Literature DB >> 21589522

2-Amino-4-methyl-pyridinium 6-carb-oxy-pyridine-2-carboxyl-ate sesquihydrate.

Mahboubeh A Sharif, Masoumeh Tabatabaee, Mahnaz Adinehloo, Hossein Aghabozorg.   

Abstract

In the title compound, C(6)H(9)N(2) (+)·C(7)H(4)NO(4) (-)·1.5H(2)O, extensive O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds, as well as ion pairing, π-π stacking inter-actions [centroid-centroid distances = 3.4690 (8) and 3.6932 (8) Å between aromatic rings] occur in the crystal. There are hydrogen-bonding inter-actions between water mol-ecules, which result in cyclic tetra-meric water clusters. One of the water O molecules has half occupancy. In the anion molecules, the -CO(2) and -CO(2)H groups make torsion angles of 1.73 (18) and -12.14 (18)° with respect to the ring.

Entities:  

Year:  2010        PMID: 21589522      PMCID: PMC3011762          DOI: 10.1107/S1600536810046866

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to hydrogen bonding involving water, see: Long et al. (2004 ▶); Atwood et al., 2001 ▶); Miyake & Aida (2003 ▶). For related structures, see: Aghabozorg et al. (2008 ▶); Tabatabaee et al. (2009 ▶).

Experimental

Crystal data

C6H9N2 +·C7H4NO4 −·1.5H2O M = 302.29 Monoclinic, a = 9.2373 (6) Å b = 7.1972 (5) Å c = 21.6495 (14) Å β = 93.951 (1)° V = 1435.90 (17) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 120 K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART 1000 CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.980, T max = 0.995 15297 measured reflections 3801 independent reflections 3077 reflections with I > 2.0σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.102 S = 0.99 3801 reflections 216 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I. DOI: 10.1107/S1600536810046866/pv2352sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046866/pv2352Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C7H4NO4·1.5H2OF(000) = 636
Mr = 302.29Dx = 1.398 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1125 reflections
a = 9.2373 (6) Åθ = 2–25°
b = 7.1972 (5) ŵ = 0.11 mm1
c = 21.6495 (14) ÅT = 120 K
β = 93.951 (1)°Rhombic, colorless
V = 1435.90 (17) Å30.20 × 0.20 × 0.10 mm
Z = 4
Bruker SMART 1000 CCD area detector diffractometer3801 independent reflections
Radiation source: fine-focus sealed tube3077 reflections with I > 2.0σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 29.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −12→12
Tmin = 0.980, Tmax = 0.995k = −9→9
15297 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: mixed
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0244P)2 + 1.3516P] where P = (Fo2 + 2Fc2)/3
3801 reflections(Δ/σ)max = 0.001
216 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.26470 (12)−0.06479 (14)0.64545 (5)0.0309 (2)
H1O0.356 (3)−0.019 (3)0.6373 (11)0.066 (7)*
O20.06351 (11)0.00989 (15)0.68870 (5)0.0325 (2)
O30.64297 (10)0.62489 (14)0.66239 (5)0.0288 (2)
O40.65846 (10)0.32081 (14)0.64256 (5)0.0264 (2)
O1W0.53707 (11)0.96510 (15)0.61389 (5)0.0305 (2)
H1WA0.57131.06800.62750.037*
H1WB0.57560.87070.63200.037*
O2W0.6530 (2)1.0929 (3)0.49926 (10)0.0310 (5)0.50
H2WB0.58921.06660.47040.037*0.50
H2WA0.61421.05520.53150.037*0.50
N10.38249 (11)0.26733 (15)0.67222 (5)0.0192 (2)
N20.91543 (12)0.37469 (16)0.59293 (5)0.0223 (2)
H2N0.822 (2)0.364 (3)0.6099 (9)0.043 (5)*
N30.93113 (13)0.67564 (18)0.62910 (6)0.0270 (3)
H3NB0.835 (2)0.658 (3)0.6447 (8)0.037 (5)*
H3NA0.986 (2)0.776 (3)0.6395 (9)0.044 (5)*
C10.25047 (13)0.23786 (18)0.69207 (6)0.0199 (2)
C20.17514 (14)0.3666 (2)0.72513 (6)0.0232 (3)
H2A0.08180.33880.73860.028*
C30.23996 (14)0.5369 (2)0.73793 (6)0.0247 (3)
H3A0.19220.62860.76070.030*
C40.37662 (14)0.57143 (19)0.71688 (6)0.0223 (3)
H4A0.42320.68760.72470.027*
C50.44366 (13)0.43305 (18)0.68430 (6)0.0188 (2)
C60.18551 (15)0.05222 (19)0.67584 (7)0.0246 (3)
C70.59368 (14)0.46266 (18)0.66116 (6)0.0210 (3)
C80.99015 (14)0.53539 (19)0.59952 (6)0.0213 (3)
C91.12726 (14)0.5468 (2)0.57398 (6)0.0225 (3)
H9A1.18150.65890.57760.027*
C101.18187 (14)0.3971 (2)0.54415 (6)0.0236 (3)
C111.09980 (15)0.2309 (2)0.53908 (7)0.0262 (3)
H11A1.13610.12520.51890.031*
C120.96820 (15)0.2250 (2)0.56356 (7)0.0260 (3)
H12A0.91220.11430.56010.031*
C131.32713 (15)0.4067 (2)0.51713 (7)0.0304 (3)
H13A1.36070.53590.51720.046*
H13B1.31840.36000.47450.046*
H13C1.39710.33050.54200.046*
U11U22U33U12U13U23
O10.0254 (5)0.0214 (5)0.0463 (6)−0.0024 (4)0.0069 (4)−0.0036 (4)
O20.0241 (5)0.0321 (6)0.0420 (6)−0.0091 (4)0.0083 (4)0.0018 (5)
O30.0212 (5)0.0213 (5)0.0446 (6)−0.0042 (4)0.0074 (4)−0.0023 (4)
O40.0197 (4)0.0216 (5)0.0390 (6)0.0005 (4)0.0097 (4)−0.0001 (4)
O1W0.0315 (5)0.0227 (5)0.0377 (6)0.0012 (4)0.0043 (4)−0.0029 (4)
O2W0.0253 (10)0.0408 (12)0.0271 (10)0.0025 (9)0.0032 (8)−0.0036 (9)
N10.0168 (5)0.0204 (5)0.0208 (5)0.0003 (4)0.0027 (4)0.0018 (4)
N20.0180 (5)0.0242 (6)0.0251 (5)−0.0012 (4)0.0040 (4)0.0003 (4)
N30.0209 (6)0.0264 (6)0.0345 (7)−0.0019 (5)0.0076 (5)−0.0054 (5)
C10.0181 (6)0.0217 (6)0.0201 (6)−0.0010 (5)0.0022 (4)0.0027 (5)
C20.0188 (6)0.0295 (7)0.0219 (6)0.0004 (5)0.0046 (5)0.0015 (5)
C30.0220 (6)0.0287 (7)0.0236 (6)0.0040 (5)0.0039 (5)−0.0045 (5)
C40.0202 (6)0.0216 (6)0.0249 (6)0.0000 (5)0.0011 (5)−0.0032 (5)
C50.0163 (5)0.0207 (6)0.0196 (6)0.0008 (5)0.0026 (4)0.0010 (5)
C60.0235 (6)0.0224 (6)0.0280 (7)−0.0027 (5)0.0030 (5)0.0041 (5)
C70.0177 (6)0.0212 (6)0.0242 (6)−0.0007 (5)0.0022 (5)0.0015 (5)
C80.0182 (6)0.0239 (6)0.0219 (6)0.0003 (5)0.0019 (5)0.0011 (5)
C90.0175 (6)0.0263 (7)0.0239 (6)−0.0020 (5)0.0025 (5)0.0022 (5)
C100.0169 (6)0.0325 (7)0.0217 (6)0.0024 (5)0.0032 (5)0.0034 (5)
C110.0248 (6)0.0275 (7)0.0266 (7)0.0038 (5)0.0038 (5)−0.0028 (5)
C120.0248 (6)0.0244 (7)0.0288 (7)−0.0012 (5)0.0019 (5)−0.0018 (5)
C130.0207 (6)0.0409 (8)0.0304 (7)0.0028 (6)0.0082 (5)0.0023 (6)
O1—C61.3204 (17)C2—C31.384 (2)
O1—H1O0.93 (2)C2—H2A0.9500
O2—C61.2179 (17)C3—C41.3937 (18)
O3—C71.2528 (16)C3—H3A0.9500
O4—C71.2632 (16)C4—C51.3904 (18)
O1W—H1WA0.8500C4—H4A0.9500
O1W—H1WB0.8500C5—C71.5206 (17)
O2W—H2WB0.8500C8—C91.4188 (17)
O2W—H2WA0.8501C9—C101.3701 (19)
N1—C11.3375 (16)C9—H9A0.9500
N1—C51.3379 (17)C10—C111.416 (2)
N2—C81.3494 (17)C10—C131.5019 (18)
N2—C121.3583 (18)C11—C121.3598 (19)
N2—H2N0.96 (2)C11—H11A0.9500
N3—C81.3320 (18)C12—H12A0.9500
N3—H3NB0.978 (19)C13—H13A0.9800
N3—H3NA0.90 (2)C13—H13B0.9800
C1—C21.3872 (18)C13—H13C0.9800
C1—C61.4966 (19)
C6—O1—H1O114.2 (15)O2—C6—C1122.14 (13)
H1WA—O1W—H1WB113.8O1—C6—C1117.35 (12)
H2WB—O2W—H2WA102.8O3—C7—O4125.49 (12)
C1—N1—C5117.44 (11)O3—C7—C5117.50 (12)
C8—N2—C12122.13 (12)O4—C7—C5117.01 (11)
C8—N2—H2N119.4 (12)N3—C8—N2118.49 (12)
C12—N2—H2N118.5 (12)N3—C8—C9123.32 (13)
C8—N3—H3NB118.6 (11)N2—C8—C9118.18 (12)
C8—N3—H3NA119.0 (13)C10—C9—C8120.37 (13)
H3NB—N3—H3NA121.7 (17)C10—C9—H9A119.8
N1—C1—C2124.10 (12)C8—C9—H9A119.8
N1—C1—C6115.21 (12)C9—C10—C11119.22 (12)
C2—C1—C6120.69 (12)C9—C10—C13121.01 (13)
C3—C2—C1118.01 (12)C11—C10—C13119.77 (13)
C3—C2—H2A121.0C12—C11—C10118.97 (13)
C1—C2—H2A121.0C12—C11—H11A120.5
C2—C3—C4118.79 (12)C10—C11—H11A120.5
C2—C3—H3A120.6N2—C12—C11121.12 (13)
C4—C3—H3A120.6N2—C12—H12A119.4
C5—C4—C3118.91 (13)C11—C12—H12A119.4
C5—C4—H4A120.5C10—C13—H13A109.5
C3—C4—H4A120.5C10—C13—H13B109.5
N1—C5—C4122.74 (11)H13A—C13—H13B109.5
N1—C5—C7116.28 (11)C10—C13—H13C109.5
C4—C5—C7120.97 (12)H13A—C13—H13C109.5
O2—C6—O1120.49 (13)H13B—C13—H13C109.5
C5—N1—C1—C2−1.24 (19)N1—C5—C7—O3168.20 (12)
C5—N1—C1—C6178.42 (11)C4—C5—C7—O3−12.68 (19)
N1—C1—C2—C30.6 (2)N1—C5—C7—O4−12.13 (17)
C6—C1—C2—C3−179.05 (12)C4—C5—C7—O4166.98 (12)
C1—C2—C3—C40.4 (2)C12—N2—C8—N3−179.79 (13)
C2—C3—C4—C5−0.6 (2)C12—N2—C8—C90.82 (19)
C1—N1—C5—C40.94 (18)N3—C8—C9—C10179.92 (13)
C1—N1—C5—C7−179.97 (11)N2—C8—C9—C10−0.72 (19)
C3—C4—C5—N10.0 (2)C8—C9—C10—C110.0 (2)
C3—C4—C5—C7−179.08 (12)C8—C9—C10—C13−179.71 (13)
N1—C1—C6—O2−176.83 (13)C9—C10—C11—C120.5 (2)
C2—C1—C6—O22.8 (2)C13—C10—C11—C12−179.69 (13)
N1—C1—C6—O11.73 (18)C8—N2—C12—C11−0.2 (2)
C2—C1—C6—O1−178.60 (12)C10—C11—C12—N2−0.5 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O4i0.852.012.846 (2)169
O1W—H1WA···N1i0.852.502.935 (2)112
O1W—H1WB···O30.851.972.813 (2)169
O2W—H2WB···O1Wii0.852.112.944 (2)167
O2W—H2WA···O1W0.852.072.919 (2)175
O1—H1O···O1Wiii0.93 (3)1.78 (3)2.661 (2)155 (2)
O1—H1O···N10.93 (3)2.20 (2)2.673 (2)110 (2)
N2—H2N···O40.96 (2)1.74 (2)2.700 (2)174 (2)
N3—H3NB···O30.98 (2)1.86 (2)2.829 (2)172 (2)
N3—H3NA···O2iv0.90 (2)2.09 (2)2.955 (2)160 (2)
C2—H2A···O2v0.952.473.158 (2)129
C9—H9A···O1iv0.952.563.399 (2)147
C11—H11A···O2Wvi0.952.553.405 (2)149
Cg(1)N2/C8–C12—···.Cg(1)vi..3.4690 (8).
Cg(1)—···.Cg(2)N1/C1–C5vii..3.6932 (8).
C7—O3···Cg(2)viii.3.5023 (12).124.86 (9)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O4i0.852.012.846 (2)169
O1W—H1WB⋯O30.851.972.813 (2)169
O2W—H2WB⋯O1Wii0.852.112.944 (2)167
O2W—H2WA⋯O1W0.852.072.919 (2)175
O1—H1O⋯O1Wiii0.93 (3)1.78 (3)2.661 (2)155 (2)
N2—H2N⋯O40.96 (2)1.74 (2)2.700 (2)174 (2)
N3—H3NB⋯O30.98 (2)1.86 (2)2.829 (2)172 (2)
N3—H3NA⋯O2iv0.90 (2)2.09 (2)2.955 (2)160 (2)
C2—H2A⋯O2v0.952.473.158 (2)129
C9—H9A⋯O1iv0.952.563.399 (2)147
C11—H11A⋯O2Wvi0.952.553.405 (2)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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