Literature DB >> 20656864

Identification of a novel class of membrane-bound [NiFe]-hydrogenases in Thermococcus onnurineus NA1 by in silico analysis.

Jae Kyu Lim1, Sung Gyun Kang, Alexander V Lebedinsky, Jung-Hyun Lee, Hyun Sook Lee.   

Abstract

In silico analysis of group 4 [NiFe]-hydrogenases from a hyperthermophilic archaeon, Thermococcus onnurineus NA1, revealed a novel tripartite gene cluster consisting of dehydrogenase-hydrogenase-cation/proton antiporter subunits, which may be classified as the new subgroup 4b of [NiFe]-hydrogenases-based on sequence motifs.

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Year:  2010        PMID： 20656864      PMCID： PMC2937479          DOI： 10.1128/AEM.00123-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  19 in total

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Authors:  P M Vignais; B Billoud; J Meyer
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2.  Characterization of a new thermophilic sulfate-reducing bacterium Thermodesulfovibrio yellowstonii, gen. nov. and sp. nov.: its phylogenetic relationship to Thermodesulfobacterium commune and their origins deep within the bacterial domain.

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Review 4.  Occurrence, classification, and biological function of hydrogenases: an overview.

Authors:  Paulette M Vignais; Bernard Billoud
Journal:  Chem Rev       Date:  2007-10       Impact factor: 60.622

5.  Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge.

Authors:  James W Voordeckers; Valentin Starovoytov; Costantino Vetriani
Journal:  Int J Syst Evol Microbiol       Date:  2005-03       Impact factor: 2.747

6.  Characterization of the region encoding the CO-induced hydrogenase of Rhodospirillum rubrum.

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Journal:  J Bacteriol       Date:  1996-11       Impact factor: 3.490

7.  A complete sequence of the T. tengcongensis genome.

Authors:  Qiyu Bao; Yuqing Tian; Wei Li; Zuyuan Xu; Zhenyu Xuan; Songnian Hu; Wei Dong; Jian Yang; Yanjiong Chen; Yanfen Xue; Yi Xu; Xiaoqin Lai; Li Huang; Xiuzhu Dong; Yanhe Ma; Lunjiang Ling; Huarong Tan; Runsheng Chen; Jian Wang; Jun Yu; Huanming Yang
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8.  An Escherichia coli hydrogenase-3-type hydrogenase in methanogenic archaea.

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Journal:  Eur J Biochem       Date:  1998-03-15

Review 9.  A third type of hydrogenase catalyzing H2 activation.

Authors:  Seigo Shima; Rudolf K Thauer
Journal:  Chem Rec       Date:  2007       Impact factor: 6.771

Review 10.  Microbial hydrogenases: primary structure, classification, signatures and phylogeny.

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Journal:  FEMS Microbiol Rev       Date:  1993-04       Impact factor: 16.408
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  22 in total

1.  A novel CO-responsive transcriptional regulator and enhanced H2 production by an engineered Thermococcus onnurineus NA1 strain.

Authors:  Min-Sik Kim; Ae Ran Choi; Seong Hyuk Lee; Hae-Chang Jung; Seung Seob Bae; Tae-Jun Yang; Jeong Ho Jeon; Jae Kyu Lim; Hwan Youn; Tae Wan Kim; Hyun Sook Lee; Sung Gyun Kang
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

2.  Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway.

Authors:  Marie Charlotte Schoelmerich; Volker Müller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-08       Impact factor: 11.205

Review 3.  Energy-converting hydrogenases: the link between H2 metabolism and energy conservation.

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Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

5.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide.

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6.  Proteome analyses of hydrogen-producing hyperthermophilic archaeon Thermococcus onnurineus NA1 in different one-carbon substrate culture conditions.

Authors:  Yoon-Jung Moon; Joseph Kwon; Sung-Ho Yun; Hye Li Lim; Min-Sik Kim; Sung Gyun Kang; Jung-Hyun Lee; Jong-Soon Choi; Seung Il Kim; Young-Ho Chung
Journal:  Mol Cell Proteomics       Date:  2012-01-09       Impact factor: 5.911

7.  Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea.

Authors:  Brett J Baker; Jimmy H Saw; Anders E Lind; Cassandre Sara Lazar; Kai-Uwe Hinrichs; Andreas P Teske; Thijs J G Ettema
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8.  Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.

Authors:  Alexander V Lebedinsky; Andrey V Mardanov; Ilya V Kublanov; Vadim M Gumerov; Alexey V Beletsky; Anna A Perevalova; Salima Kh Bidzhieva; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin; Nikolai V Ravin
Journal:  Extremophiles       Date:  2013-12-24       Impact factor: 2.395

9.  CO-dependent H2 production by genetically engineered Thermococcus onnurineus NA1.

Authors:  Min-Sik Kim; Seung Seob Bae; Yun Jae Kim; Tae Wan Kim; Jae Kyu Lim; Seong Hyuk Lee; Ae Ran Choi; Jeong Ho Jeon; Jung-Hyun Lee; Hyun Sook Lee; Sung Gyun Kang
Journal:  Appl Environ Microbiol       Date:  2013-01-18       Impact factor: 4.792

10.  Evidence for horizontal gene transfer of anaerobic carbon monoxide dehydrogenases.

Authors:  Stephen M Techtmann; Alexander V Lebedinsky; Albert S Colman; Tatyana G Sokolova; Tanja Woyke; Lynne Goodwin; Frank T Robb
Journal:  Front Microbiol       Date:  2012-04-17       Impact factor: 5.640
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