| Literature DB >> 22969591 |
Bing Liu, João P C Tomé, Luís Cunha-Silva, Filipe A Almeida Paz.
Abstract
The asymmetric unit of the title compound, C(4)H(5)N(7), comprises two independent but virtually superimposable mol-ecules. Each mol-ecule is planar with the dihedral angles between the five-membered rings being 2.8 (3) and 2.1 (3)°. The crystal structure is formed by an extensive network of relatively strong N-H⋯N hydrogen-bond inter-actions. Individual mol-ecules are arranged into supra-molecular zigzag chains running parallel to [001] by way of the strongest N-H⋯N inter-actions. Adjacent chains are inter-connected by rather long (D⋯A distances range from ca 3.00 to 3.03 Å) but highly directional (inter-action angles above ca 173°) hydrogen bonds forming a supra-molecular layer in the bc plane.Entities:
Year: 2012 PMID: 22969591 PMCID: PMC3435720 DOI: 10.1107/S1600536812034691
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H5N7 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 823 reflections |
| θ = 2.7–21.7° | |
| µ = 0.12 mm−1 | |
| β = 112.914 (12)° | Prism, yellow |
| 0.10 × 0.05 × 0.03 mm | |
| Bruker X8 Kappa CCD APEXII diffractometer | 2192 independent reflections |
| Radiation source: fine-focus sealed tube | 975 reflections with |
| Graphite monochromator | |
| ω / φ scans | θmax = 25.0°, θmin = 3.7° |
| Absorption correction: multi-scan ( | |
| 8003 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2192 reflections | (Δ/σ)max < 0.001 |
| 217 parameters | Δρmax = 0.52 e Å−3 |
| 8 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.6176 (4) | −0.3457 (6) | −0.1686 (3) | 0.0465 (13) | |
| H1B | 0.625 (4) | −0.477 (4) | −0.140 (3) | 0.070* | |
| H1A | 0.625 (4) | −0.341 (7) | −0.2198 (16) | 0.070* | |
| N2 | 0.6244 (3) | 0.0473 (7) | −0.1487 (3) | 0.0431 (12) | |
| H2 | 0.624 (4) | 0.106 (9) | −0.1987 (18) | 0.065* | |
| N4 | 0.6274 (3) | 0.2015 (6) | −0.0855 (3) | 0.0443 (12) | |
| C2 | 0.6268 (4) | 0.0647 (8) | −0.0238 (3) | 0.0346 (12) | |
| N3 | 0.6228 (3) | −0.1582 (6) | −0.0393 (2) | 0.0326 (10) | |
| C1 | 0.6217 (4) | −0.1618 (8) | −0.1201 (3) | 0.0368 (12) | |
| N6 | 0.6346 (3) | 0.1685 (7) | 0.1884 (3) | 0.0477 (12) | |
| N7 | 0.6317 (3) | 0.3877 (7) | 0.1576 (3) | 0.0493 (12) | |
| C3 | 0.6290 (4) | 0.3720 (8) | 0.0783 (3) | 0.0449 (14) | |
| H3 | 0.6272 | 0.4936 | 0.0426 | 0.054* | |
| N5 | 0.6292 (3) | 0.1502 (6) | 0.0556 (2) | 0.0339 (10) | |
| C4 | 0.6328 (4) | 0.0325 (9) | 0.1264 (3) | 0.0420 (13) | |
| H4 | 0.6338 | −0.1238 | 0.1302 | 0.050* | |
| N10 | 0.6263 (3) | 0.2101 (6) | 0.3519 (3) | 0.0417 (12) | |
| H10 | 0.636 (4) | 0.166 (9) | 0.3037 (19) | 0.063* | |
| N11 | 0.6323 (3) | 0.0579 (6) | 0.4167 (3) | 0.0383 (11) | |
| C6 | 0.6227 (3) | 0.1927 (7) | 0.4747 (3) | 0.0312 (11) | |
| N9 | 0.6124 (3) | 0.4162 (6) | 0.4575 (3) | 0.0350 (10) | |
| C5 | 0.6144 (4) | 0.4198 (8) | 0.3774 (3) | 0.0341 (12) | |
| N14 | 0.6344 (3) | −0.1263 (7) | 0.6590 (3) | 0.0441 (11) | |
| N13 | 0.6262 (3) | 0.0938 (7) | 0.6861 (3) | 0.0487 (12) | |
| C7 | 0.6202 (4) | 0.2269 (8) | 0.6221 (3) | 0.0440 (14) | |
| H7 | 0.6136 | 0.3827 | 0.6229 | 0.053* | |
| N12 | 0.6250 (3) | 0.1088 (6) | 0.5547 (2) | 0.0342 (10) | |
| C8 | 0.6339 (4) | −0.1094 (8) | 0.5814 (3) | 0.0411 (13) | |
| H8 | 0.6390 | −0.2311 | 0.5480 | 0.049* | |
| N8 | 0.6036 (4) | 0.6025 (7) | 0.3278 (3) | 0.0509 (13) | |
| H8A | 0.605 (4) | 0.589 (7) | 0.2746 (15) | 0.076* | |
| H8B | 0.615 (4) | 0.737 (4) | 0.355 (3) | 0.076* |
| N1 | 0.083 (3) | 0.031 (2) | 0.035 (3) | 0.001 (2) | 0.033 (3) | −0.005 (2) |
| N2 | 0.084 (3) | 0.030 (2) | 0.026 (3) | −0.003 (2) | 0.032 (3) | −0.001 (2) |
| N4 | 0.083 (3) | 0.033 (2) | 0.028 (3) | −0.001 (2) | 0.033 (2) | 0.000 (2) |
| C2 | 0.045 (3) | 0.036 (3) | 0.026 (3) | 0.004 (2) | 0.017 (3) | −0.002 (2) |
| N3 | 0.051 (3) | 0.030 (2) | 0.022 (2) | 0.0005 (17) | 0.020 (2) | 0.0000 (17) |
| C1 | 0.050 (3) | 0.036 (3) | 0.030 (3) | 0.001 (2) | 0.022 (3) | −0.001 (2) |
| N6 | 0.075 (3) | 0.051 (3) | 0.025 (3) | 0.007 (2) | 0.028 (2) | −0.002 (2) |
| N7 | 0.066 (3) | 0.044 (3) | 0.044 (3) | −0.008 (2) | 0.028 (3) | −0.008 (2) |
| C3 | 0.067 (4) | 0.042 (3) | 0.030 (3) | −0.005 (3) | 0.022 (3) | −0.011 (2) |
| N5 | 0.052 (3) | 0.035 (2) | 0.021 (3) | 0.0012 (19) | 0.022 (2) | −0.0004 (18) |
| C4 | 0.059 (4) | 0.045 (3) | 0.027 (3) | 0.005 (2) | 0.022 (3) | 0.003 (3) |
| N10 | 0.073 (3) | 0.032 (3) | 0.029 (3) | 0.004 (2) | 0.029 (3) | 0.004 (2) |
| N11 | 0.067 (3) | 0.031 (2) | 0.023 (2) | −0.0016 (19) | 0.024 (2) | −0.0013 (19) |
| C6 | 0.043 (3) | 0.033 (3) | 0.022 (3) | 0.000 (2) | 0.017 (2) | 0.002 (2) |
| N9 | 0.055 (3) | 0.029 (2) | 0.026 (2) | 0.0003 (18) | 0.021 (2) | −0.0082 (18) |
| C5 | 0.050 (3) | 0.028 (3) | 0.028 (3) | 0.001 (2) | 0.020 (3) | 0.000 (2) |
| N14 | 0.061 (3) | 0.045 (3) | 0.030 (3) | 0.002 (2) | 0.022 (2) | 0.006 (2) |
| N13 | 0.073 (3) | 0.048 (3) | 0.029 (3) | −0.002 (2) | 0.024 (2) | 0.003 (2) |
| C7 | 0.069 (4) | 0.038 (3) | 0.033 (3) | −0.001 (2) | 0.029 (3) | 0.000 (3) |
| N12 | 0.052 (3) | 0.030 (2) | 0.024 (3) | −0.0001 (18) | 0.020 (2) | −0.0002 (18) |
| C8 | 0.059 (4) | 0.039 (3) | 0.032 (3) | 0.003 (2) | 0.026 (3) | 0.004 (2) |
| N8 | 0.097 (4) | 0.030 (2) | 0.036 (3) | 0.001 (2) | 0.037 (3) | 0.002 (2) |
| N1—C1 | 1.345 (6) | N10—C5 | 1.346 (6) |
| N1—H1B | 0.900 (5) | N10—N11 | 1.385 (5) |
| N1—H1A | 0.899 (5) | N10—H10 | 0.901 (5) |
| N2—C1 | 1.335 (6) | N11—C6 | 1.299 (5) |
| N2—N4 | 1.382 (5) | C6—N9 | 1.353 (5) |
| N2—H2 | 0.899 (5) | C6—N12 | 1.410 (5) |
| N4—C2 | 1.312 (6) | N9—C5 | 1.344 (6) |
| C2—N3 | 1.346 (5) | C5—N8 | 1.336 (6) |
| C2—N5 | 1.403 (5) | N14—C8 | 1.293 (6) |
| N3—C1 | 1.337 (6) | N14—N13 | 1.401 (5) |
| N6—C4 | 1.303 (6) | N13—C7 | 1.302 (6) |
| N6—N7 | 1.394 (6) | C7—N12 | 1.346 (6) |
| N7—C3 | 1.307 (6) | C7—H7 | 0.9300 |
| C3—N5 | 1.370 (6) | N12—C8 | 1.360 (6) |
| C3—H3 | 0.9300 | C8—H8 | 0.9300 |
| N5—C4 | 1.353 (6) | N8—H8A | 0.899 (5) |
| C4—H4 | 0.9300 | N8—H8B | 0.900 (5) |
| C1—N1—H1B | 114 (3) | C5—N10—N11 | 109.6 (4) |
| C1—N1—H1A | 123 (3) | C5—N10—H10 | 129 (4) |
| H1B—N1—H1A | 120 (4) | N11—N10—H10 | 121 (4) |
| C1—N2—N4 | 110.0 (4) | C6—N11—N10 | 100.6 (4) |
| C1—N2—H2 | 134 (4) | N11—C6—N9 | 118.7 (4) |
| N4—N2—H2 | 116 (4) | N11—C6—N12 | 120.8 (4) |
| C2—N4—N2 | 100.2 (4) | N9—C6—N12 | 120.5 (4) |
| N4—C2—N3 | 118.1 (4) | C5—N9—C6 | 100.6 (4) |
| N4—C2—N5 | 120.5 (4) | N8—C5—N9 | 125.8 (4) |
| N3—C2—N5 | 121.4 (4) | N8—C5—N10 | 123.7 (4) |
| C1—N3—C2 | 101.1 (4) | N9—C5—N10 | 110.5 (4) |
| N2—C1—N3 | 110.6 (4) | C8—N14—N13 | 106.2 (4) |
| N2—C1—N1 | 122.8 (5) | C7—N13—N14 | 106.9 (4) |
| N3—C1—N1 | 126.6 (5) | N13—C7—N12 | 110.9 (4) |
| C4—N6—N7 | 107.4 (4) | N13—C7—H7 | 124.5 |
| C3—N7—N6 | 106.8 (4) | N12—C7—H7 | 124.5 |
| N7—C3—N5 | 110.1 (5) | C7—N12—C8 | 104.6 (4) |
| N7—C3—H3 | 124.9 | C7—N12—C6 | 127.8 (4) |
| N5—C3—H3 | 124.9 | C8—N12—C6 | 127.6 (4) |
| C4—N5—C3 | 105.1 (4) | N14—C8—N12 | 111.4 (4) |
| C4—N5—C2 | 127.7 (4) | N14—C8—H8 | 124.3 |
| C3—N5—C2 | 127.2 (4) | N12—C8—H8 | 124.3 |
| N6—C4—N5 | 110.6 (4) | C5—N8—H8A | 120 (3) |
| N6—C4—H4 | 124.7 | C5—N8—H8B | 117 (3) |
| N5—C4—H4 | 124.7 | H8A—N8—H8B | 120 (4) |
| C1—N2—N4—C2 | 0.4 (5) | C5—N10—N11—C6 | 0.3 (5) |
| N2—N4—C2—N3 | −0.7 (6) | N10—N11—C6—N9 | −0.9 (6) |
| N2—N4—C2—N5 | −179.9 (4) | N10—N11—C6—N12 | −179.6 (4) |
| N4—C2—N3—C1 | 0.7 (6) | N11—C6—N9—C5 | 1.0 (6) |
| N5—C2—N3—C1 | 180.0 (4) | N12—C6—N9—C5 | 179.8 (4) |
| N4—N2—C1—N3 | 0.0 (6) | C6—N9—C5—N8 | 177.7 (5) |
| N4—N2—C1—N1 | 179.4 (4) | C6—N9—C5—N10 | −0.7 (5) |
| C2—N3—C1—N2 | −0.4 (5) | N11—N10—C5—N8 | −178.2 (5) |
| C2—N3—C1—N1 | −179.8 (5) | N11—N10—C5—N9 | 0.3 (5) |
| C4—N6—N7—C3 | −0.4 (5) | C8—N14—N13—C7 | 0.7 (5) |
| N6—N7—C3—N5 | 0.4 (6) | N14—N13—C7—N12 | −0.6 (6) |
| N7—C3—N5—C4 | −0.3 (5) | N13—C7—N12—C8 | 0.3 (6) |
| N7—C3—N5—C2 | 180.0 (4) | N13—C7—N12—C6 | −178.9 (4) |
| N4—C2—N5—C4 | −177.5 (5) | N11—C6—N12—C7 | 177.2 (4) |
| N3—C2—N5—C4 | 3.3 (7) | N9—C6—N12—C7 | −1.5 (7) |
| N4—C2—N5—C3 | 2.1 (7) | N11—C6—N12—C8 | −1.8 (7) |
| N3—C2—N5—C3 | −177.1 (4) | N9—C6—N12—C8 | 179.4 (4) |
| N7—N6—C4—N5 | 0.2 (5) | N13—N14—C8—N12 | −0.5 (5) |
| C3—N5—C4—N6 | 0.0 (5) | C7—N12—C8—N14 | 0.2 (5) |
| C2—N5—C4—N6 | 179.7 (4) | C6—N12—C8—N14 | 179.4 (4) |
| H··· | ||||
| N1—H1 | 0.90 (1) | 2.43 (2) | 3.239 (6) | 150 (4) |
| N1—H1 | 0.90 (1) | 2.11 (1) | 3.002 (6) | 173 (5) |
| N2—H2···N13i | 0.90 (1) | 1.93 (2) | 2.772 (6) | 155 (5) |
| N8—H8 | 0.90 (1) | 2.43 (2) | 3.264 (6) | 154 (4) |
| N8—H8 | 0.90 (1) | 2.14 (1) | 3.034 (6) | 176 (5) |
| N10—H10···N6 | 0.90 (1) | 1.91 (2) | 2.777 (6) | 161 (5) |
| π-π interaction | d(Cg···Cg) |
| Cg(1)···Cg(2)i | 3.580 (3) |
| Cg(3)···Cg(4)ii | 3.700 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.90 (1) | 2.43 (2) | 3.239 (6) | 150 (4) |
| N1—H1 | 0.90 (1) | 2.11 (1) | 3.002 (6) | 173 (5) |
| N2—H2⋯N13i | 0.90 (1) | 1.93 (2) | 2.772 (6) | 155 (5) |
| N8—H8 | 0.90 (1) | 2.43 (2) | 3.264 (6) | 154 (4) |
| N8—H8 | 0.90 (1) | 2.14 (1) | 3.034 (6) | 176 (5) |
| N10—H10⋯N6 | 0.90 (1) | 1.91 (2) | 2.777 (6) | 161 (5) |
Symmetry codes: (i) ; (ii) ; (iii) .