| Literature DB >> 21589522 |
Mahboubeh A Sharif, Masoumeh Tabatabaee, Mahnaz Adinehloo, Hossein Aghabozorg.
Abstract
In the title compound, C(6)H(9)N(2) (+)·C(7)H(4)NO(4) (-)·1.5H(2)O, extensive O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds, as well as ion pairing, π-π stacking inter-actions [centroid-centroid distances = 3.4690 (8) and 3.6932 (8) Å between aromatic rings] occur in the crystal. There are hydrogen-bonding inter-actions between water mol-ecules, which result in cyclic tetra-meric water clusters. One of the water O molecules has half occupancy. In the anion molecules, the -CO(2) and -CO(2)H groups make torsion angles of 1.73 (18) and -12.14 (18)° with respect to the ring.Entities:
Year: 2010 PMID: 21589522 PMCID: PMC3011762 DOI: 10.1107/S1600536810046866
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H9N2+·C7H4NO4−·1.5H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1125 reflections |
| θ = 2–25° | |
| µ = 0.11 mm−1 | |
| β = 93.951 (1)° | Rhombic, colorless |
| 0.20 × 0.20 × 0.10 mm | |
| Bruker SMART 1000 CCD area detector diffractometer | 3801 independent reflections |
| Radiation source: fine-focus sealed tube | 3077 reflections with |
| graphite | |
| φ and ω scans | θmax = 29.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 15297 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3801 reflections | (Δ/σ)max = 0.001 |
| 216 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.26470 (12) | −0.06479 (14) | 0.64545 (5) | 0.0309 (2) | |
| H1O | 0.356 (3) | −0.019 (3) | 0.6373 (11) | 0.066 (7)* | |
| O2 | 0.06351 (11) | 0.00989 (15) | 0.68870 (5) | 0.0325 (2) | |
| O3 | 0.64297 (10) | 0.62489 (14) | 0.66239 (5) | 0.0288 (2) | |
| O4 | 0.65846 (10) | 0.32081 (14) | 0.64256 (5) | 0.0264 (2) | |
| O1W | 0.53707 (11) | 0.96510 (15) | 0.61389 (5) | 0.0305 (2) | |
| H1WA | 0.5713 | 1.0680 | 0.6275 | 0.037* | |
| H1WB | 0.5756 | 0.8707 | 0.6320 | 0.037* | |
| O2W | 0.6530 (2) | 1.0929 (3) | 0.49926 (10) | 0.0310 (5) | 0.50 |
| H2WB | 0.5892 | 1.0666 | 0.4704 | 0.037* | 0.50 |
| H2WA | 0.6142 | 1.0552 | 0.5315 | 0.037* | 0.50 |
| N1 | 0.38249 (11) | 0.26733 (15) | 0.67222 (5) | 0.0192 (2) | |
| N2 | 0.91543 (12) | 0.37469 (16) | 0.59293 (5) | 0.0223 (2) | |
| H2N | 0.822 (2) | 0.364 (3) | 0.6099 (9) | 0.043 (5)* | |
| N3 | 0.93113 (13) | 0.67564 (18) | 0.62910 (6) | 0.0270 (3) | |
| H3NB | 0.835 (2) | 0.658 (3) | 0.6447 (8) | 0.037 (5)* | |
| H3NA | 0.986 (2) | 0.776 (3) | 0.6395 (9) | 0.044 (5)* | |
| C1 | 0.25047 (13) | 0.23786 (18) | 0.69207 (6) | 0.0199 (2) | |
| C2 | 0.17514 (14) | 0.3666 (2) | 0.72513 (6) | 0.0232 (3) | |
| H2A | 0.0818 | 0.3388 | 0.7386 | 0.028* | |
| C3 | 0.23996 (14) | 0.5369 (2) | 0.73793 (6) | 0.0247 (3) | |
| H3A | 0.1922 | 0.6286 | 0.7607 | 0.030* | |
| C4 | 0.37662 (14) | 0.57143 (19) | 0.71688 (6) | 0.0223 (3) | |
| H4A | 0.4232 | 0.6876 | 0.7247 | 0.027* | |
| C5 | 0.44366 (13) | 0.43305 (18) | 0.68430 (6) | 0.0188 (2) | |
| C6 | 0.18551 (15) | 0.05222 (19) | 0.67584 (7) | 0.0246 (3) | |
| C7 | 0.59368 (14) | 0.46266 (18) | 0.66116 (6) | 0.0210 (3) | |
| C8 | 0.99015 (14) | 0.53539 (19) | 0.59952 (6) | 0.0213 (3) | |
| C9 | 1.12726 (14) | 0.5468 (2) | 0.57398 (6) | 0.0225 (3) | |
| H9A | 1.1815 | 0.6589 | 0.5776 | 0.027* | |
| C10 | 1.18187 (14) | 0.3971 (2) | 0.54415 (6) | 0.0236 (3) | |
| C11 | 1.09980 (15) | 0.2309 (2) | 0.53908 (7) | 0.0262 (3) | |
| H11A | 1.1361 | 0.1252 | 0.5189 | 0.031* | |
| C12 | 0.96820 (15) | 0.2250 (2) | 0.56356 (7) | 0.0260 (3) | |
| H12A | 0.9122 | 0.1143 | 0.5601 | 0.031* | |
| C13 | 1.32713 (15) | 0.4067 (2) | 0.51713 (7) | 0.0304 (3) | |
| H13A | 1.3607 | 0.5359 | 0.5172 | 0.046* | |
| H13B | 1.3184 | 0.3600 | 0.4745 | 0.046* | |
| H13C | 1.3971 | 0.3305 | 0.5420 | 0.046* |
| O1 | 0.0254 (5) | 0.0214 (5) | 0.0463 (6) | −0.0024 (4) | 0.0069 (4) | −0.0036 (4) |
| O2 | 0.0241 (5) | 0.0321 (6) | 0.0420 (6) | −0.0091 (4) | 0.0083 (4) | 0.0018 (5) |
| O3 | 0.0212 (5) | 0.0213 (5) | 0.0446 (6) | −0.0042 (4) | 0.0074 (4) | −0.0023 (4) |
| O4 | 0.0197 (4) | 0.0216 (5) | 0.0390 (6) | 0.0005 (4) | 0.0097 (4) | −0.0001 (4) |
| O1W | 0.0315 (5) | 0.0227 (5) | 0.0377 (6) | 0.0012 (4) | 0.0043 (4) | −0.0029 (4) |
| O2W | 0.0253 (10) | 0.0408 (12) | 0.0271 (10) | 0.0025 (9) | 0.0032 (8) | −0.0036 (9) |
| N1 | 0.0168 (5) | 0.0204 (5) | 0.0208 (5) | 0.0003 (4) | 0.0027 (4) | 0.0018 (4) |
| N2 | 0.0180 (5) | 0.0242 (6) | 0.0251 (5) | −0.0012 (4) | 0.0040 (4) | 0.0003 (4) |
| N3 | 0.0209 (6) | 0.0264 (6) | 0.0345 (7) | −0.0019 (5) | 0.0076 (5) | −0.0054 (5) |
| C1 | 0.0181 (6) | 0.0217 (6) | 0.0201 (6) | −0.0010 (5) | 0.0022 (4) | 0.0027 (5) |
| C2 | 0.0188 (6) | 0.0295 (7) | 0.0219 (6) | 0.0004 (5) | 0.0046 (5) | 0.0015 (5) |
| C3 | 0.0220 (6) | 0.0287 (7) | 0.0236 (6) | 0.0040 (5) | 0.0039 (5) | −0.0045 (5) |
| C4 | 0.0202 (6) | 0.0216 (6) | 0.0249 (6) | 0.0000 (5) | 0.0011 (5) | −0.0032 (5) |
| C5 | 0.0163 (5) | 0.0207 (6) | 0.0196 (6) | 0.0008 (5) | 0.0026 (4) | 0.0010 (5) |
| C6 | 0.0235 (6) | 0.0224 (6) | 0.0280 (7) | −0.0027 (5) | 0.0030 (5) | 0.0041 (5) |
| C7 | 0.0177 (6) | 0.0212 (6) | 0.0242 (6) | −0.0007 (5) | 0.0022 (5) | 0.0015 (5) |
| C8 | 0.0182 (6) | 0.0239 (6) | 0.0219 (6) | 0.0003 (5) | 0.0019 (5) | 0.0011 (5) |
| C9 | 0.0175 (6) | 0.0263 (7) | 0.0239 (6) | −0.0020 (5) | 0.0025 (5) | 0.0022 (5) |
| C10 | 0.0169 (6) | 0.0325 (7) | 0.0217 (6) | 0.0024 (5) | 0.0032 (5) | 0.0034 (5) |
| C11 | 0.0248 (6) | 0.0275 (7) | 0.0266 (7) | 0.0038 (5) | 0.0038 (5) | −0.0028 (5) |
| C12 | 0.0248 (6) | 0.0244 (7) | 0.0288 (7) | −0.0012 (5) | 0.0019 (5) | −0.0018 (5) |
| C13 | 0.0207 (6) | 0.0409 (8) | 0.0304 (7) | 0.0028 (6) | 0.0082 (5) | 0.0023 (6) |
| O1—C6 | 1.3204 (17) | C2—C3 | 1.384 (2) |
| O1—H1O | 0.93 (2) | C2—H2A | 0.9500 |
| O2—C6 | 1.2179 (17) | C3—C4 | 1.3937 (18) |
| O3—C7 | 1.2528 (16) | C3—H3A | 0.9500 |
| O4—C7 | 1.2632 (16) | C4—C5 | 1.3904 (18) |
| O1W—H1WA | 0.8500 | C4—H4A | 0.9500 |
| O1W—H1WB | 0.8500 | C5—C7 | 1.5206 (17) |
| O2W—H2WB | 0.8500 | C8—C9 | 1.4188 (17) |
| O2W—H2WA | 0.8501 | C9—C10 | 1.3701 (19) |
| N1—C1 | 1.3375 (16) | C9—H9A | 0.9500 |
| N1—C5 | 1.3379 (17) | C10—C11 | 1.416 (2) |
| N2—C8 | 1.3494 (17) | C10—C13 | 1.5019 (18) |
| N2—C12 | 1.3583 (18) | C11—C12 | 1.3598 (19) |
| N2—H2N | 0.96 (2) | C11—H11A | 0.9500 |
| N3—C8 | 1.3320 (18) | C12—H12A | 0.9500 |
| N3—H3NB | 0.978 (19) | C13—H13A | 0.9800 |
| N3—H3NA | 0.90 (2) | C13—H13B | 0.9800 |
| C1—C2 | 1.3872 (18) | C13—H13C | 0.9800 |
| C1—C6 | 1.4966 (19) | ||
| C6—O1—H1O | 114.2 (15) | O2—C6—C1 | 122.14 (13) |
| H1WA—O1W—H1WB | 113.8 | O1—C6—C1 | 117.35 (12) |
| H2WB—O2W—H2WA | 102.8 | O3—C7—O4 | 125.49 (12) |
| C1—N1—C5 | 117.44 (11) | O3—C7—C5 | 117.50 (12) |
| C8—N2—C12 | 122.13 (12) | O4—C7—C5 | 117.01 (11) |
| C8—N2—H2N | 119.4 (12) | N3—C8—N2 | 118.49 (12) |
| C12—N2—H2N | 118.5 (12) | N3—C8—C9 | 123.32 (13) |
| C8—N3—H3NB | 118.6 (11) | N2—C8—C9 | 118.18 (12) |
| C8—N3—H3NA | 119.0 (13) | C10—C9—C8 | 120.37 (13) |
| H3NB—N3—H3NA | 121.7 (17) | C10—C9—H9A | 119.8 |
| N1—C1—C2 | 124.10 (12) | C8—C9—H9A | 119.8 |
| N1—C1—C6 | 115.21 (12) | C9—C10—C11 | 119.22 (12) |
| C2—C1—C6 | 120.69 (12) | C9—C10—C13 | 121.01 (13) |
| C3—C2—C1 | 118.01 (12) | C11—C10—C13 | 119.77 (13) |
| C3—C2—H2A | 121.0 | C12—C11—C10 | 118.97 (13) |
| C1—C2—H2A | 121.0 | C12—C11—H11A | 120.5 |
| C2—C3—C4 | 118.79 (12) | C10—C11—H11A | 120.5 |
| C2—C3—H3A | 120.6 | N2—C12—C11 | 121.12 (13) |
| C4—C3—H3A | 120.6 | N2—C12—H12A | 119.4 |
| C5—C4—C3 | 118.91 (13) | C11—C12—H12A | 119.4 |
| C5—C4—H4A | 120.5 | C10—C13—H13A | 109.5 |
| C3—C4—H4A | 120.5 | C10—C13—H13B | 109.5 |
| N1—C5—C4 | 122.74 (11) | H13A—C13—H13B | 109.5 |
| N1—C5—C7 | 116.28 (11) | C10—C13—H13C | 109.5 |
| C4—C5—C7 | 120.97 (12) | H13A—C13—H13C | 109.5 |
| O2—C6—O1 | 120.49 (13) | H13B—C13—H13C | 109.5 |
| C5—N1—C1—C2 | −1.24 (19) | N1—C5—C7—O3 | 168.20 (12) |
| C5—N1—C1—C6 | 178.42 (11) | C4—C5—C7—O3 | −12.68 (19) |
| N1—C1—C2—C3 | 0.6 (2) | N1—C5—C7—O4 | −12.13 (17) |
| C6—C1—C2—C3 | −179.05 (12) | C4—C5—C7—O4 | 166.98 (12) |
| C1—C2—C3—C4 | 0.4 (2) | C12—N2—C8—N3 | −179.79 (13) |
| C2—C3—C4—C5 | −0.6 (2) | C12—N2—C8—C9 | 0.82 (19) |
| C1—N1—C5—C4 | 0.94 (18) | N3—C8—C9—C10 | 179.92 (13) |
| C1—N1—C5—C7 | −179.97 (11) | N2—C8—C9—C10 | −0.72 (19) |
| C3—C4—C5—N1 | 0.0 (2) | C8—C9—C10—C11 | 0.0 (2) |
| C3—C4—C5—C7 | −179.08 (12) | C8—C9—C10—C13 | −179.71 (13) |
| N1—C1—C6—O2 | −176.83 (13) | C9—C10—C11—C12 | 0.5 (2) |
| C2—C1—C6—O2 | 2.8 (2) | C13—C10—C11—C12 | −179.69 (13) |
| N1—C1—C6—O1 | 1.73 (18) | C8—N2—C12—C11 | −0.2 (2) |
| C2—C1—C6—O1 | −178.60 (12) | C10—C11—C12—N2 | −0.5 (2) |
| H··· | ||||
| O1W—H1WA···O4i | 0.85 | 2.01 | 2.846 (2) | 169 |
| O1W—H1WA···N1i | 0.85 | 2.50 | 2.935 (2) | 112 |
| O1W—H1WB···O3 | 0.85 | 1.97 | 2.813 (2) | 169 |
| O2W—H2WB···O1Wii | 0.85 | 2.11 | 2.944 (2) | 167 |
| O2W—H2WA···O1W | 0.85 | 2.07 | 2.919 (2) | 175 |
| O1—H1O···O1Wiii | 0.93 (3) | 1.78 (3) | 2.661 (2) | 155 (2) |
| O1—H1O···N1 | 0.93 (3) | 2.20 (2) | 2.673 (2) | 110 (2) |
| N2—H2N···O4 | 0.96 (2) | 1.74 (2) | 2.700 (2) | 174 (2) |
| N3—H3NB···O3 | 0.98 (2) | 1.86 (2) | 2.829 (2) | 172 (2) |
| N3—H3NA···O2iv | 0.90 (2) | 2.09 (2) | 2.955 (2) | 160 (2) |
| C2—H2A···O2v | 0.95 | 2.47 | 3.158 (2) | 129 |
| C9—H9A···O1iv | 0.95 | 2.56 | 3.399 (2) | 147 |
| C11—H11A···O2Wvi | 0.95 | 2.55 | 3.405 (2) | 149 |
| Cg(1)N2/C8–C12—···.Cg(1)vi | . | . | 3.4690 (8) | . |
| Cg(1)—···.Cg(2)N1/C1–C5vii | . | . | 3.6932 (8) | . |
| C7—O3···Cg(2)viii | . | 3.5023 (12) | . | 124.86 (9) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.85 | 2.01 | 2.846 (2) | 169 |
| O1 | 0.85 | 1.97 | 2.813 (2) | 169 |
| O2 | 0.85 | 2.11 | 2.944 (2) | 167 |
| O2 | 0.85 | 2.07 | 2.919 (2) | 175 |
| O1—H1 | 0.93 (3) | 1.78 (3) | 2.661 (2) | 155 (2) |
| N2—H2 | 0.96 (2) | 1.74 (2) | 2.700 (2) | 174 (2) |
| N3—H3 | 0.98 (2) | 1.86 (2) | 2.829 (2) | 172 (2) |
| N3—H3 | 0.90 (2) | 2.09 (2) | 2.955 (2) | 160 (2) |
| C2—H2 | 0.95 | 2.47 | 3.158 (2) | 129 |
| C9—H9 | 0.95 | 2.56 | 3.399 (2) | 147 |
| C11—H11 | 0.95 | 2.55 | 3.405 (2) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .