Literature DB >> 22123768

Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide.

Philippe Oger1, Tatyana G Sokolova, Darya A Kozhevnikova, Nikolai A Chernyh, Douglas H Bartlett, Elizaveta A Bonch-Osmolovskaya, Alexander V Lebedinsky.   

Abstract

Analysis of the complete genome of Thermococcus sp. strain AM4, which was the first lithotrophic Thermococcales isolate described and the first archaeal isolate to exhibit a capacity for hydrogenogenic carboxydotrophy, reveals a proximity with Thermococcus gammatolerans, corresponding to close but distinct species that differ significantly in their lithotrophic capacities.

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Year:  2011        PMID： 22123768      PMCID： PMC3232831          DOI： 10.1128/JB.06259-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Identification of a novel class of membrane-bound [NiFe]-hydrogenases in Thermococcus onnurineus NA1 by in silico analysis.

Authors:  Jae Kyu Lim; Sung Gyun Kang; Alexander V Lebedinsky; Jung-Hyun Lee; Hyun Sook Lee
Journal:  Appl Environ Microbiol       Date:  2010-07-23       Impact factor: 4.792

2.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

3.  Notes on the characterization of prokaryote strains for taxonomic purposes.

Authors:  B J Tindall; R Rosselló-Móra; H-J Busse; W Ludwig; P Kämpfer
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-21       Impact factor: 2.747

4.  Formate-driven growth coupled with H(2) production.

Authors:  Yun Jae Kim; Hyun Sook Lee; Eun Sook Kim; Seung Seob Bae; Jae Kyu Lim; Rie Matsumi; Alexander V Lebedinsky; Tatyana G Sokolova; Darya A Kozhevnikova; Sun-Shin Cha; Sang-Jin Kim; Kae Kyoung Kwon; Tadayuki Imanaka; Haruyuki Atomi; Elizaveta A Bonch-Osmolovskaya; Jung-Hyun Lee; Sung Gyun Kang
Journal:  Nature       Date:  2010-09-16       Impact factor: 49.962

5.  Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP.

Authors:  Pauline Vannier; Viggo Thor Marteinsson; Olafur Hedinn Fridjonsson; Philippe Oger; Mohamed Jebbar
Journal:  J Bacteriol       Date:  2011-01-07       Impact factor: 3.490

Review 6.  Diversity and ecophysiological features of thermophilic carboxydotrophic anaerobes.

Authors:  Tatyana G Sokolova; Anne-Meint Henstra; Jan Sipma; Sofiya N Parshina; Alfons J M Stams; Alexander V Lebedinsky
Journal:  FEMS Microbiol Ecol       Date:  2009-05       Impact factor: 4.194

7.  The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism.

Authors:  Hyun Sook Lee; Sung Gyun Kang; Seung Seob Bae; Jae Kyu Lim; Yona Cho; Yun Jae Kim; Jeong Ho Jeon; Sun-Shin Cha; Kae Kyoung Kwon; Hyung-Tae Kim; Cheol-Joo Park; Hee-Wook Lee; Seung Il Kim; Jongsik Chun; Rita R Colwell; Sang-Jin Kim; Jung-Hyun Lee
Journal:  J Bacteriol       Date:  2008-09-12       Impact factor: 3.490

8.  Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation.

Authors:  Edmond Jolivet; Stéphane L'Haridon; Erwan Corre; Patrick Forterre; Daniel Prieur
Journal:  Int J Syst Evol Microbiol       Date:  2003-05       Impact factor: 2.747

9.  The first evidence of anaerobic CO oxidation coupled with H2 production by a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.

Authors:  Tatyana G Sokolova; Christian Jeanthon; Nadezhda A Kostrikina; Nikolai A Chernyh; Alexander V Lebedinsky; Erko Stackebrandt; Elizaveta A Bonch-Osmolovskaya
Journal:  Extremophiles       Date:  2004-05-26       Impact factor: 2.395

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  10 in total

Review 1.  Diversity of CRISPR systems in the euryarchaeal Pyrococcales.

Authors:  Cédric Norais; Annick Moisan; Christine Gaspin; Béatrice Clouet-d'Orval
Journal:  RNA Biol       Date:  2013-02-19       Impact factor: 4.652

2.  Anaerobic carboxydotrophy in sulfur-respiring haloarchaea from hypersaline lakes.

Authors:  Dimitry Y Sorokin; Alexander Y Merkel; Enzo Messina; Claudia Tugui; Martin Pabst; Peter N Golyshin; Michail M Yakimov
Journal:  ISME J       Date:  2022-02-07       Impact factor: 11.217

3.  Characterization of thermostable deblocking aminopeptidases of archaeon Thermococcus onnurineus NA1 by proteomic and biochemical approaches.

Authors:  Yeol Gyun Lee; Sun-Hee Leem; Young-Ho Chung; Seung Il Kim
Journal:  J Microbiol       Date:  2012-11-04       Impact factor: 3.422

4.  Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.

Authors:  Aldema Sas-Chen; Justin M Thomas; Donna Matzov; Masato Taoka; Kellie D Nance; Ronit Nir; Keri M Bryson; Ran Shachar; Geraldy L S Liman; Brett W Burkhart; Supuni Thalalla Gamage; Yuko Nobe; Chloe A Briney; Michaella J Levy; Ryan T Fuchs; G Brett Robb; Jesse Hartmann; Sunny Sharma; Qishan Lin; Laurence Florens; Michael P Washburn; Toshiaki Isobe; Thomas J Santangelo; Moran Shalev-Benami; Jordan L Meier; Schraga Schwartz
Journal:  Nature       Date:  2020-06-17       Impact factor: 49.962

5.  Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes.

Authors:  Matteo Cossu; Violette Da Cunha; Claire Toffano-Nioche; Patrick Forterre; Jacques Oberto
Journal:  Biochimie       Date:  2015-07-10       Impact factor: 4.079

6.  Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation.

Authors:  Natalia Guschinskaya; Romain Brunel; Maxime Tourte; Gina L Lipscomb; Michael W W Adams; Philippe Oger; Xavier Charpentier
Journal:  Sci Rep       Date:  2016-11-08       Impact factor: 4.379

7.  Proteomic Insights into Sulfur Metabolism in the Hydrogen-Producing Hyperthermophilic Archaeon Thermococcus onnurineus NA1.

Authors:  Yoon-Jung Moon; Joseph Kwon; Sung-Ho Yun; Hye Li Lim; Jonghyun Kim; Soo Jung Kim; Sung Gyun Kang; Jung-Hyun Lee; Seung Il Kim; Young-Ho Chung
Journal:  Int J Mol Sci       Date:  2015-04-23       Impact factor: 5.923

8.  Biogeography and evolution of Thermococcus isolates from hydrothermal vent systems of the Pacific.

Authors:  Mark T Price; Heather Fullerton; Craig L Moyer
Journal:  Front Microbiol       Date:  2015-09-24       Impact factor: 5.640

Review 9.  Life on the fringe: microbial adaptation to growth on carbon monoxide.

Authors:  Frank T Robb; Stephen M Techtmann
Journal:  F1000Res       Date:  2018-12-27

10.  Evolution of Thermophilic Microbial Communities from a Deep-Sea Hydrothermal Chimney under Electrolithoautotrophic Conditions with Nitrate.

Authors:  Guillaume Pillot; Oulfat Amin Ali; Sylvain Davidson; Laetitia Shintu; Yannick Combet-Blanc; Anne Godfroy; Patricia Bonin; Pierre-Pol Liebgott
Journal:  Microorganisms       Date:  2021-11-30
  10 in total

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