Literature DB >> 22172915

Radical SAM enzymes in the biosynthesis of sugar-containing natural products.

Mark W Ruszczycky1, Yasushi Ogasawara, Hung-Wen Liu.   

Abstract

Carbohydrates play a key role in the biological activity of numerous natural products. In many instances their biosynthesis requires radical mediated rearrangements, some of which are catalyzed by radical SAM enzymes. BtrN is one such enzyme responsible for the dehydrogenation of a secondary alcohol in the biosynthesis of 2-deoxystreptamine. DesII is another example that catalyzes a deamination reaction necessary for the net C4 deoxygenation of a glucose derivative en route to desosamine formation. BtrN and DesII represent the two most extensively characterized radical SAM enzymes involved in carbohydrate biosynthesis. In this review, we summarize the biosynthetic roles of these two enzymes, their mechanisms of catalysis, the questions that have arisen during these investigations and the insight they can offer for furthering our understanding of radical SAM enzymology. This article is part of a Special Issue entitled: Radical SAM enzymes and Radical Enzymology.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22172915      PMCID: PMC3438383          DOI: 10.1016/j.bbapap.2011.11.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  95 in total

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2.  Inhibition of infectivity of human immunodeficiency virus by oxetanocin.

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3.  The mechanism of action of ethanolamine deaminase. I. Studies with isotopic hydrogen and oxygen.

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Journal:  Arch Biochem Biophys       Date:  2005-01-01       Impact factor: 4.013

5.  Gene cluster in Micromonospora echinospora ATCC15835 for the biosynthesis of the gentamicin C complex.

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Journal:  J Antibiot (Tokyo)       Date:  2004-07       Impact factor: 2.649

6.  A locus that contributes to colonization of the intestinal tract by Bacteroides thetaiotaomicron contains a single regulatory gene (chuR) that links two polysaccharide utilization pathways.

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Journal:  J Bacteriol       Date:  1992-11       Impact factor: 3.490

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Review 8.  Unusual dehydrations in anaerobic bacteria: considering ketyls (radical anions) as reactive intermediates in enzymatic reactions.

Authors:  W Buckel
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9.  Heterologous production and detection of recombinant directing 2-deoxystreptamine (DOS) in the non-aminoglycoside-producing host Streptomyces venezuelae YJ003.

Authors:  Nagendra Prasad Kurumbang; Tae-Jin Oh; Kwangkyoung Liou; Jae Kyung Sohng
Journal:  J Microbiol Biotechnol       Date:  2008-05       Impact factor: 2.351

10.  In vitro characterization of AtsB, a radical SAM formylglycine-generating enzyme that contains three [4Fe-4S] clusters.

Authors:  Tyler L Grove; Kyung-Hoon Lee; Jennifer St Clair; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2008-06-18       Impact factor: 3.162

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  14 in total

1.  C3'-Deoxygenation of Paromamine Catalyzed by a Radical S-Adenosylmethionine Enzyme: Characterization of the Enzyme AprD4 and Its Reductase Partner AprD3.

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Journal:  Angew Chem Int Ed Engl       Date:  2016-02-16       Impact factor: 15.336

2.  Mechanistic Enzymology of the Radical SAM Enzyme DesII.

Authors:  Mark W Ruszczycky; Hung-Wen Liu
Journal:  Isr J Chem       Date:  2015-02-20       Impact factor: 3.333

Review 3.  Radical S-adenosylmethionine enzymes.

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Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

4.  Mechanistic Investigation of the Radical S-Adenosyl-L-methionine Enzyme DesII Using Fluorinated Analogues.

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Journal:  J Am Chem Soc       Date:  2015-04-02       Impact factor: 15.419

5.  Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.

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Journal:  Nat Chem       Date:  2016-04-04       Impact factor: 24.427

6.  Theory and Application of the Relationship Between Steady-State Isotope Effects on Enzyme Intermediate Concentrations and Net Rate Constants.

Authors:  Mark W Ruszczycky; Hung-Wen Liu
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7.  Does Viperin Function as a Radical S-Adenosyl-l-methionine-dependent Enzyme in Regulating Farnesylpyrophosphate Synthase Expression and Activity?

Authors:  Caitlyn Makins; Soumi Ghosh; Gabriel D Román-Meléndez; Paige A Malec; Robert T Kennedy; E Neil G Marsh
Journal:  J Biol Chem       Date:  2016-11-10       Impact factor: 5.157

8.  Mechanistic studies of the radical S-adenosylmethionine enzyme DesII with TDP-D-fucose.

Authors:  Yeonjin Ko; Mark W Ruszczycky; Sei-Hyun Choi; Hung-wen Liu
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9.  X-ray analysis of butirosin biosynthetic enzyme BtrN redefines structural motifs for AdoMet radical chemistry.

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Review 10.  Viperin: An ancient radical SAM enzyme finds its place in modern cellular metabolism and innate immunity.

Authors:  Soumi Ghosh; E Neil G Marsh
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