Literature DB >> 14568612

Exchange-transferred NOE spectroscopy and bound ligand structure determination.

Carol Beth Post1.   

Abstract

The exchange-transferred nuclear Overhauser effect of NMR spectroscopy provides information on small-molecule ligands in association with high-molecular-weight proteins or nucleic acids, or with biomolecular assemblies such as membranes. The method has proved particularly useful for the structural analysis of proton-rich, flexible ligands and for screening mixtures of ligands for binding activity. Recent analysis has established the accuracy of bound peptide structures determined from transferred nuclear Overhauser effect data and that intermolecular spin diffusion effects do not diminish the reliability of the structural result. New applications of the method involve systems of greater complexity, such as membrane-bound receptors and ribosomes. In addition, new experiments have been developed that exploit the transfer of other types of NMR signal (saturation, cross-correlation, dipolar coupling) to obtain structural information.

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Year:  2003        PMID: 14568612     DOI: 10.1016/j.sbi.2003.09.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  35 in total

1.  NMR studies of large protein systems.

Authors:  Shiou-Ru Tzeng; Ming-Tao Pai; Charalampos G Kalodimos
Journal:  Methods Mol Biol       Date:  2012

2.  Enhancement of bound-state residual dipolar couplings: conformational analysis of lactose bound to Galectin-3.

Authors:  Tiandi Zhuang; Hakon Leffler; James H Prestegard
Journal:  Protein Sci       Date:  2006-06-02       Impact factor: 6.725

3.  Nuclear magnetic resonance structural characterization of substrates bound to the alpha-2,6-sialyltransferase, ST6Gal-I.

Authors:  Shan Liu; Lu Meng; Kelley W Moremen; James H Prestegard
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

Review 4.  A career pathway in protein folding: from model peptides to postreductionist protein science.

Authors:  Lila M Gierasch
Journal:  Protein Sci       Date:  2011-04-04       Impact factor: 6.725

5.  Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy.

Authors:  Nicolas L Fawzi; Jinfa Ying; Dennis A Torchia; G Marius Clore
Journal:  Nat Protoc       Date:  2012-07-19       Impact factor: 13.491

6.  A peptide from the beta-strand region of CD2 protein that inhibits cell adhesion and suppresses arthritis in a mouse model.

Authors:  Seetharama D Satyanarayanajois; Barlas Büyüktimkin; Ameya Gokhale; Sharon Ronald; Teruna J Siahaan; John R Latendresse
Journal:  Chem Biol Drug Des       Date:  2010-06-23       Impact factor: 2.817

7.  NMR structure of pardaxin, a pore-forming antimicrobial peptide, in lipopolysaccharide micelles: mechanism of outer membrane permeabilization.

Authors:  Anirban Bhunia; Prerna N Domadia; Jaume Torres; Kevin J Hallock; Ayyalusamy Ramamoorthy; Surajit Bhattacharjya
Journal:  J Biol Chem       Date:  2009-12-03       Impact factor: 5.157

Review 8.  High-field solution NMR spectroscopy as a tool for assessing protein interactions with small molecule ligands.

Authors:  Andria L Skinner; Jennifer S Laurence
Journal:  J Pharm Sci       Date:  2008-11       Impact factor: 3.534

9.  Role of Aromatic Amino Acids in Lipopolysaccharide and Membrane Interactions of Antimicrobial Peptides for Use in Plant Disease Control.

Authors:  Aritreyee Datta; Dipita Bhattacharyya; Shalini Singh; Anirban Ghosh; Artur Schmidtchen; Martin Malmsten; Anirban Bhunia
Journal:  J Biol Chem       Date:  2016-05-02       Impact factor: 5.157

10.  One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements.

Authors:  Marco Tonelli; Larry R Masterson; Gabriel Cornilescu; John L Markley; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

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