Literature DB >> 21217005

Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP.

Pauline Vannier1, Viggo Thor Marteinsson, Olafur Hedinn Fridjonsson, Philippe Oger, Mohamed Jebbar.   

Abstract

Thermococcus barophilus is a hyperthermophilic, anaerobic, mixed heterotrophic, and carboxydotrophic euryarchaeon isolated from the deep sea hydrothermal vent Snakepit site on the mid-Atlantic ridge at a depth of 3,550 m. T. barophilus is the first true piezophilic, hyperthermophilic archaeon isolated, having an optimal growth at 40 MPa. Here we report the complete genome sequence of strain MP, the type strain of T. barophilus. The genome data reveal a close proximity with Thermococcus sibiricus, another Thermococcus isolated from the deep biosphere and a possible connection to life in the depths.

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Year:  2011        PMID: 21217005      PMCID: PMC3067617          DOI: 10.1128/JB.01490-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  11 in total

1.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.

Authors:  Toshiaki Fukui; Haruyuki Atomi; Tamotsu Kanai; Rie Matsumi; Shinsuke Fujiwara; Tadayuki Imanaka
Journal:  Genome Res       Date:  2005-02-14       Impact factor: 9.043

2.  Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Authors:  Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal:  DNA Res       Date:  1998-04-30       Impact factor: 4.458

3.  An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.

Authors:  Georges N Cohen; Valérie Barbe; Didier Flament; Michael Galperin; Roland Heilig; Odile Lecompte; Olivier Poch; Daniel Prieur; Joël Quérellou; Raymond Ripp; Jean-Claude Thierry; John Van der Oost; Jean Weissenbach; Yvan Zivanovic; Patrick Forterre
Journal:  Mol Microbiol       Date:  2003-03       Impact factor: 3.501

4.  Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences.

Authors:  D L Maeder; R B Weiss; D M Dunn; J L Cherry; J M González; J DiRuggiero; F T Robb
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

5.  Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life.

Authors:  Xiang Zeng; Jean-Louis Birrien; Yves Fouquet; Georgy Cherkashov; Mohamed Jebbar; Joël Querellou; Philippe Oger; Marie-Anne Cambon-Bonavita; Xiang Xiao; Daniel Prieur
Journal:  ISME J       Date:  2009-03-19       Impact factor: 10.302

6.  Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis.

Authors:  Andrey V Mardanov; Nikolai V Ravin; Vitali A Svetlitchnyi; Alexey V Beletsky; Margarita L Miroshnichenko; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin
Journal:  Appl Environ Microbiol       Date:  2009-05-15       Impact factor: 4.792

7.  CRISPI: a CRISPR interactive database.

Authors:  Christine Rousseau; Mathieu Gonnet; Marc Le Romancer; Jacques Nicolas
Journal:  Bioinformatics       Date:  2009-10-21       Impact factor: 6.937

8.  The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism.

Authors:  Hyun Sook Lee; Sung Gyun Kang; Seung Seob Bae; Jae Kyu Lim; Yona Cho; Yun Jae Kim; Jeong Ho Jeon; Sun-Shin Cha; Kae Kyoung Kwon; Hyung-Tae Kim; Cheol-Joo Park; Hee-Wook Lee; Seung Il Kim; Jongsik Chun; Rita R Colwell; Sang-Jin Kim; Jung-Hyun Lee
Journal:  J Bacteriol       Date:  2008-09-12       Impact factor: 3.490

9.  Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent.

Authors:  V T Marteinsson; J L Birrien; A L Reysenbach; M Vernet; D Marie; A Gambacorta; P Messner; U B Sleytr; D Prieur
Journal:  Int J Syst Bacteriol       Date:  1999-04

10.  Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.

Authors:  Yvan Zivanovic; Jean Armengaud; Arnaud Lagorce; Christophe Leplat; Philippe Guérin; Murielle Dutertre; Véronique Anthouard; Patrick Forterre; Patrick Wincker; Fabrice Confalonieri
Journal:  Genome Biol       Date:  2009-06-26       Impact factor: 13.583

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  25 in total

1.  Cloning and characterization of a novel fold-type I branched-chain amino acid aminotransferase from the hyperthermophilic archaeon Thermococcus sp. CKU-1.

Authors:  Yuki Uchida; Hideyuki Hayashi; Tsubasa Washio; Ryo Yamasaki; Shiro Kato; Tadao Oikawa
Journal:  Extremophiles       Date:  2014-04-01       Impact factor: 2.395

2.  Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Authors:  Mohamed Jebbar; Bruno Franzetti; Eric Girard; Philippe Oger
Journal:  Extremophiles       Date:  2015-06-23       Impact factor: 2.395

3.  Genetic tools for the piezophilic hyperthermophilic archaeon Pyrococcus yayanosii.

Authors:  Xuegong Li; Ling Fu; Zhen Li; Xiaopan Ma; Xiang Xiao; Jun Xu
Journal:  Extremophiles       Date:  2014-11-13       Impact factor: 2.395

Review 4.  Diversity of CRISPR systems in the euryarchaeal Pyrococcales.

Authors:  Cédric Norais; Annick Moisan; Christine Gaspin; Béatrice Clouet-d'Orval
Journal:  RNA Biol       Date:  2013-02-19       Impact factor: 4.652

5.  Complete genome sequence of Thermococcus sp. strain 4557, a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area.

Authors:  Xingna Wang; Zhaoming Gao; Xun Xu; Lingwei Ruan
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

6.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide.

Authors:  Philippe Oger; Tatyana G Sokolova; Darya A Kozhevnikova; Nikolai A Chernyh; Douglas H Bartlett; Elizaveta A Bonch-Osmolovskaya; Alexander V Lebedinsky
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

7.  Genetic manipulations of the hyperthermophilic piezophilic archaeon Thermococcus barophilus.

Authors:  Axel Thiel; Grégoire Michoud; Yann Moalic; Didier Flament; Mohamed Jebbar
Journal:  Appl Environ Microbiol       Date:  2014-01-31       Impact factor: 4.792

8.  Genomics and simulated laboratory studies reveal Thermococcus sp. 101C5 as a novel hyperthermophilic archaeon possessing a specialized metabolic arsenal for enhanced oil recovery.

Authors:  Neelam G Kapse; Vasundhara Paliwal; Sumit Singh Dagar; Dolly Pal Rana; Prashant K Dhakephalkar
Journal:  Antonie Van Leeuwenhoek       Date:  2021-11-03       Impact factor: 2.271

9.  Characterization of thermostable deblocking aminopeptidases of archaeon Thermococcus onnurineus NA1 by proteomic and biochemical approaches.

Authors:  Yeol Gyun Lee; Sun-Hee Leem; Young-Ho Chung; Seung Il Kim
Journal:  J Microbiol       Date:  2012-11-04       Impact factor: 3.422

10.  Hyperthermophilic Carbamate Kinase Stability and Anabolic In Vitro Activity at Alkaline pH.

Authors:  James E Hennessy; Melissa J Latter; Somayeh Fazelinejad; Amy Philbrook; Daniel M Bartkus; Hye-Kyung Kim; Hideki Onagi; John G Oakeshott; Colin Scott; Apostolos Alissandratos; Christopher J Easton
Journal:  Appl Environ Microbiol       Date:  2018-01-17       Impact factor: 4.792

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