Literature DB >> 21522764

2-Amino-4-methyl-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate methanol monosolvate.

Hossein Aghabozorg, Azadeh Mofidi Rouchi, Masoud Mirzaei, Behrouz Notash.   

Abstract

In the title solvated molecular salt, C(6)n class="Species">H(9)N(2) (+)·C(7)H(4)NO(4) (-)·CH(4)O, the pyridine N atom of 2-amino-4-methyl-pyridine is protonated and one carboxyl group of pyridine-2,6-dicarb-oxy-lic acid is deprotonated. The dihedral angles between the -CO(2) and -COH groups and the pyridine ring are 0.65 (13) and 7.4°. The crystal packing is stabilized by inter-molecular N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21522764      PMCID: PMC3050251          DOI: 10.1107/S1600536810050245

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to proton-transfer compounds, see: Aghabozorg et al. (2008 ▶). For related structures, see: Aakeröy et al. (1998 ▶); Aghabozorg et al. (2006 ▶); Al-Allaf et al. (2003 ▶); Fu et al. (2005 ▶); Linden et al. (2003 ▶); Moghimi et al. (2004 ▶); Sheshmani et al. (2006 ▶); Thanigaimani et al. (2007 ▶).

Experimental

Crystal data

C6H9N2 +·C7H4n class="Chemical">NO4 −·CH4O M = 307.31 Triclinic, a = 7.2191 (14) Å b = 9.5095 (19) Å c = 11.139 (2) Å α = 94.44 (3)° β = 99.76 (3)° γ = 92.50 (3)° V = 750.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.4 × 0.25 × 0.2 mm

Data collection

Stoe IPDS II diffractometer 8658 measured reflections 4005 independent reflections 2697 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.079 wR(F 2) = 0.216 S = 1.17 4005 reflections 222 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.26 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050245/bt5416sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050245/bt5416Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4·CH4OZ = 2
Mr = 307.31F(000) = 324.0
Triclinic, P1Dx = 1.361 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2191 (14) ÅCell parameters from 4005 reflections
b = 9.5095 (19) Åθ = 2.2–29.2°
c = 11.139 (2) ŵ = 0.11 mm1
α = 94.44 (3)°T = 298 K
β = 99.76 (3)°Block, colorless
γ = 92.50 (3)°0.4 × 0.25 × 0.2 mm
V = 750.1 (3) Å3
Stoe IPDS II diffractometer2697 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.058
graphiteθmax = 29.2°, θmin = 2.2°
Detector resolution: 0.15 mm pixels mm-1h = −9→9
rotation method scansk = −12→13
8658 measured reflectionsl = −15→15
4005 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.079H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.216w = 1/[σ2(Fo2) + (0.0939P)2 + 0.144P] where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max < 0.001
4005 reflectionsΔρmax = 0.44 e Å3
222 parametersΔρmin = −0.26 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.07 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0312 (3)−0.1514 (2)0.73074 (19)0.0679 (6)
O20.2937 (3)−0.1669 (2)0.8602 (2)0.0686 (6)
O3−0.3748 (2)0.20309 (19)0.76854 (17)0.0544 (5)
O4−0.2965 (3)0.3911 (2)0.9022 (2)0.0730 (7)
O50.7131 (3)0.9637 (2)0.6320 (2)0.0685 (6)
N1−0.0374 (3)0.09454 (18)0.84467 (16)0.0381 (4)
N20.2829 (3)0.3098 (2)0.70000 (18)0.0424 (5)
N30.3671 (4)0.5125 (3)0.8268 (3)0.0689 (8)
C20.1276 (3)0.0410 (2)0.8845 (2)0.0415 (5)
C30.2618 (4)0.1087 (3)0.9759 (3)0.0567 (7)
H30.37480.06781.00170.068*
C40.2249 (4)0.2381 (3)1.0281 (3)0.0587 (7)
H40.31350.28721.08900.070*
C50.0548 (4)0.2936 (2)0.9886 (2)0.0501 (6)
H50.02640.38061.02290.060*
C6−0.0741 (3)0.2185 (2)0.8971 (2)0.0386 (5)
C10.1592 (4)−0.1007 (3)0.8243 (2)0.0495 (6)
C7−0.2648 (3)0.2756 (2)0.8524 (2)0.0455 (5)
C80.2394 (3)0.4369 (2)0.7460 (2)0.0447 (5)
C90.0583 (3)0.4838 (3)0.7033 (2)0.0509 (6)
H90.02480.57120.73370.061*
C10−0.0679 (3)0.4020 (3)0.6179 (2)0.0478 (6)
C11−0.0140 (4)0.2706 (3)0.5725 (2)0.0545 (6)
H11−0.09720.21360.51380.065*
C120.1599 (4)0.2277 (3)0.6147 (2)0.0515 (6)
H120.19530.14080.58480.062*
C13−0.2608 (4)0.4518 (4)0.5746 (3)0.0691 (8)
H13A−0.34980.40750.61680.104*
H13B−0.29640.42720.48820.104*
H13C−0.25920.55250.59100.104*
C140.5526 (5)0.8734 (4)0.6264 (4)0.0877 (11)
H14A0.58330.77750.60970.132*
H14B0.45560.89790.56250.132*
H14C0.50880.88310.70320.132*
H5A0.700 (6)1.030 (5)0.676 (4)0.097 (14)*
H20.392 (5)0.282 (3)0.727 (3)0.058 (8)*
H1−0.058 (6)−0.094 (4)0.713 (4)0.095 (12)*
H3A0.338 (5)0.595 (4)0.855 (3)0.084 (11)*
H3B0.465 (5)0.479 (4)0.861 (3)0.068 (9)*
U11U22U33U12U13U23
O10.0737 (14)0.0578 (11)0.0673 (13)0.0256 (10)0.0023 (10)−0.0158 (9)
O20.0602 (12)0.0590 (11)0.0874 (14)0.0301 (9)0.0100 (10)0.0034 (10)
O30.0426 (9)0.0509 (9)0.0627 (11)0.0152 (7)−0.0078 (8)−0.0096 (8)
O40.0609 (12)0.0584 (11)0.0882 (15)0.0281 (9)−0.0126 (10)−0.0246 (10)
O50.0592 (12)0.0678 (13)0.0696 (13)0.0078 (10)−0.0027 (10)−0.0227 (10)
N10.0377 (9)0.0360 (9)0.0402 (9)0.0065 (7)0.0046 (7)0.0020 (7)
N20.0400 (10)0.0427 (10)0.0432 (10)0.0103 (8)0.0031 (8)0.0000 (8)
N30.0466 (13)0.0550 (13)0.0925 (19)0.0163 (11)−0.0104 (12)−0.0305 (13)
C20.0390 (11)0.0390 (10)0.0482 (12)0.0102 (8)0.0089 (9)0.0069 (9)
C30.0380 (12)0.0537 (14)0.0738 (17)0.0107 (10)−0.0055 (11)0.0060 (12)
C40.0488 (14)0.0515 (14)0.0654 (16)−0.0006 (11)−0.0137 (12)−0.0053 (12)
C50.0527 (14)0.0368 (11)0.0546 (14)0.0052 (10)−0.0049 (11)−0.0040 (10)
C60.0381 (11)0.0355 (10)0.0408 (11)0.0061 (8)0.0020 (8)0.0031 (8)
C10.0512 (14)0.0451 (12)0.0546 (14)0.0161 (10)0.0137 (11)0.0014 (10)
C70.0418 (12)0.0420 (11)0.0506 (13)0.0132 (9)0.0021 (9)−0.0014 (9)
C80.0387 (11)0.0413 (11)0.0526 (13)0.0072 (9)0.0058 (9)−0.0029 (9)
C90.0421 (12)0.0462 (12)0.0648 (15)0.0127 (10)0.0091 (11)0.0011 (11)
C100.0370 (11)0.0550 (13)0.0519 (13)0.0036 (10)0.0043 (10)0.0136 (10)
C110.0503 (14)0.0585 (15)0.0491 (14)−0.0037 (11)−0.0016 (11)−0.0042 (11)
C120.0538 (14)0.0449 (12)0.0530 (14)0.0051 (10)0.0067 (11)−0.0077 (10)
C130.0419 (14)0.081 (2)0.083 (2)0.0088 (13)−0.0001 (13)0.0215 (16)
C140.078 (2)0.076 (2)0.106 (3)−0.0007 (18)0.012 (2)0.003 (2)
O1—C11.315 (3)C4—C51.375 (4)
O1—H10.87 (4)C4—H40.9300
O2—C11.208 (3)C5—C61.386 (3)
O3—C71.257 (3)C5—H50.9300
O4—C71.240 (3)C6—C71.520 (3)
O5—C141.401 (4)C8—C91.417 (3)
O5—H5A0.78 (5)C9—C101.367 (4)
N1—C61.332 (3)C9—H90.9300
N1—C21.335 (3)C10—C111.407 (4)
N2—C81.347 (3)C10—C131.504 (4)
N2—C121.356 (3)C11—C121.356 (4)
N2—H20.85 (3)C11—H110.9300
N3—C81.318 (3)C12—H120.9300
N3—H3A0.87 (4)C13—H13A0.9600
N3—H3B0.83 (4)C13—H13B0.9600
C2—C31.378 (4)C13—H13C0.9600
C2—C11.503 (3)C14—H14A0.9600
C3—C41.376 (4)C14—H14B0.9600
C3—H30.9300C14—H14C0.9600
C1—O1—H1112 (3)O3—C7—C6117.74 (19)
C14—O5—H5A106 (3)N3—C8—N2118.9 (2)
C6—N1—C2118.17 (19)N3—C8—C9123.1 (2)
C8—N2—C12122.1 (2)N2—C8—C9118.0 (2)
C8—N2—H2118 (2)C10—C9—C8120.7 (2)
C12—N2—H2120 (2)C10—C9—H9119.6
C8—N3—H3A118 (2)C8—C9—H9119.6
C8—N3—H3B123 (2)C9—C10—C11118.7 (2)
H3A—N3—H3B118 (3)C9—C10—C13120.3 (3)
N1—C2—C3123.2 (2)C11—C10—C13121.0 (3)
N1—C2—C1115.8 (2)C12—C11—C10119.6 (2)
C3—C2—C1121.0 (2)C12—C11—H11120.2
C4—C3—C2118.5 (2)C10—C11—H11120.2
C4—C3—H3120.8C11—C12—N2120.9 (2)
C2—C3—H3120.8C11—C12—H12119.5
C5—C4—C3118.9 (2)N2—C12—H12119.5
C5—C4—H4120.6C10—C13—H13A109.5
C3—C4—H4120.6C10—C13—H13B109.5
C4—C5—C6119.3 (2)H13A—C13—H13B109.5
C4—C5—H5120.3C10—C13—H13C109.5
C6—C5—H5120.3H13A—C13—H13C109.5
N1—C6—C5122.0 (2)H13B—C13—H13C109.5
N1—C6—C7117.22 (19)O5—C14—H14A109.5
C5—C6—C7120.77 (19)O5—C14—H14B109.5
O2—C1—O1121.0 (2)H14A—C14—H14B109.5
O2—C1—C2122.2 (2)O5—C14—H14C109.5
O1—C1—C2116.8 (2)H14A—C14—H14C109.5
O4—C7—O3125.9 (2)H14B—C14—H14C109.5
O4—C7—C6116.3 (2)
C6—N1—C2—C3−0.8 (3)N1—C6—C7—O4−180.0 (2)
C6—N1—C2—C1178.48 (19)C5—C6—C7—O40.1 (4)
N1—C2—C3—C4−0.5 (4)N1—C6—C7—O3−0.6 (3)
C1—C2—C3—C4−179.8 (2)C5—C6—C7—O3179.4 (2)
C2—C3—C4—C51.1 (4)C12—N2—C8—N3−178.6 (3)
C3—C4—C5—C6−0.4 (4)C12—N2—C8—C90.4 (4)
C2—N1—C6—C51.5 (3)N3—C8—C9—C10178.9 (3)
C2—N1—C6—C7−178.5 (2)N2—C8—C9—C100.0 (4)
C4—C5—C6—N1−0.9 (4)C8—C9—C10—C11−0.5 (4)
C4—C5—C6—C7179.1 (2)C8—C9—C10—C13179.1 (2)
N1—C2—C1—O2−172.4 (2)C9—C10—C11—C120.5 (4)
C3—C2—C1—O26.9 (4)C13—C10—C11—C12−179.0 (3)
N1—C2—C1—O16.6 (3)C10—C11—C12—N2−0.1 (4)
C3—C2—C1—O1−174.1 (2)C8—N2—C12—C11−0.3 (4)
D—H···AD—HH···AD···AD—H···A
C14—H14C···O2i0.962.593.488 (5)157.
O5—H5A···O3ii0.78 (5)2.02 (5)2.796 (3)170 (4)
N3—H3B···O4iii0.83 (4)1.95 (4)2.764 (3)166 (3)
N3—H3A···O2i0.87 (4)2.30 (4)3.122 (3)158 (3)
N2—H2···O3iii0.85 (3)1.87 (3)2.723 (3)173 (3)
O1—H1···O5iv0.87 (4)1.87 (4)2.689 (3)156 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14C⋯O2i0.962.593.488 (5)157
O5—H5A⋯O3ii0.78 (5)2.02 (5)2.796 (3)170 (4)
N3—H3B⋯O4iii0.83 (4)1.95 (4)2.764 (3)166 (3)
N3—H3A⋯O2i0.87 (4)2.30 (4)3.122 (3)158 (3)
N2—H2⋯O3iii0.85 (3)1.87 (3)2.723 (3)173 (3)
O1—H1⋯O5iv0.87 (4)1.87 (4)2.689 (3)156 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Acta Crystallogr C       Date:  2007-04-21       Impact factor: 1.172

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

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Authors:  Hossein Aghabozorg; Azadeh Mofidi Rouchi; Behrouz Notash; Masoud Mirzaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

3.  2,3-Diamino-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate.

Authors:  Mahsa Foroughian; Alireza Foroumadi; Behrouz Notash; Giuseppe Bruno; Hadi Amiri Rudbari; Hossein Aghabozorg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16

4.  Bis(dicyclo-hexyl-aminium) 2-carb-oxy-methyl-2-hy-droxy-succinate ethanol monosolvate.

Authors:  Mahsa Foroughian; Behrouz Notash; Abbas Shafiee; Hossein Aghabozorg; Alireza Foroumadi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25

5.  Di-μ-chlorido-bis-[(2-amino-4-methyl-pyridine-κN)-chloridomercury(II)].

Authors:  Azadeh Tadjarodi; Keyvan Bijanzad; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
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