O2—C11—C12117.61 (17)
H4B—C4—H4C109.5C12i—C12—C11121.8 (2)
N2—C5—C7111.20 (19)C12i—C12—H12A119.1
N2—C5—C6108.94 (17)C11—C12—H12A119.1
C7—C5—C6112.0 (2)O3—C13—O4125.02 (19)
N2—C5—H5A108.2O3—C13—C14119.94 (19)
C7—C5—H5A108.2O4—C13—C14115.03 (18)
C6—C5—H5A108.2C14ii—C14—C13124.2 (2)
C5—C6—H6A109.5C14ii—C14—H14A117.9
C5—C6—H6B109.5C13—C14—H14A117.9
H6A—C6—H6B109.5C11—O2—H2109.5
C5—C6—H6C109.5
C2—N1—C1—N23.1 (4)C1—N2—C5—C7−92.6 (3)
C2—N1—C1—N3−174.4 (2)C1—N2—C5—C6143.5 (2)
C5—N2—C1—N1−178.4 (2)C1—N3—C8—C10−80.4 (3)
C5—N2—C1—N3−1.0 (3)C1—N3—C8—C9155.4 (2)
C8—N3—C1—N1−4.8 (3)O1—C11—C12—C12i1.9 (4)
C8—N3—C1—N2177.8 (2)O2—C11—C12—C12i−177.6 (3)
C1—N1—C2—C4−123.8 (3)O3—C13—C14—C14ii−5.4 (4)
C1—N1—C2—C3114.8 (3)O4—C13—C14—C14ii173.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.882.052.866 (2)154
N2—H2A···O4iii0.882.222.976 (2)144
N3—H3A···O1iv0.882.042.866 (2)155
O2—H2···O4v0.841.662.484 (2)168
C8—H8A···O31.002.493.356 (2)144
C2—H2B···O4iii1.002.463.372 (2)150
C5—H5A···O1iv1.002.483.270 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.882.052.866 (2)154
N2—H2A⋯O4i0.882.222.976 (2)144
N3—H3A⋯O1ii0.882.042.866 (2)155
O2—H2⋯O4iii0.841.662.484 (2)168
C8—H8A⋯O31.002.493.356 (2)144
C2—H2B⋯O4i1.002.463.372 (2)150
C5—H5A⋯O1ii1.002.483.270 (2)135

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Catalytic construction and reconstruction of guanidines: Ti-mediated guanylation of amines and transamination of guanidines.

Authors:  Tiow-Gan Ong; Glenn P A Yap; Darrin S Richeson
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

3.  2-Aminopyridinium-fumarate-fumaric acid (2/1/1).

Authors:  Orhan Büyükgüngör; Mustafa Odabaşoğlu; Ciğdem Albayrak; Peter Lönnecke
Journal:  Acta Crystallogr C       Date:  2004-06-12       Impact factor: 1.172

4.  Bis-(2-amino-5-methyl-pyridinium) fumarate-fumaric acid (1/1).

Authors:  Madhukar Hemamalini; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24

5.  N,N',N''-Tricyclo-hexyl-guanidinium iodide.

Authors:  Farouq F Said; Basem F Ali; Darrin Richeson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30
  5 in total

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