Literature DB >> 23424463

Benzyl N-[(Z)-(1-methyl-2-sulfanyl-propyl-idene)amino]-carbamodithio-ate.

Mohammed Khaled Bin Break1, Sachin Mehta, M Ibrahim M Tahir, Karen A Crouse, Teng-Jin Khoo.   

Abstract

The title compound, C(12)H(16)N(2)S(3), was obtained by the condensation reaction of S-benzyl dithio-carbazate and 3-mercaptobutan-2-one. The phenyl ring and thiol (SH) group are approximately perpendicular [S-C-C-C and N-C-C-S torsion angles = 67.8 (3) and 116.9 (2)°, respectively] to the rest of the mol-ecule. In the crystal, mol-ecules are linked by weak S-H⋯S and N-H⋯S hydrogen bonds, π-π inter-actions between the benzene rings [centroid-centroid distance = 3.823 (2) Å] and C-H⋯π inter-actions.

Entities:  

Year:  2013        PMID: 23424463      PMCID: PMC3569240          DOI: 10.1107/S1600536812051008

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of Schiff base ligands and complexes derived from S-benzyl­dithio­carbazate, see: Hossain et al. (1996 ▶); Tarafder et al. (2002 ▶). For related structures derived from S-benzyl­dithio­carbazate, which exhibit a similar geometry to the title compound, see: Khoo et al. (2005 ▶); How et al. (2007 ▶); Shan et al. (2011 ▶). For the synthesis, see: Tarafder et al. (2002 ▶).

Experimental

Crystal data

C12H16N2S3 M = 284.47 Monoclinic, a = 16.3887 (4) Å b = 8.3136 (2) Å c = 10.1404 (3) Å β = 90.234 (2)° V = 1381.61 (6) Å3 Z = 4 Cu Kα radiation μ = 4.73 mm−1 T = 100 K 0.25 × 0.10 × 0.08 mm

Data collection

Oxford Diffraction Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.31, T max = 0.68 7359 measured reflections 2615 independent reflections 2374 reflections with I > 2σ(I) R int = 0.027 Standard reflections: 0

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.123 S = 0.99 2605 reflections 154 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.60 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812051008/nk2192sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812051008/nk2192Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051008/nk2192Isup3.mol Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812051008/nk2192Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16N2S3F(000) = 600
Mr = 284.47Dx = 1.368 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
a = 16.3887 (4) ÅCell parameters from 3777 reflections
b = 8.3136 (2) Åθ = 4–71°
c = 10.1404 (3) ŵ = 4.73 mm1
β = 90.234 (2)°T = 100 K
V = 1381.61 (6) Å3Plate, yellow
Z = 40.25 × 0.10 × 0.08 mm
Oxford Diffraction Gemini diffractometer2374 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω scansθmax = 71.4°, θmin = 5.4°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)h = −19→20
Tmin = 0.31, Tmax = 0.68k = −10→10
7359 measured reflectionsl = −12→9
2615 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.123 Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.07P)2 + 2.47P], where P = (max(Fo2,0) + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
2605 reflectionsΔρmax = 0.55 e Å3
154 parametersΔρmin = −0.60 e Å3
0 restraints
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat with a nominal stability of 0.1 K.
xyzUiso*/Ueq
S10.09283 (4)0.86651 (8)0.60282 (6)0.0199
C20.14578 (15)0.9210 (3)0.4711 (3)0.0161
S30.25242 (4)0.90367 (8)0.45582 (6)0.0169
C40.28225 (15)0.8290 (3)0.6180 (2)0.0188
C50.37460 (15)0.8307 (3)0.6187 (2)0.0169
C60.41672 (16)0.9417 (3)0.6956 (3)0.0206
C70.50166 (17)0.9473 (4)0.6929 (3)0.0225
C80.54462 (16)0.8430 (4)0.6130 (3)0.0219
C90.50291 (16)0.7324 (3)0.5353 (3)0.0214
C100.41832 (16)0.7260 (3)0.5382 (3)0.0197
N110.11068 (12)0.9875 (3)0.3635 (2)0.0170
N120.16216 (13)1.0374 (3)0.2636 (2)0.0175
C130.13156 (16)1.1118 (3)0.1648 (3)0.0177
C140.19140 (16)1.1704 (3)0.0635 (3)0.0204
S150.17221 (5)1.07040 (10)−0.09485 (8)0.0330
C160.28359 (14)1.1622 (3)0.1108 (3)0.0174
C170.04289 (17)1.1502 (4)0.1460 (3)0.0280
H420.26060.89960.68570.0241*
H410.26100.72010.62900.0236*
H610.38761.01350.74890.0263*
H710.52971.02370.74540.0292*
H810.60200.84720.61200.0276*
H910.53160.66270.48150.0271*
H1010.39100.65050.48500.0248*
H1410.17761.28460.04850.0260*
H1620.31311.20500.04760.0278*
H1610.28911.21820.18580.0279*
H1630.29631.05850.12180.0273*
H1710.03481.19570.06040.0430*
H1730.02591.22800.21110.0430*
H1720.01091.05360.15440.0427*
H1110.05951.01010.36340.0211*
H1510.17360.9172−0.04130.0626*
U11U22U33U12U13U23
S10.0142 (3)0.0288 (4)0.0167 (3)0.0005 (2)0.0001 (2)0.0022 (3)
C20.0139 (12)0.0171 (12)0.0173 (12)−0.0001 (9)−0.0009 (9)−0.0038 (10)
S30.0123 (3)0.0223 (3)0.0159 (3)0.0019 (2)−0.0009 (2)0.0016 (2)
C40.0160 (12)0.0258 (14)0.0146 (12)0.0025 (10)−0.0014 (9)0.0029 (10)
C50.0155 (12)0.0223 (13)0.0130 (11)0.0009 (10)−0.0014 (9)0.0051 (10)
C60.0218 (13)0.0247 (14)0.0154 (13)0.0034 (11)−0.0004 (10)0.0000 (11)
C70.0212 (13)0.0281 (15)0.0182 (13)−0.0022 (11)−0.0040 (10)0.0015 (11)
C80.0145 (12)0.0294 (15)0.0219 (13)0.0000 (11)−0.0016 (10)0.0051 (11)
C90.0201 (13)0.0242 (14)0.0199 (13)0.0043 (11)0.0027 (10)0.0021 (11)
C100.0196 (12)0.0211 (13)0.0183 (13)−0.0012 (10)−0.0021 (10)0.0005 (10)
N110.0113 (9)0.0217 (11)0.0179 (11)0.0009 (8)−0.0003 (8)0.0015 (9)
N120.0157 (10)0.0176 (11)0.0191 (11)−0.0008 (8)0.0001 (8)0.0009 (9)
C130.0179 (13)0.0184 (12)0.0167 (12)0.0003 (10)0.0001 (10)−0.0012 (10)
C140.0189 (13)0.0195 (13)0.0229 (13)−0.0004 (10)−0.0007 (10)0.0036 (11)
S150.0372 (4)0.0348 (4)0.0269 (4)0.0010 (3)0.0047 (3)0.0019 (3)
C160.0076 (11)0.0178 (13)0.0269 (14)−0.0035 (9)0.0069 (9)0.0070 (10)
C170.0201 (14)0.0412 (18)0.0225 (14)0.0051 (12)−0.0010 (11)0.0102 (13)
S1—C21.659 (3)C10—H1010.941
C2—S31.761 (3)N11—N121.384 (3)
C2—N111.350 (3)N11—H1110.859
S3—C41.823 (3)N12—C131.278 (3)
C4—C51.514 (3)C13—C141.504 (4)
C4—H420.972C13—C171.499 (4)
C4—H410.976C14—S151.834 (3)
C5—C61.390 (4)C14—C161.585 (3)
C5—C101.393 (4)C14—H1410.988
C6—C71.393 (4)S15—H1511.385
C6—H610.937C16—H1620.880
C7—C81.382 (4)C16—H1610.896
C7—H710.947C16—H1630.894
C8—C91.389 (4)C17—H1710.955
C8—H810.941C17—H1730.966
C9—C101.388 (4)C17—H1720.963
C9—H910.926
S1—C2—S3124.83 (15)C9—C10—H101119.2
S1—C2—N11122.70 (19)C2—N11—N12117.1 (2)
S3—C2—N11112.46 (19)C2—N11—H111120.2
C2—S3—C4102.18 (12)N12—N11—H111122.1
S3—C4—C5105.39 (17)N11—N12—C13118.7 (2)
S3—C4—H42109.5N12—C13—C14115.9 (2)
C5—C4—H42111.0N12—C13—C17125.4 (2)
S3—C4—H41108.9C14—C13—C17118.6 (2)
C5—C4—H41111.4C13—C14—S15109.95 (18)
H42—C4—H41110.4C13—C14—C16113.7 (2)
C4—C5—C6120.2 (2)S15—C14—C16113.94 (19)
C4—C5—C10120.5 (2)C13—C14—H141105.5
C6—C5—C10119.2 (2)S15—C14—H141105.2
C5—C6—C7120.4 (3)C16—C14—H141107.8
C5—C6—H61119.6C14—S15—H15194.1
C7—C6—H61120.1C14—C16—H162106.7
C6—C7—C8120.1 (3)C14—C16—H161109.1
C6—C7—H71119.7H162—C16—H161110.7
C8—C7—H71120.2C14—C16—H163107.4
C7—C8—C9119.8 (2)H162—C16—H163110.6
C7—C8—H81119.6H161—C16—H163112.0
C9—C8—H81120.6C13—C17—H171109.3
C8—C9—C10120.2 (3)C13—C17—H173109.8
C8—C9—H91120.0H171—C17—H173108.4
C10—C9—H91119.8C13—C17—H172109.8
C5—C10—C9120.3 (2)H171—C17—H172109.7
C5—C10—H101120.5H173—C17—H172109.8
D—H···AD—HH···AD···AD—H···A
S15—H151···S3i1.382.964.186 (1)146
N11—H111···S1ii0.862.723.567 (2)168
C7—H71···Cgiii0.952.973.827 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C5–C10 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
S15—H151⋯S3i 1.382.964.186 (1)146
N11—H111⋯S1ii 0.862.723.567 (2)168
C7—H71⋯Cg iii 0.952.973.827 (3)152

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  Benzyl 3-[(E)-1-(pyrazin-2-yl)ethyl-idene]dithio-carbazate.

Authors:  Shang Shan; Yan-Lan Huang; Han-Qi Guo; Deng-Feng Li; Jian Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  1 in total

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