Literature DB >> 22184115

Essential role of ARID2 protein-containing SWI/SNF complex in tissue-specific gene expression.

Fuhua Xu1, Stephen Flowers, Elizabeth Moran.   

Abstract

Unfolding of the gene expression program that converts precursor cells to their terminally differentiated counterparts is critically dependent on the nucleosome-remodeling activity of the mammalian SWI/SNF complex. The complex can be powered by either of two alternative ATPases, BRM or BRG1. BRG1 is critical for development and the activation of tissue specific genes and is found in two major stable configurations. The complex of BRG1-associated factors termed BAF is the originally characterized form of mammalian SWI/SNF. A more recently recognized configuration shares many of the same subunits but is termed PBAF in recognition of a unique subunit, the polybromo protein (PBRM1). Two other unique subunits, BRD7 and ARID2, are also diagnostic of PBAF. PBAF plays an essential role in development, apparent from the embryonic lethality of Pbmr1-null mice, but very little is known about the role of PBAF, or its signature subunits, in tissue-specific gene expression in individual differentiation programs. Osteoblast differentiation is an attractive model for tissue-specific gene expression because the process is highly regulated and remains tightly synchronized over a period of several weeks. This model was used here, with a stable shRNA-mediated depletion approach, to examine the role of the signature PBAF subunit, ARID2, during differentiation. This analysis identifies a critical role for ARID2-containing complexes in promoting osteoblast differentiation and supports a view that the PBAF subset of SWI/SNF contributes importantly to maintaining cellular identity and activating tissue-specific gene expression.

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Year:  2011        PMID: 22184115      PMCID: PMC3281626          DOI: 10.1074/jbc.M111.279968

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  53 in total

1.  Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes.

Authors:  Tian H Chi; Mimi Wan; Keji Zhao; Ichiro Taniuchi; Lei Chen; Dan R Littman; Gerald R Crabtree
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  Gene array analysis of osteoblast differentiation.

Authors:  G R Beck; B Zerler; E Moran
Journal:  Cell Growth Differ       Date:  2001-02

3.  A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes.

Authors:  S Bultman; T Gebuhr; D Yee; C La Mantia; J Nicholson; A Gilliam; F Randazzo; D Metzger; P Chambon; G Crabtree; T Magnuson
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

4.  Dentin matrix protein 1 is predominantly expressed in chicken and rat osteocytes but not in osteoblasts.

Authors:  S Toyosawa; S Shintani; T Fujiwara; T Ooshima; A Sato; N Ijuhin; T Komori
Journal:  J Bone Miner Res       Date:  2001-11       Impact factor: 6.741

5.  Inactivating mutations of the chromatin remodeling gene ARID2 in hepatocellular carcinoma.

Authors:  Meng Li; Hong Zhao; Xiaosong Zhang; Laura D Wood; Robert A Anders; Michael A Choti; Timothy M Pawlik; Hubert D Daniel; Rajesh Kannangai; G Johan A Offerhaus; Victor E Velculescu; Linfang Wang; Shibin Zhou; Bert Vogelstein; Ralph H Hruban; Nick Papadopoulos; Jianqiang Cai; Michael S Torbenson; Kenneth W Kinzler
Journal:  Nat Genet       Date:  2011-08-07       Impact factor: 38.330

6.  Tissue-specific gene targeting by the multiprotein mammalian DREAM complex.

Authors:  Stephen Flowers; George R Beck; Elizabeth Moran
Journal:  J Biol Chem       Date:  2011-06-17       Impact factor: 5.157

7.  Expression of p270 (ARID1A), a component of human SWI/SNF complexes, in human tumors.

Authors:  Xiaomei Wang; Norman G Nagl; Stephen Flowers; Daniel Zweitzig; Peter B Dallas; Elizabeth Moran
Journal:  Int J Cancer       Date:  2004-11-20       Impact factor: 7.396

8.  Largest subunits of the human SWI/SNF chromatin-remodeling complex promote transcriptional activation by steroid hormone receptors.

Authors:  Hiroko Inoue; Takako Furukawa; Stavros Giannakopoulos; Sharleen Zhou; David S King; Naoko Tanese
Journal:  J Biol Chem       Date:  2002-08-27       Impact factor: 5.157

9.  Histone deacetylase 3 interacts with runx2 to repress the osteocalcin promoter and regulate osteoblast differentiation.

Authors:  Tania M Schroeder; Rachel A Kahler; Xiaodong Li; Jennifer J Westendorf
Journal:  J Biol Chem       Date:  2004-08-02       Impact factor: 5.157

10.  Dentin matrix protein 1, a target molecule for Cbfa1 in bone, is a unique bone marker gene.

Authors:  Jian Q Fen; Jianghong Zhang; Sarah L Dallas; Yongbo Lu; Shuo Chen; Xiaoyu Tan; Michael Owen; Stephen E Harris; Mary MacDougall
Journal:  J Bone Miner Res       Date:  2002-10       Impact factor: 6.741

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  29 in total

1.  Identifying candidate oocyte reprogramming factors using cross-species global transcriptional analysis.

Authors:  Jason P Awe; James A Byrne
Journal:  Cell Reprogram       Date:  2013-03-04       Impact factor: 1.987

Review 2.  ATP-dependent chromatin remodeling during mammalian development.

Authors:  Swetansu K Hota; Benoit G Bruneau
Journal:  Development       Date:  2016-08-15       Impact factor: 6.868

Review 3.  COMPASS and SWI/SNF complexes in development and disease.

Authors:  Bercin K Cenik; Ali Shilatifard
Journal:  Nat Rev Genet       Date:  2020-09-21       Impact factor: 53.242

4.  Long Noncoding RNA Arid2-IR Is a Novel Therapeutic Target for Renal Inflammation.

Authors:  Qin Zhou; Xiao R Huang; Jianwen Yu; Xueqing Yu; Hui Y Lan
Journal:  Mol Ther       Date:  2015-03-06       Impact factor: 11.454

Review 5.  Unwinding chromatin at the right places: how BAF is targeted to specific genomic locations during development.

Authors:  Patric J Ho; Sarah M Lloyd; Xiaomin Bao
Journal:  Development       Date:  2019-09-30       Impact factor: 6.868

6.  Heterozygosity for ARID2 loss-of-function mutations in individuals with a Coffin-Siris syndrome-like phenotype.

Authors:  Nuria C Bramswig; O Caluseriu; H-J Lüdecke; F V Bolduc; N C L Noel; T Wieland; H M Surowy; H-J Christen; H Engels; T M Strom; D Wieczorek
Journal:  Hum Genet       Date:  2017-01-25       Impact factor: 4.132

7.  Coactivator-Dependent Oscillation of Chromatin Accessibility Dictates Circadian Gene Amplitude via REV-ERB Loading.

Authors:  Brian York; Bert W O'Malley; Bokai Zhu; Leah A Gates; Erin Stashi; Subhamoy Dasgupta; Naomi Gonzales; Adam Dean; Clifford C Dacso
Journal:  Mol Cell       Date:  2015-11-21       Impact factor: 17.970

8.  Cooperative activation of tissue-specific genes by pRB and E2F1.

Authors:  Stephen Flowers; Fuhua Xu; Elizabeth Moran
Journal:  Cancer Res       Date:  2013-01-22       Impact factor: 12.701

9.  Mutations in ARID2 are associated with intellectual disabilities.

Authors:  Linshan Shang; Megan T Cho; Kyle Retterer; Leandra Folk; Jennifer Humberson; Luis Rohena; Alpa Sidhu; Sheila Saliganan; Alejandro Iglesias; Patrik Vitazka; Jane Juusola; Anne H O'Donnell-Luria; Yufeng Shen; Wendy K Chung
Journal:  Neurogenetics       Date:  2015-08-04       Impact factor: 2.660

Review 10.  SWI/SNF chromatin remodeling enzymes in melanocyte differentiation and melanoma.

Authors:  A Mehrotra; G Mehta; S Aras; A Trivedi; I L de la Serna
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2014       Impact factor: 1.807

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