| Literature DB >> 22199767 |
Jing Xu, Shan Gao, Seik Weng Ng.
Abstract
In the title compound, C(11)H(11)N(3)O, the aromatic rings at either ends of the -CH(2)-NH- link are twisted by 72.58 (8)°; the hy-droxy substituent is a hydrogen-bond donor to an N atom of the pyrimidine ring. The other N atom of the pyrimidine ring is a hydrogen-bond acceptor to the amino group of an inversion-related mol-ecule.Entities:
Year: 2011 PMID: 22199767 PMCID: PMC3238918 DOI: 10.1107/S1600536811046848
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H11N3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 6005 reflections |
| θ = 3.1–27.4° | |
| µ = 0.09 mm−1 | |
| β = 95.208 (2)° | Prism, colorless |
| 0.22 × 0.17 × 0.15 mm | |
| Rigaku R-AXIS RAPID IP diffractometer | 2296 independent reflections |
| Radiation source: fine-focus sealed tube | 1476 reflections with |
| graphite | |
| ω scan | θmax = 27.4°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 9626 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2296 reflections | (Δ/σ)max = 0.001 |
| 144 parameters | Δρmax = 0.14 e Å−3 |
| 2 restraints | Δρmin = −0.15 e Å−3 |
| O1 | 1.0476 (2) | 0.91985 (13) | 0.62203 (7) | 0.0630 (4) | |
| N1 | 0.5979 (2) | 0.67826 (16) | 0.53868 (8) | 0.0571 (4) | |
| N2 | 0.9251 (2) | 0.77099 (14) | 0.49494 (7) | 0.0534 (4) | |
| N3 | 0.7438 (2) | 0.55875 (14) | 0.44465 (7) | 0.0517 (4) | |
| C1 | 0.9836 (3) | 0.82174 (16) | 0.67131 (9) | 0.0488 (4) | |
| C2 | 1.1341 (3) | 0.79323 (18) | 0.73237 (9) | 0.0554 (4) | |
| H2 | 1.2718 | 0.8428 | 0.7393 | 0.066* | |
| C3 | 1.0819 (3) | 0.69305 (19) | 0.78229 (10) | 0.0622 (5) | |
| H3 | 1.1850 | 0.6737 | 0.8225 | 0.075* | |
| C4 | 0.8756 (3) | 0.62029 (19) | 0.77307 (10) | 0.0646 (5) | |
| H4 | 0.8405 | 0.5512 | 0.8066 | 0.078* | |
| C5 | 0.7224 (3) | 0.65110 (18) | 0.71357 (10) | 0.0581 (4) | |
| H5 | 0.5827 | 0.6034 | 0.7081 | 0.070* | |
| C6 | 0.7718 (2) | 0.75136 (16) | 0.66180 (9) | 0.0500 (4) | |
| C7 | 0.5997 (3) | 0.78265 (19) | 0.59729 (9) | 0.0580 (4) | |
| H7A | 0.4480 | 0.7868 | 0.6143 | 0.070* | |
| H7B | 0.6329 | 0.8760 | 0.5779 | 0.070* | |
| C8 | 0.7604 (2) | 0.66981 (16) | 0.49207 (8) | 0.0478 (4) | |
| C9 | 1.0801 (3) | 0.75831 (19) | 0.44642 (10) | 0.0574 (4) | |
| H9 | 1.1954 | 0.8266 | 0.4466 | 0.069* | |
| C10 | 1.0780 (3) | 0.65013 (19) | 0.39651 (9) | 0.0593 (5) | |
| H10 | 1.1880 | 0.6432 | 0.3633 | 0.071* | |
| C11 | 0.9034 (3) | 0.55172 (19) | 0.39818 (9) | 0.0550 (4) | |
| H11 | 0.8973 | 0.4766 | 0.3650 | 0.066* | |
| H1O | 1.000 (4) | 0.889 (3) | 0.5791 (8) | 0.117 (9)* | |
| H1N | 0.501 (3) | 0.6073 (14) | 0.5417 (10) | 0.062 (5)* |
| O1 | 0.0674 (8) | 0.0543 (7) | 0.0667 (8) | −0.0114 (5) | 0.0032 (6) | 0.0017 (6) |
| N1 | 0.0425 (7) | 0.0658 (9) | 0.0629 (8) | −0.0070 (6) | 0.0040 (6) | −0.0127 (7) |
| N2 | 0.0488 (7) | 0.0504 (8) | 0.0601 (8) | −0.0022 (6) | 0.0006 (6) | 0.0040 (6) |
| N3 | 0.0495 (7) | 0.0547 (8) | 0.0500 (7) | 0.0018 (6) | 0.0006 (6) | −0.0008 (6) |
| C1 | 0.0492 (8) | 0.0404 (8) | 0.0572 (9) | 0.0000 (6) | 0.0070 (7) | −0.0069 (7) |
| C2 | 0.0488 (8) | 0.0575 (10) | 0.0590 (10) | −0.0035 (7) | −0.0001 (8) | −0.0112 (8) |
| C3 | 0.0656 (11) | 0.0631 (11) | 0.0563 (10) | 0.0039 (8) | −0.0026 (8) | −0.0032 (8) |
| C4 | 0.0772 (12) | 0.0569 (10) | 0.0611 (10) | −0.0049 (9) | 0.0134 (9) | 0.0010 (8) |
| C5 | 0.0504 (9) | 0.0557 (10) | 0.0694 (11) | −0.0077 (7) | 0.0120 (8) | −0.0116 (8) |
| C6 | 0.0427 (8) | 0.0484 (9) | 0.0591 (10) | 0.0026 (6) | 0.0064 (7) | −0.0118 (7) |
| C7 | 0.0446 (8) | 0.0635 (10) | 0.0652 (10) | 0.0062 (7) | 0.0016 (8) | −0.0130 (8) |
| C8 | 0.0426 (8) | 0.0499 (9) | 0.0494 (8) | 0.0026 (6) | −0.0039 (7) | 0.0025 (7) |
| C9 | 0.0523 (9) | 0.0568 (10) | 0.0629 (10) | −0.0025 (7) | 0.0042 (8) | 0.0124 (8) |
| C10 | 0.0572 (10) | 0.0637 (11) | 0.0581 (10) | 0.0031 (8) | 0.0100 (8) | 0.0067 (8) |
| C11 | 0.0581 (9) | 0.0561 (10) | 0.0503 (9) | 0.0067 (8) | 0.0019 (8) | 0.0012 (7) |
| O1—C1 | 1.367 (2) | C3—H3 | 0.9300 |
| O1—H1O | 0.863 (10) | C4—C5 | 1.382 (3) |
| N1—C8 | 1.341 (2) | C4—H4 | 0.9300 |
| N1—C7 | 1.455 (2) | C5—C6 | 1.387 (2) |
| N1—H1N | 0.878 (9) | C5—H5 | 0.9300 |
| N2—C9 | 1.336 (2) | C6—C7 | 1.515 (2) |
| N2—C8 | 1.350 (2) | C7—H7A | 0.9700 |
| N3—C11 | 1.325 (2) | C7—H7B | 0.9700 |
| N3—C8 | 1.3552 (19) | C9—C10 | 1.367 (2) |
| C1—C2 | 1.390 (2) | C9—H9 | 0.9300 |
| C1—C6 | 1.402 (2) | C10—C11 | 1.380 (2) |
| C2—C3 | 1.367 (2) | C10—H10 | 0.9300 |
| C2—H2 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.385 (3) | ||
| C1—O1—H1O | 107.4 (18) | C5—C6—C1 | 118.05 (15) |
| C8—N1—C7 | 123.78 (14) | C5—C6—C7 | 120.21 (15) |
| C8—N1—H1N | 119.7 (12) | C1—C6—C7 | 121.74 (15) |
| C7—N1—H1N | 115.0 (12) | N1—C7—C6 | 114.25 (13) |
| C9—N2—C8 | 116.03 (14) | N1—C7—H7A | 108.7 |
| C11—N3—C8 | 116.12 (14) | C6—C7—H7A | 108.7 |
| O1—C1—C2 | 118.23 (14) | N1—C7—H7B | 108.7 |
| O1—C1—C6 | 121.74 (14) | C6—C7—H7B | 108.7 |
| C2—C1—C6 | 120.03 (15) | H7A—C7—H7B | 107.6 |
| C3—C2—C1 | 120.70 (15) | N1—C8—N2 | 118.73 (14) |
| C3—C2—H2 | 119.7 | N1—C8—N3 | 116.33 (14) |
| C1—C2—H2 | 119.7 | N2—C8—N3 | 124.93 (15) |
| C2—C3—C4 | 120.10 (16) | N2—C9—C10 | 123.37 (16) |
| C2—C3—H3 | 120.0 | N2—C9—H9 | 118.3 |
| C4—C3—H3 | 120.0 | C10—C9—H9 | 118.3 |
| C5—C4—C3 | 119.47 (17) | C9—C10—C11 | 116.19 (16) |
| C5—C4—H4 | 120.3 | C9—C10—H10 | 121.9 |
| C3—C4—H4 | 120.3 | C11—C10—H10 | 121.9 |
| C4—C5—C6 | 121.60 (16) | N3—C11—C10 | 123.36 (16) |
| C4—C5—H5 | 119.2 | N3—C11—H11 | 118.3 |
| C6—C5—H5 | 119.2 | C10—C11—H11 | 118.3 |
| O1—C1—C2—C3 | −178.05 (15) | C5—C6—C7—N1 | −79.8 (2) |
| C6—C1—C2—C3 | 2.4 (2) | C1—C6—C7—N1 | 100.33 (18) |
| C1—C2—C3—C4 | −1.1 (3) | C7—N1—C8—N2 | −6.1 (2) |
| C2—C3—C4—C5 | −0.8 (3) | C7—N1—C8—N3 | 174.43 (14) |
| C3—C4—C5—C6 | 1.4 (3) | C9—N2—C8—N1 | −178.93 (13) |
| C4—C5—C6—C1 | 0.0 (2) | C9—N2—C8—N3 | 0.4 (2) |
| C4—C5—C6—C7 | −179.92 (15) | C11—N3—C8—N1 | 179.28 (13) |
| O1—C1—C6—C5 | 178.65 (14) | C11—N3—C8—N2 | −0.1 (2) |
| C2—C1—C6—C5 | −1.8 (2) | C8—N2—C9—C10 | −0.5 (2) |
| O1—C1—C6—C7 | −1.5 (2) | N2—C9—C10—C11 | 0.2 (2) |
| C2—C1—C6—C7 | 178.06 (14) | C8—N3—C11—C10 | −0.2 (2) |
| C8—N1—C7—C6 | −74.7 (2) | C9—C10—C11—N3 | 0.2 (2) |
| H··· | ||||
| O1—H1o···N2 | 0.86 (1) | 1.92 (1) | 2.761 (2) | 164 (2) |
| N1—H1n···N3i | 0.88 (1) | 2.15 (1) | 3.023 (2) | 176 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1o⋯N2 | 0.86 (1) | 1.92 (1) | 2.761 (2) | 164 (2) |
| N1—H1n⋯N3i | 0.88 (1) | 2.15 (1) | 3.023 (2) | 176 (2) |
Symmetry code: (i) .