Literature DB >> 22167672

NMR studies of large protein systems.

Shiou-Ru Tzeng1, Ming-Tao Pai, Charalampos G Kalodimos.   

Abstract

Over the recent years, there has been increased interest in applying NMR spectroscopy for the characterization of proteins and protein complexes of large molecular weight. The combination of multidimensional NMR, novel pulse sequences allowing for the selection of slowly relaxing coherence pathways, and the development of a range of labeling techniques has enabled high-resolution NMR analyses of supramolecular systems of even megadalton size. Here, we describe how NMR can be used to obtain structural information in large systems by using as an example the recent structure determination of SecA ATPase (204 kDa) in complex with a signal peptide.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22167672      PMCID: PMC3427617          DOI: 10.1007/978-1-61779-480-3_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

Review 1.  Exchange-transferred NOE spectroscopy and bound ligand structure determination.

Authors:  Carol Beth Post
Journal:  Curr Opin Struct Biol       Date:  2003-10       Impact factor: 6.809

2.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

3.  Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  The HADDOCK web server for data-driven biomolecular docking.

Authors:  Sjoerd J de Vries; Marc van Dijk; Alexandre M J J Bonvin
Journal:  Nat Protoc       Date:  2010-04-15       Impact factor: 13.491

5.  Quantitative dynamics and binding studies of the 20S proteasome by NMR.

Authors:  Remco Sprangers; Lewis E Kay
Journal:  Nature       Date:  2007-01-21       Impact factor: 49.962

6.  Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data.

Authors:  J L Battiste; G Wagner
Journal:  Biochemistry       Date:  2000-05-09       Impact factor: 3.162

7.  A robust and cost-effective method for the production of Val, Leu, Ile (delta 1) methyl-protonated 15N-, 13C-, 2H-labeled proteins.

Authors:  N K Goto; K H Gardner; G A Mueller; R C Willis; L E Kay
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

8.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

9.  Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR.

Authors:  Chun Tang; Charles D Schwieters; G Marius Clore
Journal:  Nature       Date:  2007-10-25       Impact factor: 49.962

10.  Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.

Authors:  Vitali Tugarinov; Peter M Hwang; Jason E Ollerenshaw; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

View more
  19 in total

1.  The role of slow and fast protein motions in allosteric interactions.

Authors:  Shiou-Ru Tzeng; Charalampos G Kalodimos
Journal:  Biophys Rev       Date:  2015-04-25

2.  MT1-MMP Binds Membranes by Opposite Tips of Its β Propeller to Position It for Pericellular Proteolysis.

Authors:  Tara C Marcink; Jayce A Simoncic; Bo An; Anna M Knapinska; Yan G Fulcher; Narahari Akkaladevi; Gregg B Fields; Steven R Van Doren
Journal:  Structure       Date:  2018-11-21       Impact factor: 5.006

Review 3.  Nuclear magnetic resonance spectroscopy of the circadian clock of cyanobacteria.

Authors:  Yong-Gang Chang; Roger Tseng; Nai-Wei Kuo; Andy LiWang
Journal:  Integr Comp Biol       Date:  2013-05-10       Impact factor: 3.326

4.  Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids.

Authors:  Andrew Proudfoot; Andreas O Frank; Fiorella Ruggiu; Mulugeta Mamo; Andreas Lingel
Journal:  J Biomol NMR       Date:  2016-04-29       Impact factor: 2.835

5.  NMR mapping of protein conformational landscapes using coordinated behavior of chemical shifts upon ligand binding.

Authors:  Alessandro Cembran; Jonggul Kim; Jiali Gao; Gianluigi Veglia
Journal:  Phys Chem Chem Phys       Date:  2014-03-07       Impact factor: 3.676

6.  Structural basis for client recognition and activity of Hsp40 chaperones.

Authors:  Yajun Jiang; Paolo Rossi; Charalampos G Kalodimos
Journal:  Science       Date:  2019-09-20       Impact factor: 47.728

7.  Improving yields of deuterated, methyl labeled protein by growing in H2O.

Authors:  Evan S O'Brien; Danny W Lin; Brian Fuglestad; Matthew A Stetz; Travis Gosse; Cecilia Tommos; A Joshua Wand
Journal:  J Biomol NMR       Date:  2018-08-02       Impact factor: 2.835

8.  Change in the Molecular Dimension of a RAGE-Ligand Complex Triggers RAGE Signaling.

Authors:  Jing Xue; Michaele Manigrasso; Matteo Scalabrin; Vivek Rai; Sergey Reverdatto; David S Burz; Daniele Fabris; Ann Marie Schmidt; Alexander Shekhtman
Journal:  Structure       Date:  2016-08-11       Impact factor: 5.006

9.  Exploiting E. coli auxotrophs for leucine, valine, and threonine specific methyl labeling of large proteins for NMR applications.

Authors:  Yoan R Monneau; Yojiro Ishida; Paolo Rossi; Tomohide Saio; Shiou-Ru Tzeng; Masayori Inouye; Charalampos G Kalodimos
Journal:  J Biomol NMR       Date:  2016-06-02       Impact factor: 2.835

10.  Structure-Based Assignment of Ile, Leu, and Val Methyl Groups in the Active and Inactive Forms of the Mitogen-Activated Protein Kinase Extracellular Signal-Regulated Kinase 2.

Authors:  Yao Xiao; Lisa R Warner; Michael P Latham; Natalie G Ahn; Arthur Pardi
Journal:  Biochemistry       Date:  2015-07-13       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.