Literature DB >> 22112388

The Human Microbiome Project: lessons from human genomics.

Cecil M Lewis1, Alexandra Obregón-Tito, Raul Y Tito, Morris W Foster, Paul G Spicer.   

Abstract

The Human Microbiome Project (HMP) is following in the footsteps of the Human Genome Project (HGP), which will include exciting discoveries, but also potential disappointment and resentment over the lack of medical applications. There is a wiser path for the HMP. This path includes a greater attention to rare variation, an early commitment to an ethical inclusion of indigenous communities, and a recruitment strategy in which medical benefits are de-emphasized.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID： 22112388      PMCID： PMC3709440          DOI： 10.1016/j.tim.2011.10.004

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN： 0966-842X            Impact factor:   17.079


  14 in total

1.  Forensic identification using skin bacterial communities.

Authors:  Noah Fierer; Christian L Lauber; Nick Zhou; Daniel McDonald; Elizabeth K Costello; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

2.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa.

Authors:  Sohini Ramachandran; Omkar Deshpande; Charles C Roseman; Noah A Rosenberg; Marcus W Feldman; L Luca Cavalli-Sforza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

3.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

4.  Grappling with groups: protecting collective interests in biomedical research.

Authors:  Richard R Sharp; Morris W Foster
Journal:  J Med Philos       Date:  2007 Jul-Aug

5.  Antibiotic overuse: Stop the killing of beneficial bacteria.

Authors:  Martin Blaser
Journal:  Nature       Date:  2011-08-24       Impact factor: 49.962

6.  Ascertainment bias in estimates of average heterozygosity.

Authors:  A R Rogers; L B Jorde
Journal:  Am J Hum Genet       Date:  1996-05       Impact factor: 11.025

7.  On the allelic spectrum of human disease.

Authors:  D E Reich; E S Lander
Journal:  Trends Genet       Date:  2001-09       Impact factor: 11.639

8.  Implications of the Human Genome Project for medical science.

Authors:  F S Collins; V A McKusick
Journal:  JAMA       Date:  2001-02-07       Impact factor: 56.272

9.  Rare variants create synthetic genome-wide associations.

Authors:  Samuel P Dickson; Kai Wang; Ian Krantz; Hakon Hakonarson; David B Goldstein
Journal:  PLoS Biol       Date:  2010-01-26       Impact factor: 8.029

Review 10.  The human intestinal microbiome: a new frontier of human biology.

Authors:  Masahira Hattori; Todd D Taylor
Journal:  DNA Res       Date:  2009-01-15       Impact factor: 4.458
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  16 in total

1.  Are changes to the common rule necessary to address evolving areas of research? A case study focusing on the human microbiome project.

Authors:  Diane E Hoffmann; J Dennis Fortenberry; Jacques Ravel
Journal:  J Law Med Ethics       Date:  2013       Impact factor: 1.718

Review 2.  The Ethics of Big Data: Current and Foreseeable Issues in Biomedical Contexts.

Authors:  Brent Daniel Mittelstadt; Luciano Floridi
Journal:  Sci Eng Ethics       Date:  2015-05-23       Impact factor: 3.525

3.  ENGAGING NATIVE AMERICANS IN GENOMICS RESEARCH.

Authors:  Ripan S Malhi; Alyssa Bader
Journal:  Am Anthropol       Date:  2015-12-04

4.  Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru.

Authors:  Lindsey O'Neal; Alexandra J Obregón-Tito; Raul Y Tito; Andrew T Ozga; Susan I Polo; Cecil M Lewis; Paul A Lawson
Journal:  Anaerobe       Date:  2015-06-26       Impact factor: 3.331

Review 5.  Ethical microbiome research with Indigenous communities.

Authors:  Shani Msafiri Mangola; Justin R Lund; Stephanie L Schnorr; Alyssa N Crittenden
Journal:  Nat Microbiol       Date:  2022-05-16       Impact factor: 30.964

6.  Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru.

Authors:  Nisha B Patel; Raul Y Tito; Alexandra J Obregón-Tito; Lindsey O'Neal; Omar Trujillo-Villaroel; Luis Marin-Reyes; Luzmila Troncoso-Corzo; Emilio Guija-Poma; Moriyuki Hamada; Yoshihito Uchino; Cecil M Lewis; Paul A Lawson
Journal:  Anaerobe       Date:  2014-12-04       Impact factor: 3.331

7.  Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma.

Authors:  Krithivasan Sankaranarayanan; Andrew T Ozga; Christina Warinner; Raul Y Tito; Alexandra J Obregon-Tito; Jiawu Xu; Patrick M Gaffney; Lori L Jervis; Derrell Cox; Lancer Stephens; Morris Foster; Gloria Tallbull; Paul Spicer; Cecil M Lewis
Journal:  Curr Biol       Date:  2015-12-06       Impact factor: 10.834

Review 8.  [Research progress on carbohydrate active enzymes of human microbiome].

Authors:  Zhi-Yan Zhou; Xin Xu; Yuan Zhou
Journal:  Hua Xi Kou Qiang Yi Xue Za Zhi       Date:  2019-12-01

9.  Looking back at genomic medicine in 2011.

Authors:  Charles Auffray; Timothy Caulfield; Muin J Khoury; James R Lupski; Matthias Schwab; Timothy Veenstra
Journal:  Genome Med       Date:  2012-01-30       Impact factor: 11.117

10.  CRISPR regulation of intraspecies diversification by limiting IS transposition and intercellular recombination.

Authors:  Takayasu Watanabe; Takashi Nozawa; Chihiro Aikawa; Atsuo Amano; Fumito Maruyama; Ichiro Nakagawa
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416
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