Literature DB >> 22969591

5-Amino-3-(4H-1,2,4-triazol-4-yl)-1H-1,2,4-triazole.

Bing Liu, João P C Tomé, Luís Cunha-Silva, Filipe A Almeida Paz.   

Abstract

The asymmetric unit of the title compound, C(4)H(5)N(7), comprises two independent but virtually superimposable mol-ecules. Each mol-ecule is planar with the dihedral angles between the five-membered rings being 2.8 (3) and 2.1 (3)°. The crystal structure is formed by an extensive network of relatively strong N-H⋯N hydrogen-bond inter-actions. Individual mol-ecules are arranged into supra-molecular zigzag chains running parallel to [001] by way of the strongest N-H⋯N inter-actions. Adjacent chains are inter-connected by rather long (D⋯A distances range from ca 3.00 to 3.03 Å) but highly directional (inter-action angles above ca 173°) hydrogen bonds forming a supra-molecular layer in the bc plane.

Entities:  

Year:  2012        PMID: 22969591      PMCID: PMC3435720          DOI: 10.1107/S1600536812034691

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 1-butyl-3-methyl­imidazolium bromide and 1,2-diformyl­hydrazine, see: Liu et al. (2007 ▶); Parnham & Morris (2006 ▶). For the use of triazole mol­ecules, see: Wang et al. (2012 ▶); Zhang et al. (2009 ▶). For previous research studies on crystal engineering approaches, see: Fernandes et al. (2011 ▶); Silva et al. (2011 ▶); Amarante et al. (2009 ▶); Paz & Klinowski (2007 ▶). For graph-set notation, see: Grell et al. (1999 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C4H5N7 M = 151.15 Monoclinic, a = 13.765 (3) Å b = 5.9378 (12) Å c = 16.635 (4) Å β = 112.914 (12)° V = 1252.4 (5) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.10 × 0.05 × 0.03 mm

Data collection

Bruker X8 Kappa CCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.988, T max = 0.996 8003 measured reflections 2192 independent reflections 975 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.226 S = 0.96 2192 reflections 217 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.52 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034691/tk5136sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034691/tk5136Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034691/tk5136Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536812034691/tk5136Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H5N7F(000) = 624
Mr = 151.15Dx = 1.603 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 823 reflections
a = 13.765 (3) Åθ = 2.7–21.7°
b = 5.9378 (12) ŵ = 0.12 mm1
c = 16.635 (4) ÅT = 293 K
β = 112.914 (12)°Prism, yellow
V = 1252.4 (5) Å30.10 × 0.05 × 0.03 mm
Z = 8
Bruker X8 Kappa CCD APEXII diffractometer2192 independent reflections
Radiation source: fine-focus sealed tube975 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.079
ω / φ scansθmax = 25.0°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −16→16
Tmin = 0.988, Tmax = 0.996k = −7→5
8003 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.226H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.1189P)2] where P = (Fo2 + 2Fc2)/3
2192 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.52 e Å3
8 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6176 (4)−0.3457 (6)−0.1686 (3)0.0465 (13)
H1B0.625 (4)−0.477 (4)−0.140 (3)0.070*
H1A0.625 (4)−0.341 (7)−0.2198 (16)0.070*
N20.6244 (3)0.0473 (7)−0.1487 (3)0.0431 (12)
H20.624 (4)0.106 (9)−0.1987 (18)0.065*
N40.6274 (3)0.2015 (6)−0.0855 (3)0.0443 (12)
C20.6268 (4)0.0647 (8)−0.0238 (3)0.0346 (12)
N30.6228 (3)−0.1582 (6)−0.0393 (2)0.0326 (10)
C10.6217 (4)−0.1618 (8)−0.1201 (3)0.0368 (12)
N60.6346 (3)0.1685 (7)0.1884 (3)0.0477 (12)
N70.6317 (3)0.3877 (7)0.1576 (3)0.0493 (12)
C30.6290 (4)0.3720 (8)0.0783 (3)0.0449 (14)
H30.62720.49360.04260.054*
N50.6292 (3)0.1502 (6)0.0556 (2)0.0339 (10)
C40.6328 (4)0.0325 (9)0.1264 (3)0.0420 (13)
H40.6338−0.12380.13020.050*
N100.6263 (3)0.2101 (6)0.3519 (3)0.0417 (12)
H100.636 (4)0.166 (9)0.3037 (19)0.063*
N110.6323 (3)0.0579 (6)0.4167 (3)0.0383 (11)
C60.6227 (3)0.1927 (7)0.4747 (3)0.0312 (11)
N90.6124 (3)0.4162 (6)0.4575 (3)0.0350 (10)
C50.6144 (4)0.4198 (8)0.3774 (3)0.0341 (12)
N140.6344 (3)−0.1263 (7)0.6590 (3)0.0441 (11)
N130.6262 (3)0.0938 (7)0.6861 (3)0.0487 (12)
C70.6202 (4)0.2269 (8)0.6221 (3)0.0440 (14)
H70.61360.38270.62290.053*
N120.6250 (3)0.1088 (6)0.5547 (2)0.0342 (10)
C80.6339 (4)−0.1094 (8)0.5814 (3)0.0411 (13)
H80.6390−0.23110.54800.049*
N80.6036 (4)0.6025 (7)0.3278 (3)0.0509 (13)
H8A0.605 (4)0.589 (7)0.2746 (15)0.076*
H8B0.615 (4)0.737 (4)0.355 (3)0.076*
U11U22U33U12U13U23
N10.083 (3)0.031 (2)0.035 (3)0.001 (2)0.033 (3)−0.005 (2)
N20.084 (3)0.030 (2)0.026 (3)−0.003 (2)0.032 (3)−0.001 (2)
N40.083 (3)0.033 (2)0.028 (3)−0.001 (2)0.033 (2)0.000 (2)
C20.045 (3)0.036 (3)0.026 (3)0.004 (2)0.017 (3)−0.002 (2)
N30.051 (3)0.030 (2)0.022 (2)0.0005 (17)0.020 (2)0.0000 (17)
C10.050 (3)0.036 (3)0.030 (3)0.001 (2)0.022 (3)−0.001 (2)
N60.075 (3)0.051 (3)0.025 (3)0.007 (2)0.028 (2)−0.002 (2)
N70.066 (3)0.044 (3)0.044 (3)−0.008 (2)0.028 (3)−0.008 (2)
C30.067 (4)0.042 (3)0.030 (3)−0.005 (3)0.022 (3)−0.011 (2)
N50.052 (3)0.035 (2)0.021 (3)0.0012 (19)0.022 (2)−0.0004 (18)
C40.059 (4)0.045 (3)0.027 (3)0.005 (2)0.022 (3)0.003 (3)
N100.073 (3)0.032 (3)0.029 (3)0.004 (2)0.029 (3)0.004 (2)
N110.067 (3)0.031 (2)0.023 (2)−0.0016 (19)0.024 (2)−0.0013 (19)
C60.043 (3)0.033 (3)0.022 (3)0.000 (2)0.017 (2)0.002 (2)
N90.055 (3)0.029 (2)0.026 (2)0.0003 (18)0.021 (2)−0.0082 (18)
C50.050 (3)0.028 (3)0.028 (3)0.001 (2)0.020 (3)0.000 (2)
N140.061 (3)0.045 (3)0.030 (3)0.002 (2)0.022 (2)0.006 (2)
N130.073 (3)0.048 (3)0.029 (3)−0.002 (2)0.024 (2)0.003 (2)
C70.069 (4)0.038 (3)0.033 (3)−0.001 (2)0.029 (3)0.000 (3)
N120.052 (3)0.030 (2)0.024 (3)−0.0001 (18)0.020 (2)−0.0002 (18)
C80.059 (4)0.039 (3)0.032 (3)0.003 (2)0.026 (3)0.004 (2)
N80.097 (4)0.030 (2)0.036 (3)0.001 (2)0.037 (3)0.002 (2)
N1—C11.345 (6)N10—C51.346 (6)
N1—H1B0.900 (5)N10—N111.385 (5)
N1—H1A0.899 (5)N10—H100.901 (5)
N2—C11.335 (6)N11—C61.299 (5)
N2—N41.382 (5)C6—N91.353 (5)
N2—H20.899 (5)C6—N121.410 (5)
N4—C21.312 (6)N9—C51.344 (6)
C2—N31.346 (5)C5—N81.336 (6)
C2—N51.403 (5)N14—C81.293 (6)
N3—C11.337 (6)N14—N131.401 (5)
N6—C41.303 (6)N13—C71.302 (6)
N6—N71.394 (6)C7—N121.346 (6)
N7—C31.307 (6)C7—H70.9300
C3—N51.370 (6)N12—C81.360 (6)
C3—H30.9300C8—H80.9300
N5—C41.353 (6)N8—H8A0.899 (5)
C4—H40.9300N8—H8B0.900 (5)
C1—N1—H1B114 (3)C5—N10—N11109.6 (4)
C1—N1—H1A123 (3)C5—N10—H10129 (4)
H1B—N1—H1A120 (4)N11—N10—H10121 (4)
C1—N2—N4110.0 (4)C6—N11—N10100.6 (4)
C1—N2—H2134 (4)N11—C6—N9118.7 (4)
N4—N2—H2116 (4)N11—C6—N12120.8 (4)
C2—N4—N2100.2 (4)N9—C6—N12120.5 (4)
N4—C2—N3118.1 (4)C5—N9—C6100.6 (4)
N4—C2—N5120.5 (4)N8—C5—N9125.8 (4)
N3—C2—N5121.4 (4)N8—C5—N10123.7 (4)
C1—N3—C2101.1 (4)N9—C5—N10110.5 (4)
N2—C1—N3110.6 (4)C8—N14—N13106.2 (4)
N2—C1—N1122.8 (5)C7—N13—N14106.9 (4)
N3—C1—N1126.6 (5)N13—C7—N12110.9 (4)
C4—N6—N7107.4 (4)N13—C7—H7124.5
C3—N7—N6106.8 (4)N12—C7—H7124.5
N7—C3—N5110.1 (5)C7—N12—C8104.6 (4)
N7—C3—H3124.9C7—N12—C6127.8 (4)
N5—C3—H3124.9C8—N12—C6127.6 (4)
C4—N5—C3105.1 (4)N14—C8—N12111.4 (4)
C4—N5—C2127.7 (4)N14—C8—H8124.3
C3—N5—C2127.2 (4)N12—C8—H8124.3
N6—C4—N5110.6 (4)C5—N8—H8A120 (3)
N6—C4—H4124.7C5—N8—H8B117 (3)
N5—C4—H4124.7H8A—N8—H8B120 (4)
C1—N2—N4—C20.4 (5)C5—N10—N11—C60.3 (5)
N2—N4—C2—N3−0.7 (6)N10—N11—C6—N9−0.9 (6)
N2—N4—C2—N5−179.9 (4)N10—N11—C6—N12−179.6 (4)
N4—C2—N3—C10.7 (6)N11—C6—N9—C51.0 (6)
N5—C2—N3—C1180.0 (4)N12—C6—N9—C5179.8 (4)
N4—N2—C1—N30.0 (6)C6—N9—C5—N8177.7 (5)
N4—N2—C1—N1179.4 (4)C6—N9—C5—N10−0.7 (5)
C2—N3—C1—N2−0.4 (5)N11—N10—C5—N8−178.2 (5)
C2—N3—C1—N1−179.8 (5)N11—N10—C5—N90.3 (5)
C4—N6—N7—C3−0.4 (5)C8—N14—N13—C70.7 (5)
N6—N7—C3—N50.4 (6)N14—N13—C7—N12−0.6 (6)
N7—C3—N5—C4−0.3 (5)N13—C7—N12—C80.3 (6)
N7—C3—N5—C2180.0 (4)N13—C7—N12—C6−178.9 (4)
N4—C2—N5—C4−177.5 (5)N11—C6—N12—C7177.2 (4)
N3—C2—N5—C43.3 (7)N9—C6—N12—C7−1.5 (7)
N4—C2—N5—C32.1 (7)N11—C6—N12—C8−1.8 (7)
N3—C2—N5—C3−177.1 (4)N9—C6—N12—C8179.4 (4)
N7—N6—C4—N50.2 (5)N13—N14—C8—N12−0.5 (5)
C3—N5—C4—N60.0 (5)C7—N12—C8—N140.2 (5)
C2—N5—C4—N6179.7 (4)C6—N12—C8—N14179.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N14i0.90 (1)2.43 (2)3.239 (6)150 (4)
N1—H1B···N4ii0.90 (1)2.11 (1)3.002 (6)173 (5)
N2—H2···N13i0.90 (1)1.93 (2)2.772 (6)155 (5)
N8—H8A···N70.90 (1)2.43 (2)3.264 (6)154 (4)
N8—H8B···N11iii0.90 (1)2.14 (1)3.034 (6)176 (5)
N10—H10···N60.90 (1)1.91 (2)2.777 (6)161 (5)
π-π interactiond(Cg···Cg)
Cg(1)···Cg(2)i3.580 (3)
Cg(3)···Cg(4)ii3.700 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯N14i 0.90 (1)2.43 (2)3.239 (6)150 (4)
N1—H1B⋯N4ii 0.90 (1)2.11 (1)3.002 (6)173 (5)
N2—H2⋯N13i 0.90 (1)1.93 (2)2.772 (6)155 (5)
N8—H8A⋯N70.90 (1)2.43 (2)3.264 (6)154 (4)
N8—H8B⋯N11iii 0.90 (1)2.14 (1)3.034 (6)176 (5)
N10—H10⋯N60.90 (1)1.91 (2)2.777 (6)161 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

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6.  5-Amino-1H-1,2,4-triazol-4-ium-3-carboxyl-ate hemihydrate.

Authors:  José A Fernandes; Bing Liu; João P C Tomé; Luís Cunha-Silva; Filipe A Almeida Paz
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