Literature DB >> 20844539

Formate-driven growth coupled with H(2) production.

Yun Jae Kim1, Hyun Sook Lee, Eun Sook Kim, Seung Seob Bae, Jae Kyu Lim, Rie Matsumi, Alexander V Lebedinsky, Tatyana G Sokolova, Darya A Kozhevnikova, Sun-Shin Cha, Sang-Jin Kim, Kae Kyoung Kwon, Tadayuki Imanaka, Haruyuki Atomi, Elizaveta A Bonch-Osmolovskaya, Jung-Hyun Lee, Sung Gyun Kang.   

Abstract

Although a common reaction in anaerobic environments, the conversion of formate and water to bicarbonate and H(2) (with a change in Gibbs free energy of ΔG° = +1.3 kJ mol(-1)) has not been considered energetic enough to support growth of microorganisms. Recently, experimental evidence for growth on formate was reported for syntrophic communities of Moorella sp. strain AMP and a hydrogen-consuming Methanothermobacter species and of Desulfovibrio sp. strain G11 and Methanobrevibacter arboriphilus strain AZ. The basis of the sustainable growth of the formate-users is explained by H(2) consumption by the methanogens, which lowers the H(2) partial pressure, thus making the pathway exergonic. However, it has not been shown that a single strain can grow on formate by catalysing its conversion to bicarbonate and H(2). Here we report that several hyperthermophilic archaea belonging to the Thermococcus genus are capable of formate-oxidizing, H(2)-producing growth. The actual ΔG values for the formate metabolism are calculated to range between -8 and -20 kJ mol(-1) under the physiological conditions where Thermococcus onnurineus strain NA1 are grown. Furthermore, we detected ATP synthesis in the presence of formate as a sole energy source. Gene expression profiling and disruption identified the gene cluster encoding formate hydrogen lyase, cation/proton antiporter and formate transporter, which were responsible for the growth of T. onnurineus NA1 on formate. This work shows formate-driven growth by a single microorganism with protons as the electron acceptor, and reports the biochemical basis of this ability.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20844539     DOI: 10.1038/nature09375

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  24 in total

Review 1.  Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and bacteria.

Authors:  J P Amend; E L Shock
Journal:  FEMS Microbiol Rev       Date:  2001-04       Impact factor: 16.408

2.  Evaluation of methods for the prediction of membrane spanning regions.

Authors:  S Möller; M D Croning; R Apweiler
Journal:  Bioinformatics       Date:  2001-07       Impact factor: 6.937

3.  Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli.

Authors:  M Sauter; R Böhm; A Böck
Journal:  Mol Microbiol       Date:  1992-06       Impact factor: 3.501

4.  Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance.

Authors:  Rie Matsumi; Kenji Manabe; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal:  J Bacteriol       Date:  2007-01-26       Impact factor: 3.490

Review 5.  Electron transfer in syntrophic communities of anaerobic bacteria and archaea.

Authors:  Alfons J M Stams; Caroline M Plugge
Journal:  Nat Rev Microbiol       Date:  2009-08       Impact factor: 60.633

6.  Function and regulation of the formate dehydrogenase genes of the methanogenic archaeon Methanococcus maripaludis.

Authors:  Gwendolyn E Wood; Andrew K Haydock; John A Leigh
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

7.  Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components.

Authors:  R Böhm; M Sauter; A Böck
Journal:  Mol Microbiol       Date:  1990-02       Impact factor: 3.501

8.  The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism.

Authors:  Hyun Sook Lee; Sung Gyun Kang; Seung Seob Bae; Jae Kyu Lim; Yona Cho; Yun Jae Kim; Jeong Ho Jeon; Sun-Shin Cha; Kae Kyoung Kwon; Hyung-Tae Kim; Cheol-Joo Park; Hee-Wook Lee; Seung Il Kim; Jongsik Chun; Rita R Colwell; Sang-Jin Kim; Jung-Hyun Lee
Journal:  J Bacteriol       Date:  2008-09-12       Impact factor: 3.490

9.  Metabolism of formate in Methanobacterium formicicum.

Authors:  N L Schauer; J G Ferry
Journal:  J Bacteriol       Date:  1980-06       Impact factor: 3.490

10.  Formate hydrogenlyase in the hyperthermophilic archaeon, Thermococcus litoralis.

Authors:  Mária Takács; András Tóth; Balázs Bogos; András Varga; Gábor Rákhely; Kornél L Kovács
Journal:  BMC Microbiol       Date:  2008-06-03       Impact factor: 3.605

View more
  69 in total

1.  Enrichment and proteome analysis of a hyperthermostable protein set of archaeon Thermococcus onnurineus NA1.

Authors:  Sung-Ho Yun; Chi-Won Choi; Sang Oh Kwon; Yeol Gyun Lee; Young-Ho Chung; Hoi Jong Jung; Yun-Jae Kim; Jung-Hyun Lee; Jong-Soon Choi; Soohyun Kim; Seung Il Kim
Journal:  Extremophiles       Date:  2011-04-23       Impact factor: 2.395

2.  Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough.

Authors:  Sofia M da Silva; Catarina Pimentel; Filipa M A Valente; Claudina Rodrigues-Pousada; Inês A C Pereira
Journal:  J Bacteriol       Date:  2011-04-15       Impact factor: 3.490

3.  Extracellular Vesicles of the Hyperthermophilic Archaeon "Thermococcus onnurineus" NA1T.

Authors:  Dong Hee Choi; Yong Min Kwon; Hiroshi Xavier Chiura; Eun Chan Yang; Seung Seob Bae; Sung Gyun Kang; Jung-Hyun Lee; Hwan Su Yoon; Sang-Jin Kim
Journal:  Appl Environ Microbiol       Date:  2015-05-01       Impact factor: 4.792

4.  A novel CO-responsive transcriptional regulator and enhanced H2 production by an engineered Thermococcus onnurineus NA1 strain.

Authors:  Min-Sik Kim; Ae Ran Choi; Seong Hyuk Lee; Hae-Chang Jung; Seung Seob Bae; Tae-Jun Yang; Jeong Ho Jeon; Jae Kyu Lim; Hwan Youn; Tae Wan Kim; Hyun Sook Lee; Sung Gyun Kang
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

5.  Direct Electron Transfer between the frhAGB-Encoded Hydrogenase and Thioredoxin Reductase in the Nonmethanogenic Archaeon Thermococcus onnurineus NA1.

Authors:  Hae-Chang Jung; Jae Kyu Lim; Tae-Jun Yang; Sung Gyun Kang; Hyun Sook Lee
Journal:  Appl Environ Microbiol       Date:  2020-03-02       Impact factor: 4.792

6.  Characterization of the frhAGB-encoding hydrogenase from a non-methanogenic hyperthermophilic archaeon.

Authors:  Jeong Ho Jeon; Jae Kyu Lim; Min-Sik Kim; Tae-Jun Yang; Seong-Hyuk Lee; Seung Seob Bae; Yun Jae Kim; Sang Hee Lee; Jung-Hyun Lee; Sung Gyun Kang; Hyun Sook Lee
Journal:  Extremophiles       Date:  2014-08-21       Impact factor: 2.395

7.  Structure of an Ancient Respiratory System.

Authors:  Hongjun Yu; Chang-Hao Wu; Gerrit J Schut; Dominik K Haja; Gongpu Zhao; John W Peters; Michael W W Adams; Huilin Li
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582

8.  Oxygen-mediated growth enhancement of an obligate anaerobic archaeon Thermococcus onnurineus NA1.

Authors:  Seong Hyuk Lee; Hwan Youn; Sung Gyun Kang; Hyun Sook Lee
Journal:  J Microbiol       Date:  2019-01-31       Impact factor: 3.422

9.  Thermodynamics of formate-oxidizing metabolism and implications for H2 production.

Authors:  Jae Kyu Lim; Seung Seob Bae; Tae Wan Kim; Jung-Hyun Lee; Hyun Sook Lee; Sung Gyun Kang
Journal:  Appl Environ Microbiol       Date:  2012-08-10       Impact factor: 4.792

10.  Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.

Authors:  Alexander V Lebedinsky; Andrey V Mardanov; Ilya V Kublanov; Vadim M Gumerov; Alexey V Beletsky; Anna A Perevalova; Salima Kh Bidzhieva; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin; Nikolai V Ravin
Journal:  Extremophiles       Date:  2013-12-24       Impact factor: 2.395

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.