Literature DB >> 22091124

Benzyl 3-[(E)-1-(pyrazin-2-yl)ethyl-idene]dithio-carbazate.

Shang Shan1, Yan-Lan Huang, Han-Qi Guo, Deng-Feng Li, Jian Sun.   

Abstract

The title compound, C(14)H(14)N(4)S(2), was obtained from a condensation reaction of benzyl dithio-carbazate and acetyl-pyrazine. The asymmetric unit contains two independent mol-ecules, in each of which the pyrazine ring and dithio-carbazate unit are approximately co-planar, the r.m.s. deviations being 0.0304 and 0.0418 Å. The mean plane is oriented with respect to the benzene ring at 49.22 (4)° in one mol-ecule and at 69.76 (7)° in the other. In the crystal, the mol-ecules are linked to each other via inter-molecular N-H⋯S hydrogen bonds, forming centrosymmetric supra-molecular dimers.

Entities:  

Year:  2011        PMID: 22091124      PMCID: PMC3213547          DOI: 10.1107/S1600536811028480

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of hydrazone and its derivatives in the biological field, see: Okabe et al. (1993 ▶); Hu et al. (2001 ▶). For related structures, see: Shan et al. (2006 ▶, 2008a ▶,b ▶). For the synthesis, see: Hu et al. (2001 ▶).

Experimental

Crystal data

C14H14N4S2 M = 302.41 Triclinic, a = 9.511 (3) Å b = 9.786 (3) Å c = 17.144 (5) Å α = 90.688 (4)° β = 100.178 (6)° γ = 111.006 (6)° V = 1461.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 294 K 0.45 × 0.23 × 0.22 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.88, T max = 0.90 9171 measured reflections 5249 independent reflections 3005 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.111 S = 0.94 5249 reflections 364 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.22 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811028480/xu5267sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811028480/xu5267Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811028480/xu5267Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H14N4S2Z = 4
Mr = 302.41F(000) = 632
Triclinic, P1Dx = 1.375 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.511 (3) ÅCell parameters from 5249 reflections
b = 9.786 (3) Åθ = 3.3–25.2°
c = 17.144 (5) ŵ = 0.36 mm1
α = 90.688 (4)°T = 294 K
β = 100.178 (6)°Needle, yellow
γ = 111.006 (6)°0.45 × 0.23 × 0.22 mm
V = 1461.2 (8) Å3
Rigaku R-AXIS RAPID IP diffractometer5249 independent reflections
Radiation source: fine-focus sealed tube3005 reflections with I > 2σ(I)
graphiteRint = 0.027
Detector resolution: 10.0 pixels mm-1θmax = 25.2°, θmin = 3.4°
ω scansh = −11→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −10→11
Tmin = 0.88, Tmax = 0.90l = −17→20
9171 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0442P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94(Δ/σ)max < 0.001
5249 reflectionsΔρmax = 0.21 e Å3
364 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0051 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.37949 (8)0.30497 (8)0.39964 (4)0.0577 (2)
S20.47351 (8)0.22593 (7)0.25099 (4)0.0478 (2)
S30.36950 (8)0.79605 (8)0.39238 (4)0.0576 (2)
S40.47142 (8)0.73081 (7)0.24347 (4)0.0475 (2)
N10.9596 (3)−0.0100 (2)0.37093 (13)0.0612 (6)
N20.9043 (3)0.0108 (3)0.20740 (14)0.0678 (7)
N30.6706 (2)0.1393 (2)0.35110 (11)0.0440 (5)
N40.5883 (2)0.1903 (2)0.39383 (12)0.0462 (5)
H4N0.60290.19050.44480.055*
N50.9564 (3)0.4878 (2)0.37052 (13)0.0579 (6)
N60.9118 (3)0.5081 (3)0.20683 (14)0.0700 (7)
N70.6718 (2)0.6436 (2)0.34506 (12)0.0451 (5)
N80.5870 (2)0.6937 (2)0.38655 (12)0.0475 (5)
H8N0.60220.69620.43760.057*
C10.8542 (3)0.0416 (2)0.33694 (14)0.0419 (6)
C20.8283 (3)0.0504 (3)0.25545 (16)0.0575 (7)
H20.75320.08620.23310.069*
C31.0097 (3)−0.0394 (3)0.24298 (18)0.0623 (8)
H31.0675−0.06800.21240.075*
C41.0353 (3)−0.0503 (3)0.32220 (18)0.0664 (8)
H41.1094−0.08780.34390.080*
C50.7692 (3)0.0897 (2)0.38862 (14)0.0421 (6)
C60.8013 (3)0.0798 (3)0.47576 (15)0.0646 (8)
H6A0.82970.17520.50260.097*
H6B0.88380.04450.48940.097*
H6C0.71100.01320.49170.097*
C70.4838 (3)0.2402 (2)0.35357 (14)0.0420 (6)
C80.3348 (3)0.3081 (3)0.21370 (14)0.0513 (7)
H8A0.24070.26090.23330.062*
H8B0.37510.41180.23140.062*
C90.3036 (3)0.2880 (2)0.12422 (15)0.0443 (6)
C100.1556 (3)0.2220 (3)0.08232 (16)0.0591 (8)
H100.07490.18830.10950.071*
C110.1261 (4)0.2054 (3)0.00069 (19)0.0731 (9)
H110.02540.1628−0.02700.088*
C120.2447 (4)0.2513 (3)−0.04033 (18)0.0697 (9)
H120.22460.2382−0.09560.084*
C130.3914 (4)0.3160 (3)0.00040 (18)0.0670 (8)
H130.47200.3470−0.02710.080*
C140.4215 (3)0.3359 (3)0.08218 (17)0.0590 (8)
H140.52210.38190.10940.071*
C150.8569 (3)0.5450 (2)0.33416 (14)0.0401 (6)
C160.8372 (3)0.5543 (3)0.25265 (15)0.0568 (7)
H160.76760.59540.22890.068*
C171.0091 (3)0.4506 (3)0.24458 (18)0.0620 (8)
H171.06420.41530.21530.074*
C181.0308 (3)0.4415 (3)0.32380 (18)0.0623 (8)
H181.10130.40100.34700.075*
C190.7713 (3)0.5969 (2)0.38395 (14)0.0430 (6)
C200.8037 (3)0.5919 (3)0.47198 (15)0.0620 (8)
H20A0.82940.68810.49720.093*
H20B0.88820.55960.48690.093*
H20C0.71450.52470.48840.093*
C210.4789 (3)0.7394 (2)0.34580 (14)0.0416 (6)
C220.3174 (3)0.7955 (3)0.20720 (14)0.0487 (7)
H22A0.22490.73660.22540.058*
H22B0.34570.89690.22710.058*
C230.2895 (3)0.7829 (3)0.11759 (14)0.0428 (6)
C240.2221 (3)0.6467 (3)0.07488 (16)0.0533 (7)
H240.19380.56210.10180.064*
C250.1965 (3)0.6353 (3)−0.00675 (17)0.0605 (8)
H250.15160.5432−0.03470.073*
C260.2366 (3)0.7584 (3)−0.04698 (16)0.0632 (8)
H260.21940.7505−0.10220.076*
C270.3021 (4)0.8932 (3)−0.00586 (17)0.0677 (8)
H270.32830.9775−0.03310.081*
C280.3295 (3)0.9046 (3)0.07592 (17)0.0599 (8)
H280.37610.99700.10340.072*
U11U22U33U12U13U23
S10.0636 (5)0.0886 (5)0.0419 (4)0.0505 (4)0.0153 (4)0.0049 (4)
S20.0585 (5)0.0617 (4)0.0362 (4)0.0382 (3)0.0076 (3)0.0020 (3)
S30.0596 (5)0.0915 (5)0.0420 (4)0.0499 (4)0.0142 (3)0.0052 (4)
S40.0525 (4)0.0643 (4)0.0365 (4)0.0341 (3)0.0091 (3)0.0026 (3)
N10.0642 (16)0.0921 (16)0.0485 (14)0.0546 (14)0.0094 (12)0.0079 (12)
N20.0755 (18)0.1014 (18)0.0466 (15)0.0511 (15)0.0225 (13)0.0082 (13)
N30.0461 (13)0.0598 (12)0.0379 (12)0.0323 (11)0.0103 (10)0.0047 (10)
N40.0507 (13)0.0675 (13)0.0327 (11)0.0351 (11)0.0105 (10)0.0069 (10)
N50.0585 (15)0.0868 (15)0.0464 (14)0.0465 (13)0.0135 (12)0.0071 (12)
N60.0879 (19)0.0954 (17)0.0469 (15)0.0527 (16)0.0235 (14)0.0005 (13)
N70.0465 (13)0.0607 (12)0.0394 (12)0.0327 (11)0.0092 (10)0.0033 (10)
N80.0505 (13)0.0693 (13)0.0345 (12)0.0355 (11)0.0090 (10)0.0047 (10)
C10.0427 (15)0.0487 (13)0.0382 (15)0.0213 (12)0.0080 (12)0.0037 (11)
C20.065 (2)0.0804 (18)0.0451 (17)0.0451 (16)0.0155 (15)0.0124 (14)
C30.062 (2)0.0807 (19)0.059 (2)0.0377 (16)0.0260 (16)0.0021 (16)
C40.064 (2)0.095 (2)0.063 (2)0.0555 (17)0.0150 (17)0.0080 (17)
C50.0412 (15)0.0532 (14)0.0360 (14)0.0225 (12)0.0064 (12)0.0055 (11)
C60.069 (2)0.107 (2)0.0379 (16)0.0568 (17)0.0089 (14)0.0074 (15)
C70.0450 (15)0.0468 (13)0.0385 (14)0.0217 (12)0.0088 (12)0.0036 (11)
C80.0585 (17)0.0630 (15)0.0456 (16)0.0384 (14)0.0090 (13)0.0040 (12)
C90.0510 (17)0.0437 (14)0.0449 (16)0.0264 (12)0.0065 (13)0.0077 (12)
C100.0509 (18)0.0758 (18)0.0556 (19)0.0294 (15)0.0090 (15)0.0125 (15)
C110.062 (2)0.088 (2)0.058 (2)0.0224 (17)−0.0059 (18)0.0055 (17)
C120.090 (3)0.077 (2)0.0420 (18)0.0338 (18)0.0051 (18)0.0095 (15)
C130.069 (2)0.0793 (19)0.056 (2)0.0275 (17)0.0208 (17)0.0164 (16)
C140.0530 (18)0.0644 (17)0.0540 (19)0.0167 (14)0.0058 (15)0.0106 (14)
C150.0398 (15)0.0486 (13)0.0346 (14)0.0195 (12)0.0067 (12)0.0027 (11)
C160.066 (2)0.0785 (18)0.0397 (16)0.0432 (16)0.0096 (14)0.0060 (14)
C170.068 (2)0.0739 (18)0.062 (2)0.0402 (16)0.0272 (16)0.0011 (15)
C180.063 (2)0.090 (2)0.0549 (19)0.0510 (17)0.0162 (15)0.0061 (16)
C190.0440 (16)0.0530 (14)0.0381 (15)0.0243 (12)0.0092 (12)0.0046 (11)
C200.0646 (19)0.101 (2)0.0391 (16)0.0539 (17)0.0077 (14)0.0021 (14)
C210.0421 (15)0.0479 (13)0.0388 (14)0.0217 (11)0.0071 (12)0.0020 (11)
C220.0529 (17)0.0579 (15)0.0446 (16)0.0318 (13)0.0081 (13)0.0048 (12)
C230.0401 (15)0.0526 (15)0.0421 (15)0.0252 (12)0.0065 (12)0.0051 (12)
C240.0583 (18)0.0520 (16)0.0512 (18)0.0229 (13)0.0085 (14)0.0069 (13)
C250.0604 (19)0.0646 (18)0.0541 (19)0.0246 (15)0.0020 (15)−0.0082 (15)
C260.071 (2)0.086 (2)0.0405 (17)0.0403 (17)0.0041 (15)0.0041 (16)
C270.085 (2)0.0684 (19)0.055 (2)0.0332 (16)0.0161 (17)0.0223 (16)
C280.073 (2)0.0510 (15)0.0564 (19)0.0264 (14)0.0073 (15)0.0055 (14)
S1—C71.651 (2)C9—C101.376 (3)
S2—C71.745 (2)C9—C141.383 (4)
S2—C81.808 (2)C10—C111.374 (4)
S3—C211.650 (2)C10—H100.9300
S4—C211.743 (3)C11—C121.376 (4)
S4—C221.813 (2)C11—H110.9300
N1—C11.327 (3)C12—C131.360 (4)
N1—C41.335 (3)C12—H120.9300
N2—C21.325 (3)C13—C141.377 (4)
N2—C31.327 (3)C13—H130.9300
N3—C51.284 (3)C14—H140.9300
N3—N41.368 (3)C15—C161.385 (3)
N4—C71.348 (3)C15—C191.477 (3)
N4—H4N0.8600C16—H160.9300
N5—C181.330 (3)C17—C181.346 (4)
N5—C151.333 (3)C17—H170.9300
N6—C161.321 (3)C18—H180.9300
N6—C171.328 (3)C19—C201.491 (3)
N7—C191.282 (3)C20—H20A0.9600
N7—N81.370 (3)C20—H20B0.9600
N8—C211.352 (3)C20—H20C0.9600
N8—H8N0.8600C22—C231.508 (3)
C1—C21.384 (3)C22—H22A0.9700
C1—C51.475 (3)C22—H22B0.9700
C2—H20.9300C23—C281.366 (3)
C3—C41.349 (4)C23—C241.386 (3)
C3—H30.9300C24—C251.374 (4)
C4—H40.9300C24—H240.9300
C5—C61.482 (3)C25—C261.362 (4)
C6—H6A0.9600C25—H250.9300
C6—H6B0.9600C26—C271.363 (3)
C6—H6C0.9600C26—H260.9300
C8—C91.507 (3)C27—C281.376 (4)
C8—H8A0.9700C27—H270.9300
C8—H8B0.9700C28—H280.9300
C7—S2—C8102.79 (11)C11—C12—H12120.2
C21—S4—C22102.13 (11)C12—C13—C14120.3 (3)
C1—N1—C4116.0 (2)C12—C13—H13119.8
C2—N2—C3115.1 (3)C14—C13—H13119.8
C5—N3—N4118.6 (2)C13—C14—C9120.7 (3)
C7—N4—N3117.9 (2)C13—C14—H14119.7
C7—N4—H4N121.0C9—C14—H14119.7
N3—N4—H4N121.0N5—C15—C16120.0 (2)
C18—N5—C15115.9 (2)N5—C15—C19117.5 (2)
C16—N6—C17115.0 (3)C16—C15—C19122.4 (2)
C19—N7—N8118.4 (2)N6—C16—C15123.6 (3)
C21—N8—N7118.8 (2)N6—C16—H16118.2
C21—N8—H8N120.6C15—C16—H16118.2
N7—N8—H8N120.6N6—C17—C18122.3 (3)
N1—C1—C2119.9 (2)N6—C17—H17118.8
N1—C1—C5118.0 (2)C18—C17—H17118.8
C2—C1—C5122.1 (2)N5—C18—C17123.2 (3)
N2—C2—C1123.7 (3)N5—C18—H18118.4
N2—C2—H2118.1C17—C18—H18118.4
C1—C2—H2118.1N7—C19—C15114.5 (2)
N2—C3—C4122.0 (3)N7—C19—C20125.4 (2)
N2—C3—H3119.0C15—C19—C20120.1 (2)
C4—C3—H3119.0C19—C20—H20A109.5
N1—C4—C3123.2 (3)C19—C20—H20B109.5
N1—C4—H4118.4H20A—C20—H20B109.5
C3—C4—H4118.4C19—C20—H20C109.5
N3—C5—C1113.9 (2)H20A—C20—H20C109.5
N3—C5—C6125.6 (2)H20B—C20—H20C109.5
C1—C5—C6120.5 (2)N8—C21—S3120.95 (19)
C5—C6—H6A109.5N8—C21—S4113.05 (18)
C5—C6—H6B109.5S3—C21—S4126.01 (14)
H6A—C6—H6B109.5C23—C22—S4108.01 (16)
C5—C6—H6C109.5C23—C22—H22A110.1
H6A—C6—H6C109.5S4—C22—H22A110.1
H6B—C6—H6C109.5C23—C22—H22B110.1
N4—C7—S1121.67 (19)S4—C22—H22B110.1
N4—C7—S2112.47 (18)H22A—C22—H22B108.4
S1—C7—S2125.85 (14)C28—C23—C24117.9 (2)
C9—C8—S2107.72 (16)C28—C23—C22121.3 (2)
C9—C8—H8A110.2C24—C23—C22120.8 (2)
S2—C8—H8A110.2C25—C24—C23120.8 (2)
C9—C8—H8B110.2C25—C24—H24119.6
S2—C8—H8B110.2C23—C24—H24119.6
H8A—C8—H8B108.5C26—C25—C24120.2 (2)
C10—C9—C14118.4 (2)C26—C25—H25119.9
C10—C9—C8120.3 (3)C24—C25—H25119.9
C14—C9—C8121.3 (2)C25—C26—C27119.7 (3)
C11—C10—C9120.6 (3)C25—C26—H26120.1
C11—C10—H10119.7C27—C26—H26120.1
C9—C10—H10119.7C26—C27—C28120.1 (3)
C10—C11—C12120.4 (3)C26—C27—H27120.0
C10—C11—H11119.8C28—C27—H27120.0
C12—C11—H11119.8C23—C28—C27121.3 (2)
C13—C12—C11119.6 (3)C23—C28—H28119.3
C13—C12—H12120.2C27—C28—H28119.3
D—H···AD—HH···AD···AD—H···A
N4—H4N···S3i0.862.753.611 (2)175
N8—H8N···S1i0.862.773.622 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4N⋯S3i0.862.753.611 (2)175
N8—H8N⋯S1i0.862.773.622 (2)174

Symmetry code: (i) .

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Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23

2.  Benzyl N-[(Z)-(1-methyl-2-sulfanyl-propyl-idene)amino]-carbamodithio-ate.

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