Literature DB >> 22091701

Mechanism of S-oxygenation by a cysteine dioxygenase model complex.

Devesh Kumar1, G Narahari Sastry, David P Goldberg, Sam P de Visser.   

Abstract

In this work, we present the first computational study on a biomimetic cysteine dioxygenase model complex, [Fe(II)(LN(3)S)](+), in which LN(3)S is a tetradentate ligand with a bis(imino)pyridyl scaffold and a pendant arylthiolate group. The reaction mechanism of sulfur dioxygenation with O(2) was examined by density functional theory (DFT) methods and compared with results obtained for cysteine dioxygenase. The reaction proceeds via multistate reactivity patterns on competing singlet, triplet, and quintet spin state surfaces. The reaction mechanism is analogous to that found for cysteine dioxygenase enzymes (Kumar, D.; Thiel, W.; de Visser, S. P. J. Am. Chem. Soc. 2011, 133, 3869-3882); hence, the computations indicate that this complex can closely mimic the enzymatic process. The catalytic mechanism starts from an iron(III)-superoxo complex and the attack of the terminal oxygen atom of the superoxo group on the sulfur atom of the ligand. Subsequently, the dioxygen bond breaks to form an iron(IV)-oxo complex with a bound sulfenato group. After reorganization, the second oxygen atom is transferred to the substrate to give a sulfinic acid product. An alternative mechanism involving the direct attack of dioxygen on the sulfur, without involving any iron-oxygen intermediates, was also examined. Importantly, a significant energetic preference for dioxygen coordinating to the iron center prior to attack at sulfur was discovered and serves to elucidate the function of the metal ion in the reaction process. The computational results are in good agreement with experimental observations, and the differences and similarities of the biomimetic complex and the enzymatic cysteine dioxygenase center are highlighted.

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Year:  2011        PMID: 22091701      PMCID: PMC3267236          DOI: 10.1021/jp208230g

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  87 in total

1.  What factors influence the rate constant of substrate epoxidation by compound I of cytochrome P450 and analogous iron(IV)-oxo oxidants?

Authors:  Devesh Kumar; Baharan Karamzadeh; G Narahari Sastry; Sam P de Visser
Journal:  J Am Chem Soc       Date:  2010-06-09       Impact factor: 15.419

2.  Two-state reactivity in alkane hydroxylation by non-heme iron-oxo complexes.

Authors:  Hajime Hirao; Devesh Kumar; Lawrence Que; Sason Shaik
Journal:  J Am Chem Soc       Date:  2006-07-05       Impact factor: 15.419

3.  Combined experimental and theoretical study on aromatic hydroxylation by mononuclear nonheme iron(IV)-oxo complexes.

Authors:  Sam P de Visser; Kyungeun Oh; Ah-Rim Han; Wonwoo Nam
Journal:  Inorg Chem       Date:  2007-04-20       Impact factor: 5.165

4.  Structural "snapshots" along reaction pathways of non-heme iron enzymes.

Authors:  Joseph P Emerson; Erik R Farquhar; Lawrence Que
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Substitution of hydrogen by deuterium changes the regioselectivity of ethylbenzene hydroxylation by an oxo-iron-porphyrin catalyst.

Authors:  Sam P de Visser
Journal:  Chemistry       Date:  2006-10-25       Impact factor: 5.236

6.  A synthetic analogue of the active site of Fe-containing nitrile hydratase with carboxamido N and thiolato S as donors: synthesis, structure, and reactivities.

Authors:  J C Noveron; M M Olmstead; P K Mascharak
Journal:  J Am Chem Soc       Date:  2001-04-11       Impact factor: 15.419

7.  Multistate reactivity in styrene epoxidation by compound I of cytochrome p450: mechanisms of products and side products formation.

Authors:  Devesh Kumar; Sam P de Visser; Sason Shaik
Journal:  Chemistry       Date:  2005-04-22       Impact factor: 5.236

8.  A low-spin alkylperoxo-iron(III) complex with weak Fe-O and O-O bonds: implications for the mechanism of superoxide reductase.

Authors:  Divya Krishnamurthy; Gary D Kasper; Frances Namuswe; William D Kerber; Amy A Narducci Sarjeant; Pierre Moënne-Loccoz; David P Goldberg
Journal:  J Am Chem Soc       Date:  2006-11-08       Impact factor: 15.419

9.  How does the axial ligand of cytochrome P450 biomimetics influence the regioselectivity of aliphatic versus aromatic hydroxylation?

Authors:  Sam P de Visser; Laleh Tahsini; Wonwoo Nam
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

10.  Synthesis of amino acid cofactor in cysteine dioxygenase is regulated by substrate and represents a novel post-translational regulation of activity.

Authors:  John E Dominy; Jesse Hwang; Stephanie Guo; Lawrence L Hirschberger; Sheng Zhang; Martha H Stipanuk
Journal:  J Biol Chem       Date:  2008-02-28       Impact factor: 5.157

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  14 in total

1.  Synthesis and ligand non-innocence of thiolate-ligated (N4S) Iron(II) and nickel(II) bis(imino)pyridine complexes.

Authors:  Leland R Widger; Yunbo Jiang; Maxime A Siegler; Devesh Kumar; Reza Latifi; Sam P de Visser; Guy N L Jameson; David P Goldberg
Journal:  Inorg Chem       Date:  2013-08-30       Impact factor: 5.165

2.  Photoinitiated Reactivity of a Thiolate-Ligated, Spin-Crossover Nonheme {FeNO}(7) Complex with Dioxygen.

Authors:  Alison C McQuilken; Hirotoshi Matsumura; Maximilian Dürr; Alex M Confer; John P Sheckelton; Maxime A Siegler; Tyrel M McQueen; Ivana Ivanović-Burmazović; Pierre Moënne-Loccoz; David P Goldberg
Journal:  J Am Chem Soc       Date:  2016-02-26       Impact factor: 15.419

3.  Sulfur oxygenation in biomimetic non-heme iron-thiolate complexes.

Authors:  Alison C McQuilken; David P Goldberg
Journal:  Dalton Trans       Date:  2012-08-28       Impact factor: 4.390

Review 4.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

5.  Cysteine dioxygenase structures from pH4 to 9: consistent cys-persulfenate formation at intermediate pH and a Cys-bound enzyme at higher pH.

Authors:  Camden M Driggers; Richard B Cooley; Banumathi Sankaran; Lawrence L Hirschberger; Martha H Stipanuk; P Andrew Karplus
Journal:  J Mol Biol       Date:  2013-06-07       Impact factor: 5.469

6.  Axial and equatorial ligand effects on biomimetic cysteine dioxygenase model complexes.

Authors:  Luis E Gonzalez-Ovalle; Matthew G Quesne; Devesh Kumar; David P Goldberg; Sam P de Visser
Journal:  Org Biomol Chem       Date:  2012-06-19       Impact factor: 3.876

7.  Superoxide Oxidation by a Thiolate-Ligated Iron Complex and Anion Inhibition.

Authors:  Maksym A Dedushko; Jessica H Pikul; Julie A Kovacs
Journal:  Inorg Chem       Date:  2021-04-26       Impact factor: 5.165

8.  Metal-Assisted Oxo Atom Addition to an Fe(III) Thiolate.

Authors:  Gloria Villar-Acevedo; Priscilla Lugo-Mas; Maike N Blakely; Julian A Rees; Abbie S Ganas; Erin M Hanada; Werner Kaminsky; Julie A Kovacs
Journal:  J Am Chem Soc       Date:  2016-12-29       Impact factor: 15.419

9.  Synthesis, X-ray Structures, Electronic Properties, and O2/NO Reactivities of Thiol Dioxygenase Active-Site Models.

Authors:  Anne A Fischer; Nuru Stracey; Sergey V Lindeman; Thomas C Brunold; Adam T Fiedler
Journal:  Inorg Chem       Date:  2016-11-01       Impact factor: 5.165

10.  Preparation of non-heme {FeNO}7 models of cysteine dioxygenase: sulfur versus nitrogen ligation and photorelease of nitric oxide.

Authors:  Alison C McQuilken; Yang Ha; Kyle D Sutherlin; Maxime A Siegler; Keith O Hodgson; Britt Hedman; Edward I Solomon; Guy N L Jameson; David P Goldberg
Journal:  J Am Chem Soc       Date:  2013-09-17       Impact factor: 15.419

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