Literature DB >> 22091042

Morpholin-4-ium morpholine-4-carbo-dithio-ate.

Ana C Mafud1, Edgar A Sanches, Maria Teresa Gambardella.   

Abstract

The title compound, C(4)H(10)NO(+)·C(5)H(8)NOS(2) (-), is built up of a morpholinium cation and a dithio-carbamate anion. In the crystal, two structurally independent formula units are linked via N-H⋯S hydrogen bonds, forming an inversion dimer, with graph-set motif R(4) (4)(12).

Entities:  

Year:  2011        PMID: 22091042      PMCID: PMC3213463          DOI: 10.1107/S1600536811026286

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar compounds, see: Wahlberg (1979 ▶, 1980 ▶, 1981 ▶); Mafud & Gambardella (2011a ▶,b ▶). For graph-set analysis, see: Bernstein et al. (1995 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C4H10NOC5H8NOS2 M = 250.37 Monoclinic, a = 7.938 (5) Å b = 18.3232 (15) Å c = 8.8260 (5) Å β = 110.021 (5)° V = 1206.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.43 mm−1 T = 290 K 0.3 × 0.15 × 0.15 mm

Data collection

Enraf–Nonius TurboCAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.795, T max = 0.902 3705 measured reflections 3487 independent reflections 2021 reflections with I > 2σ(I) R int = 0.041 3 standard reflections every 120 min intensity decay: 5%

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.145 S = 1.00 3487 reflections 190 parameters All H-atom parameters refined Δρmax = 0.56 e Å−3 Δρmin = −0.39 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1989) ▶; cell refinement: CAD-4 EXPRESS ▶; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811026286/su2285sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026286/su2285Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026286/su2285Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO+·C5H8NOS2F(000) = 536
Mr = 250.37Dx = 1.379 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 15 reflections
a = 7.938 (5) Åθ = 5.5–15.9°
b = 18.3232 (15) ŵ = 0.43 mm1
c = 8.8260 (5) ÅT = 290 K
β = 110.021 (5)°Prism, colourless
V = 1206.2 (8) Å30.3 × 0.15 × 0.15 mm
Z = 4
Enraf–Nonius TurboCAD-4 diffractometerRint = 0.041
graphiteθmax = 30.0°, θmin = 2.7°
non–profiled ω/2θ scansh = 0→11
Absorption correction: ψ scan (North et al., 1968)k = 0→25
Tmin = 0.795, Tmax = 0.902l = −12→11
3705 measured reflections3 standard reflections every 120 min
3487 independent reflections intensity decay: 5%
2021 reflections with I > 2σ(I)
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145All H-atom parameters refined
S = 1.00w = 1/[σ2(Fo2) + (0.0759P)2] where P = (Fo2 + 2Fc2)/3
3487 reflections(Δ/σ)max = 0.004
190 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.20657 (9)0.07843 (4)0.84253 (7)0.03827 (19)
S20.34115 (10)−0.02991 (4)0.66044 (8)0.0448 (2)
O20.7186 (3)0.20279 (12)0.8050 (3)0.0558 (5)
O10.1390 (3)0.19488 (11)0.2852 (2)0.0547 (6)
N10.1685 (3)0.09147 (11)0.5323 (2)0.0344 (5)
N20.6455 (3)0.09075 (12)0.9933 (3)0.0352 (5)
C10.2314 (3)0.04987 (13)0.6648 (3)0.0301 (5)
C20.1739 (4)0.06872 (15)0.3746 (3)0.0425 (6)
C30.2422 (4)0.13083 (16)0.2981 (4)0.0458 (7)
C40.0698 (4)0.15994 (15)0.5227 (3)0.0390 (6)
C50.1441 (5)0.21801 (15)0.4412 (4)0.0472 (7)
C60.7585 (5)0.07751 (17)0.8933 (4)0.0478 (7)
C70.7033 (5)0.12905 (18)0.7531 (4)0.0506 (7)
C80.6555 (5)0.16802 (17)1.0443 (4)0.0515 (7)
C90.6074 (5)0.21637 (17)0.8988 (4)0.0556 (8)
H1N0.537 (5)0.079 (2)0.936 (4)0.067*
H2N0.681 (4)0.063 (2)1.085 (4)0.067*
H2A0.050 (4)0.053 (2)0.304 (4)0.067*
H2B0.248 (4)0.027 (2)0.394 (4)0.067*
H3A0.368 (4)0.1441 (19)0.369 (4)0.067*
H3B0.229 (4)0.1177 (19)0.187 (4)0.067*
H4A−0.053 (5)0.1527 (19)0.457 (4)0.067*
H4B0.088 (5)0.1751 (18)0.628 (4)0.067*
H5A0.274 (5)0.2265 (19)0.512 (4)0.067*
H5B0.073 (4)0.261 (2)0.419 (4)0.067*
H6A0.887 (5)0.0884 (19)0.966 (4)0.067*
H6B0.748 (4)0.031 (2)0.863 (4)0.067*
H7A0.582 (5)0.1189 (19)0.685 (4)0.067*
H7B0.786 (4)0.125 (2)0.697 (4)0.067*
H8A0.791 (5)0.1709 (19)1.118 (4)0.067*
H8B0.590 (5)0.1737 (19)1.108 (4)0.067*
H9A0.481 (5)0.2048 (19)0.826 (4)0.067*
H9B0.628 (5)0.265 (2)0.933 (4)0.067*
U11U22U33U12U13U23
S10.0437 (4)0.0446 (4)0.0318 (3)0.0029 (3)0.0197 (3)0.0001 (3)
S20.0620 (5)0.0378 (4)0.0438 (4)0.0134 (3)0.0300 (3)0.0079 (3)
O20.0626 (14)0.0449 (12)0.0676 (13)−0.0052 (10)0.0324 (11)0.0156 (10)
O10.0774 (15)0.0474 (12)0.0479 (11)0.0132 (10)0.0324 (10)0.0173 (9)
N10.0462 (13)0.0290 (10)0.0307 (10)0.0011 (8)0.0165 (9)0.0002 (8)
N20.0395 (12)0.0350 (11)0.0336 (10)−0.0027 (9)0.0157 (9)0.0043 (8)
C10.0302 (11)0.0313 (11)0.0309 (11)−0.0057 (9)0.0131 (9)−0.0006 (9)
C20.0670 (19)0.0366 (14)0.0269 (12)−0.0020 (13)0.0199 (12)−0.0014 (10)
C30.0606 (19)0.0446 (16)0.0388 (14)0.0013 (14)0.0254 (13)0.0046 (12)
C40.0445 (16)0.0373 (14)0.0382 (13)0.0062 (11)0.0180 (12)0.0031 (11)
C50.0602 (19)0.0332 (14)0.0537 (17)0.0073 (13)0.0267 (14)0.0094 (12)
C60.0612 (19)0.0389 (15)0.0571 (17)0.0089 (14)0.0379 (15)0.0054 (13)
C70.0625 (19)0.0549 (18)0.0460 (16)−0.0029 (15)0.0336 (15)0.0057 (13)
C80.071 (2)0.0428 (16)0.0476 (16)0.0035 (14)0.0285 (15)−0.0029 (12)
C90.071 (2)0.0342 (15)0.069 (2)0.0078 (15)0.0329 (17)0.0062 (14)
S1—C11.728 (2)C3—H3B0.98 (4)
S2—C11.709 (2)C4—C51.512 (4)
O2—C71.418 (4)C4—H4A0.96 (3)
O2—C91.423 (4)C4—H4B0.93 (3)
O1—C31.414 (3)C5—H5A1.02 (3)
O1—C51.428 (3)C5—H5B0.94 (4)
N1—C11.341 (3)C6—C71.498 (4)
N1—C41.466 (3)C6—H6A1.02 (3)
N1—C21.468 (3)C6—H6B0.89 (4)
N2—C61.478 (3)C7—H7A0.96 (3)
N2—C81.480 (4)C7—H7B0.95 (4)
N2—H1N0.86 (4)C8—C91.498 (4)
N2—H2N0.91 (4)C8—H8A1.05 (3)
C2—C31.515 (4)C8—H8B0.90 (3)
C2—H2A1.01 (3)C9—H9A1.01 (3)
C2—H2B0.94 (4)C9—H9B0.94 (4)
C3—H3A1.01 (3)
C7—O2—C9110.7 (2)H4A—C4—H4B115 (3)
C3—O1—C5110.1 (2)O1—C5—C4111.3 (2)
C1—N1—C4124.7 (2)O1—C5—H5A108.8 (19)
C1—N1—C2122.8 (2)C4—C5—H5A107.2 (19)
C4—N1—C2112.2 (2)O1—C5—H5B103 (2)
C6—N2—C8111.0 (2)C4—C5—H5B112 (2)
C6—N2—H1N107 (2)H5A—C5—H5B114 (3)
C8—N2—H1N111 (2)N2—C6—C7108.9 (2)
C6—N2—H2N112 (2)N2—C6—H6A106.0 (19)
C8—N2—H2N107 (2)C7—C6—H6A109.9 (19)
H1N—N2—H2N109 (3)N2—C6—H6B109 (2)
N1—C1—S2120.49 (17)C7—C6—H6B113 (2)
N1—C1—S1119.70 (18)H6A—C6—H6B110 (3)
S2—C1—S1119.79 (13)O2—C7—C6111.4 (3)
N1—C2—C3109.9 (2)O2—C7—H7A110 (2)
N1—C2—H2A109.1 (19)C6—C7—H7A110 (2)
C3—C2—H2A111 (2)O2—C7—H7B104 (2)
N1—C2—H2B106 (2)C6—C7—H7B109 (2)
C3—C2—H2B113 (2)H7A—C7—H7B112 (3)
H2A—C2—H2B108 (3)N2—C8—C9109.5 (2)
O1—C3—C2111.9 (2)N2—C8—H8A100.0 (19)
O1—C3—H3A106 (2)C9—C8—H8A114.1 (19)
C2—C3—H3A109.6 (19)N2—C8—H8B109 (2)
O1—C3—H3B105 (2)C9—C8—H8B116 (2)
C2—C3—H3B109 (2)H8A—C8—H8B107 (3)
H3A—C3—H3B115 (3)O2—C9—C8111.6 (3)
N1—C4—C5110.0 (2)O2—C9—H9A105.6 (19)
N1—C4—H4A109 (2)C8—C9—H9A109.2 (19)
C5—C4—H4A107 (2)O2—C9—H9B106 (2)
N1—C4—H4B107 (2)C8—C9—H9B109 (2)
C5—C4—H4B108 (2)H9A—C9—H9B116 (3)
C4—N1—C1—S2178.8 (2)C2—N1—C4—C5−53.1 (3)
C2—N1—C1—S25.9 (3)C3—O1—C5—C4−60.0 (3)
C4—N1—C1—S1−3.0 (3)N1—C4—C5—O156.4 (3)
C2—N1—C1—S1−175.9 (2)C8—N2—C6—C7−55.7 (4)
C1—N1—C2—C3−133.9 (3)C9—O2—C7—C6−60.0 (4)
C4—N1—C2—C352.4 (3)N2—C6—C7—O258.1 (4)
C5—O1—C3—C259.7 (3)C6—N2—C8—C954.9 (4)
N1—C2—C3—O1−55.7 (3)C7—O2—C9—C859.0 (4)
C1—N1—C4—C5133.4 (3)N2—C8—C9—O2−56.2 (4)
D—H···AD—HH···AD···AD—H···A
N2—H1N···S10.86 (4)2.47 (4)3.284 (3)158 (3)
N2—H2N···S1i0.91 (4)2.75 (4)3.453 (2)135 (3)
N2—H2N···S2i0.91 (4)2.39 (3)3.221 (2)151 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N⋯S10.86 (4)2.47 (4)3.284 (3)158 (3)
N2—H2N⋯S1i0.91 (4)2.75 (4)3.453 (2)135 (3)
N2—H2N⋯S2i0.91 (4)2.39 (3)3.221 (2)151 (3)

Symmetry code: (i) .

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