Literature DB >> 24287651

What stories can the Frankia genomes start to tell us?

Louis S Tisa1, Nicholas Beauchemin, Maher Gtari, Arnab Sen, Luis G Wall.   

Abstract

Among the Actinobacteria, the genus Frankia is well known for its facultative lifestyle as a plant symbiont of dicotyledonous plants and as a free-living soil dweller. Frankia sp. strains are generally classified into one of four major phylogenetic groups that have distinctive plant host ranges. Our understanding of these bacteria has been greatly facilitated by the availability of the first three complete genome sequences, which suggested a correlation between genome size and plant host range. Since that first report, eight more Frankia genomes have been sequenced. Representatives from all four lineages have been sequenced to provide vital baseline information for genomic approaches toward understanding these novel bacteria. An overview of the Frankia genomes will be presented to stimulate discussion on the potential of these organisms and a greater understanding of their physiology and evolution.

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Year:  2013        PMID: 24287651     DOI: 10.1007/s12038-013-9364-1

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  26 in total

1.  Analysis of Frankia evolutionary radiation using glnII sequences.

Authors:  B Cournoyer; C Lavire
Journal:  FEMS Microbiol Lett       Date:  1999-08-01       Impact factor: 2.742

2.  Identification of TTA codon containing genes in Frankia and exploration of the role of tRNA in regulating these genes.

Authors:  Arnab Sen; Subarna Thakur; Asim K Bothra; Saubashya Sur; Louis S Tisa
Journal:  Arch Microbiol       Date:  2011-07-20       Impact factor: 2.552

3.  The Frankia alni symbiotic transcriptome.

Authors:  Nicole Alloisio; Clothilde Queiroux; Pascale Fournier; Petar Pujic; Philippe Normand; David Vallenet; Claudine Médigue; Masatoshi Yamaura; Kentaro Kakoi; Ken-ichi Kucho
Journal:  Mol Plant Microbe Interact       Date:  2010-05       Impact factor: 4.171

4.  Characterization of an ineffective actinorhizal microsymbiont, Frankia sp. EuI1 (Actinomycetales).

Authors:  D Baker; W Newcomb; J G Torrey
Journal:  Can J Microbiol       Date:  1980-09       Impact factor: 2.419

5.  Differential effects of rare specific flavonoids on compatible and incompatible strains in the Myrica gale-Frankia actinorhizal symbiosis.

Authors:  Jean Popovici; Gilles Comte; Emilie Bagnarol; Nicole Alloisio; Pascale Fournier; Floriant Bellvert; Cédric Bertrand; Maria P Fernandez
Journal:  Appl Environ Microbiol       Date:  2010-02-26       Impact factor: 4.792

6.  The integrated microbial genomes (IMG) system.

Authors:  Victor M Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Greg Werner; Anu Padki; Xueling Zhao; Inna Dubchak; Philip Hugenholtz; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia Ivanova; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia.

Authors:  Derek M Bickhart; Johann P Gogarten; Pascal Lapierre; Louis S Tisa; Philippe Normand; David R Benson
Journal:  BMC Genomics       Date:  2009-10-12       Impact factor: 3.969

8.  Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis.

Authors:  Faten Ghodhbane-Gtari; Nicholas Beauchemin; David Bruce; Patrick Chain; Amy Chen; Karen Walston Davenport; Shweta Deshpande; Chris Detter; Teal Furnholm; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Miriam L Land; Victor Markowitz; Kostas Mavrommatis; Matt Nolan; Imen Nouioui; Ioanna Pagani; Amrita Pati; Sam Pitluck; Catarina L Santos; Arnab Sen; Saubashya Sur; Ernest Szeto; Fernando Tavares; Hazuki Teshima; Subarna Thakur; Luis Wall; Tanja Woyke; Louis S Tisa
Journal:  Genome Announc       Date:  2013-03-14

9.  Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils.

Authors:  Imen Nouioui; Nicholas Beauchemin; Michael N Cantor; Amy Chen; J Chris Detter; Teal Furnholm; Faten Ghodhbane-Gtari; Lynne Goodwin; Maher Gtari; Cliff Han; James Han; Marcel Huntemann; Susan Xinyu Hua; Natalia Ivanova; Nikos Kyrpides; Victor Markowitz; Kostas Mavrommatis; Natalia Mikhailova; Henrik P Nordberg; Galina Ovchinnikova; Ioanna Pagani; Amrita Pati; Arnab Sen; Saubashya Sur; Ernest Szeto; Subarna Thakur; Luis Wall; Chia-Lin Wei; Tanja Woyke; Louis S Tisa
Journal:  Genome Announc       Date:  2013-07-11

10.  Comparative secretome analysis suggests low plant cell wall degrading capacity in Frankia symbionts.

Authors:  Juliana E Mastronunzio; Louis S Tisa; Philippe Normand; David R Benson
Journal:  BMC Genomics       Date:  2008-01-28       Impact factor: 3.969

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  15 in total

1.  Pb2+ tolerance by Frankia sp. strain EAN1pec involves surface-binding.

Authors:  Teal Furnholm; Medhat Rehan; Jessica Wishart; Louis S Tisa
Journal:  Microbiology (Reading)       Date:  2017-04-26       Impact factor: 2.777

Review 2.  Transcription factors network in root endosymbiosis establishment and development.

Authors:  Issa Diédhiou; Diaga Diouf
Journal:  World J Microbiol Biotechnol       Date:  2018-02-15       Impact factor: 3.312

Review 3.  Phylogenetic analysis of vitamin B12-related metabolism in Mycobacterium tuberculosis.

Authors:  Douglas B Young; Iñaki Comas; Luiz P S de Carvalho
Journal:  Front Mol Biosci       Date:  2015-03-04

4.  Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.

Authors:  Tomas Persson; Kai Battenberg; Irina V Demina; Theoden Vigil-Stenman; Brian Vanden Heuvel; Petar Pujic; Marc T Facciotti; Elizabeth G Wilbanks; Anna O'Brien; Pascale Fournier; Maria Antonia Cruz Hernandez; Alberto Mendoza Herrera; Claudine Médigue; Philippe Normand; Katharina Pawlowski; Alison M Berry
Journal:  PLoS One       Date:  2015-05-28       Impact factor: 3.240

5.  Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales.

Authors:  Imen Nouioui; Maher Gtari; Markus Göker; Faten Ghodhbane-Gtari; Louis S Tisa; Maria P Fernandez; Philippe Normand; Marcel Huntemann; Alicia Clum; Manoj Pillay; Neha Varghese; T B K Reddy; Natalia Ivanova; Tanja Woyke; Nikos C Kyrpides; Hans-Peter Klenk
Journal:  Genome Announc       Date:  2016-05-26

6.  Permanent Draft Genome Sequence for Frankia sp. Strain CeD, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Casuarina equistifolia Grown in Senegal.

Authors:  Mariama Ngom; Rediet Oshone; Sheldon G Hurst; Feseha Abebe-Akele; Stephen Simpson; Krystalynne Morris; Mame Ourèye Sy; Antony Champion; W Kelley Thomas; Louis S Tisa
Journal:  Genome Announc       Date:  2016-04-07

7.  The ins and outs of metal homeostasis by the root nodule actinobacterium Frankia.

Authors:  Teal R Furnholm; Louis S Tisa
Journal:  BMC Genomics       Date:  2014-12-12       Impact factor: 3.969

8.  Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina.

Authors:  Louis S Tisa; Nicholas Beauchemin; Michael N Cantor; Teal Furnholm; Faten Ghodhbane-Gtari; Lynne Goodwin; Alex Copeland; Maher Gtari; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Victor Markowitz; Kostas Mavrommatis; Natalia Mikhailova; Imen Nouioui; Rediet Oshone; Galina Ovchinnikova; Ioanna Pagani; Krishnaveni Palaniappan; Amrita Pati; Arnab Sen; Nicole Shapiro; Ernest Szeto; Luis Wall; Jessie Wishart; Tanja Woyke
Journal:  Genome Announc       Date:  2015-08-06

9.  Permanent Draft Genome Sequence of Frankia sp. Strain ACN1ag, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus glutinosa.

Authors:  Erik Swanson; Rediet Oshone; Stephen Simpson; Krystalynne Morris; Feseha Abebe-Akele; W Kelley Thomas; Louis S Tisa
Journal:  Genome Announc       Date:  2015-12-17

10.  Permanent Draft Genome Sequence of Frankia sp. Strain Allo2, a Salt-Tolerant Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Allocasuarina.

Authors:  Rediet Oshone; Mariama Ngom; Feseha Abebe-Akele; Stephen Simpson; Krystalynne Morris; Mame Ourèye Sy; Antony Champion; W Kelley Thomas; Louis S Tisa
Journal:  Genome Announc       Date:  2016-05-19
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