Literature DB >> 32546482

Viperin: An ancient radical SAM enzyme finds its place in modern cellular metabolism and innate immunity.

Soumi Ghosh1, E Neil G Marsh2,3.   

Abstract

Viperin plays an important and multifaceted role in the innate immune response to viral infection. Viperin is also notable as one of very few radical SAM-dependent enzymes present in higher animals; however, the enzyme appears broadly conserved across all kingdoms of life, which suggests that it represents an ancient defense mechanism against viral infections. Although viperin was discovered some 20 years ago, only recently was the enzyme's structure determined and its catalytic activity elucidated. The enzyme converts CTP to 3'-deoxy-3',4'-didehydro-CTP, which functions as novel chain-terminating antiviral nucleotide when misincorporated by viral RNA-dependent RNA polymerases. Moreover, in higher animals, viperin interacts with numerous other host and viral proteins, and it is apparent that this complex network of interactions constitutes another important aspect of the protein's antiviral activity. An emerging theme is that viperin appears to facilitate ubiquitin-dependent proteasomal degradation of some of the proteins it interacts with. Viperin-targeted protein degradation contributes to the antiviral response either by down-regulating various metabolic pathways important for viral replication or by directly targeting viral proteins for degradation. Here, we review recent advances in our understanding of the structure and catalytic activity of viperin, together with studies investigating the interactions between viperin and its target proteins. These studies have provided detailed insights into the biochemical processes underpinning this unusual enzyme's wide-ranging antiviral activity. We also highlight recent intriguing reports that implicate a broader role for viperin in regulating nonpathological cellular processes, including thermogenesis and protein secretion.
© 2020 Ghosh and Marsh.

Entities:  

Keywords:  3′,4′-didehydro-3′-deoxy-CTP; RNA-dependent RNA polymerase (RdRp); antiviral agent; enzyme mechanism; innate immune signaling; innate immunity; lipid metabolism; protein degradation; protein secretion; protein ubiquitination; radical SAM enzyme; thermogenesis; ubiquitylation (ubiquitination); viperin; viral replication; virus

Year:  2020        PMID: 32546482      PMCID: PMC7450102          DOI: 10.1074/jbc.REV120.012784

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  107 in total

Review 1.  The Radical SAM Superfamily.

Authors:  Perry A Frey; Adrian D Hegeman; Frank J Ruzicka
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Jan-Feb       Impact factor: 8.250

2.  Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods.

Authors:  H J Sofia; G Chen; B G Hetzler; J F Reyes-Spindola; N E Miller
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

Review 3.  The role of viperin in the innate antiviral response.

Authors:  Karla J Helbig; Michael R Beard
Journal:  J Mol Biol       Date:  2013-10-22       Impact factor: 5.469

4.  Viperin inhibits classical swine fever virus replication by interacting with viral nonstructural 5A protein.

Authors:  Chunmei Xu; Luping Feng; Peige Chen; Anqi Li; Shuang Guo; Xianqin Jiao; Chengyu Zhang; Yunze Zhao; Xiangyang Jin; Kai Zhong; Yujie Guo; Heshui Zhu; Liqiang Han; Guoyu Yang; Heping Li; Yueying Wang
Journal:  J Med Virol       Date:  2019-09-26       Impact factor: 2.327

Review 5.  Adenosylcobalamin enzymes: theory and experiment begin to converge.

Authors:  E Neil G Marsh; Gabriel D Román Meléndez
Journal:  Biochim Biophys Acta       Date:  2012-04-03

6.  Antiviral protein Viperin promotes Toll-like receptor 7- and Toll-like receptor 9-mediated type I interferon production in plasmacytoid dendritic cells.

Authors:  Tatsuya Saitoh; Takashi Satoh; Naoki Yamamoto; Satoshi Uematsu; Osamu Takeuchi; Taro Kawai; Shizuo Akira
Journal:  Immunity       Date:  2011-03-25       Impact factor: 31.745

7.  Travels with carbon-centered radicals. 5'-deoxyadenosine and 5'-deoxyadenosine-5'-yl in radical enzymology.

Authors:  Perry A Frey
Journal:  Acc Chem Res       Date:  2013-12-05       Impact factor: 22.384

8.  Structural Basis of the Substrate Selectivity of Viperin.

Authors:  Michael K Fenwick; Dan Su; Min Dong; Hening Lin; Steven E Ealick
Journal:  Biochemistry       Date:  2020-01-16       Impact factor: 3.162

9.  Viperin is induced following dengue virus type-2 (DENV-2) infection and has anti-viral actions requiring the C-terminal end of viperin.

Authors:  Karla J Helbig; Jillian M Carr; Julie K Calvert; Satiya Wati; Jennifer N Clarke; Nicholas S Eyre; Sumudu K Narayana; Guillaume N Fiches; Erin M McCartney; Michael R Beard
Journal:  PLoS Negl Trop Dis       Date:  2013-04-18

10.  Porcine Viperin protein inhibits the replication of classical swine fever virus (CSFV) in vitro.

Authors:  Wenliang Li; Li Mao; Yongguo Cao; Bin Zhou; Leilei Yang; Linxiao Han; Fei Hao; Tao Lin; Wenwen Zhang; Jieyuan Jiang
Journal:  Virol J       Date:  2017-10-23       Impact factor: 4.099

View more
  17 in total

1.  Viperin-taken down with a pinch of salt.

Authors:  Soumi Ghosh; E Neil G Marsh
Journal:  EMBO Rep       Date:  2021-11-19       Impact factor: 8.807

Review 2.  Iron-sulfur clusters as inhibitors and catalysts of viral replication.

Authors:  Kourosh Honarmand Ebrahimi; Simone Ciofi-Baffoni; Peter-Leon Hagedoorn; Yvain Nicolet; Nick E Le Brun; Wilfred R Hagen; Fraser A Armstrong
Journal:  Nat Chem       Date:  2022-02-14       Impact factor: 24.274

3.  Viperin triggers ribosome collision-dependent translation inhibition to restrict viral replication.

Authors:  Jack Chun-Chieh Hsu; Maudry Laurent-Rolle; Joanna B Pawlak; Hongjie Xia; Amit Kunte; Jia Shee Hee; Jaechul Lim; Lawrence D Harris; James M Wood; Gary B Evans; Pei-Yong Shi; Tyler L Grove; Steven C Almo; Peter Cresswell
Journal:  Mol Cell       Date:  2022-03-21       Impact factor: 19.328

Review 4.  Innate metabolic responses against viral infections.

Authors:  Clovis S Palmer
Journal:  Nat Metab       Date:  2022-10-20

5.  Viperin interacts with PEX19 to mediate peroxisomal augmentation of the innate antiviral response.

Authors:  Onruedee Khantisitthiporn; Byron Shue; Nicholas S Eyre; Colt W Nash; Lynne Turnbull; Cynthia B Whitchurch; Kylie H Van der Hoek; Karla J Helbig; Michael R Beard
Journal:  Life Sci Alliance       Date:  2021-06-09

Review 6.  All About the RNA: Interferon-Stimulated Genes That Interfere With Viral RNA Processes.

Authors:  Emily Yang; Melody M H Li
Journal:  Front Immunol       Date:  2020-12-09       Impact factor: 7.561

Review 7.  Evolutionary conflicts and adverse effects of antiviral factors.

Authors:  Daniel Sauter; Frank Kirchhoff
Journal:  Elife       Date:  2021-01-15       Impact factor: 8.140

8.  Structural Insight into the Substrate Scope of Viperin and Viperin-like Enzymes from Three Domains of Life.

Authors:  Jake C Lachowicz; Anthony S Gizzi; Steven C Almo; Tyler L Grove
Journal:  Biochemistry       Date:  2021-06-22       Impact factor: 3.162

Review 9.  Membrane-Associated Flavivirus Replication Complex-Its Organization and Regulation.

Authors:  Eiji Morita; Youichi Suzuki
Journal:  Viruses       Date:  2021-06-03       Impact factor: 5.048

10.  Interferon-stimulated gene products as regulators of central carbon metabolism.

Authors:  Kourosh H Ebrahimi; Javier Gilbert-Jaramillo; William S James; James S O McCullagh
Journal:  FEBS J       Date:  2020-12-01       Impact factor: 5.622

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.