Literature DB >> 22194570

How a DNA polymerase clamp loader opens a sliding clamp.

Brian A Kelch1, Debora L Makino, Mike O'Donnell, John Kuriyan.   

Abstract

Processive chromosomal replication relies on sliding DNA clamps, which are loaded onto DNA by pentameric clamp loader complexes belonging to the AAA+ family of adenosine triphosphatases (ATPases). We present structures for the ATP-bound state of the clamp loader complex from bacteriophage T4, bound to an open clamp and primer-template DNA. The clamp loader traps a spiral conformation of the open clamp so that both the loader and the clamp match the helical symmetry of DNA. One structure reveals that ATP has been hydrolyzed in one subunit and suggests that clamp closure and ejection of the loader involves disruption of the ATP-dependent match in symmetry. The structures explain how synergy among the loader, the clamp, and DNA can trigger ATP hydrolysis and release of the closed clamp on DNA.

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Year:  2011        PMID: 22194570      PMCID: PMC3281585          DOI: 10.1126/science.1211884

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  44 in total

1.  Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage.

Authors:  I Moarefi; D Jeruzalmi; J Turner; M O'Donnell; J Kuriyan
Journal:  J Mol Biol       Date:  2000-03-10       Impact factor: 5.469

2.  Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.

Authors:  D Jeruzalmi; O Yurieva; Y Zhao; M Young; J Stewart; M Hingorani; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  2001-08-24       Impact factor: 41.582

3.  Mapping the interaction of DNA with the Escherichia coli DNA polymerase clamp loader complex.

Authors:  Eric R Goedken; Steven L Kazmirski; Gregory D Bowman; Mike O'Donnell; John Kuriyan
Journal:  Nat Struct Mol Biol       Date:  2005-01-16       Impact factor: 15.369

4.  Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras.

Authors:  M R Ahmadian; P Stege; K Scheffzek; A Wittinghofer
Journal:  Nat Struct Biol       Date:  1997-09

5.  Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria.

Authors:  J P Abrahams; A G Leslie; R Lutter; J E Walker
Journal:  Nature       Date:  1994-08-25       Impact factor: 49.962

6.  The structure of T. aquaticus DNA polymerase III is distinct from eukaryotic replicative DNA polymerases.

Authors:  Scott Bailey; Richard A Wing; Thomas A Steitz
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

7.  Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine.

Authors:  Aaron Johnson; Mike O'Donnell
Journal:  J Biol Chem       Date:  2003-02-10       Impact factor: 5.157

8.  Analysis of the role of PCNA-DNA contacts during clamp loading.

Authors:  Randall McNally; Gregory D Bowman; Eric R Goedken; Mike O'Donnell; John Kuriyan
Journal:  BMC Struct Biol       Date:  2010-01-30

9.  Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex.

Authors:  Gregory D Bowman; Mike O'Donnell; John Kuriyan
Journal:  Nature       Date:  2004-06-17       Impact factor: 49.962

10.  The structure of a ring-opened proliferating cell nuclear antigen-replication factor C complex revealed by fluorescence energy transfer.

Authors:  Zhihao Zhuang; Bonita L Yoder; Peter M J Burgers; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

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  89 in total

1.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

2.  The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA.

Authors:  Jaclyn N Hayner; Lauren G Douma; Linda B Bloom
Journal:  Nucleic Acids Res       Date:  2014-08-26       Impact factor: 16.971

3.  Bacterial and Eukaryotic Replisome Machines.

Authors:  Nina Yao; Mike O'Donnell
Journal:  JSM Biochem Mol Biol       Date:  2016-05-30

4.  Mechanism of formation of a toroid around DNA by the mismatch sensor protein.

Authors:  Shivlee Nirwal; Dhananjaya S Kulkarni; Amit Sharma; Desirazu N Rao; Deepak T Nair
Journal:  Nucleic Acids Res       Date:  2018-01-09       Impact factor: 16.971

5.  Kinetic analysis of PCNA clamp binding and release in the clamp loading reaction catalyzed by Saccharomyces cerevisiae replication factor C.

Authors:  Melissa R Marzahn; Jaclyn N Hayner; Jennifer A Meyer; Linda B Bloom
Journal:  Biochim Biophys Acta       Date:  2014-10-23

6.  Structure and mechanism of the ATPase that powers viral genome packaging.

Authors:  Brendan J Hilbert; Janelle A Hayes; Nicholas P Stone; Caroline M Duffy; Banumathi Sankaran; Brian A Kelch
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

Review 7.  A structural view of bacterial DNA replication.

Authors:  Aaron J Oakley
Journal:  Protein Sci       Date:  2019-04-17       Impact factor: 6.725

8.  Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps.

Authors:  Senthil K Perumal; Xiaojun Xu; Chunli Yan; Ivaylo Ivanov; Stephen J Benkovic
Journal:  J Mol Biol       Date:  2019-04-30       Impact factor: 5.469

9.  Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions.

Authors:  Wonbae Lee; John P Gillies; Davis Jose; Brett A Israels; Peter H von Hippel; Andrew H Marcus
Journal:  Nucleic Acids Res       Date:  2016-09-30       Impact factor: 16.971

10.  Impact of individual proliferating cell nuclear antigen-DNA contacts on clamp loading and function on DNA.

Authors:  Yayan Zhou; Manju M Hingorani
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

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