| Literature DB >> 22058749 |
Kamentheren Padayachy1, Zolani Mgcima, Manuel A Fernandes, Helder M Marques, Alvaro S de Sousa.
Abstract
In the title compound, C(4)H(10)NO(+)·Br(-), which was synthesized by dehydration of diethano-lamine with HBr, morpholinium and bromide ions are linked into chains by N-H⋯Br hydrogen bonds describing a C(2) (1)(4) graph-set motif. Weaker bifurcated N-H⋯Br inter-actions join centrosymmetrically related chains through alternating binary graph-set R(4) (2)(8) and R(2) (2)(4) motifs, to form ladders along [100]. In addition, C-H⋯O inter-actions between centrosymmetric morpholinium cations link ladders, via[Formula: see text](8) motifs, to yield sheets parallel to (101), which in turn are crosslinked by weak C-H⋯O inter-actions, related across a glide plane, to form a three-dimensional network.Entities:
Year: 2011 PMID: 22058749 PMCID: PMC3201370 DOI: 10.1107/S1600536811035598
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H10NO+·Br− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5677 reflections |
| θ = 2.9–28.3° | |
| µ = 6.44 mm−1 | |
| β = 100.312 (2)° | Needle, colourless |
| 0.40 × 0.20 × 0.09 mm | |
| Bruker APEXII CCD area-detector diffractometer | 1516 independent reflections |
| Radiation source: fine-focus sealed tube | 1314 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.0°, θmin = 2.9° |
| Absorption correction: integration (face indexed absorption corrections carried out with | |
| 11662 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1516 reflections | (Δ/σ)max = 0.002 |
| 64 parameters | Δρmax = 1.07 e Å−3 |
| 0 restraints | Δρmin = −1.38 e Å−3 |
| Experimental. Intensity data were collected on a Bruker APEX II CCD area detector diffractometer with graphite monochromated Mo Kα radiation (50 kV, 30 mA) using the APEX 2 (Bruker, 2005) data collection software. The collection method involved ω-scans of width 0.5° and 512 x 512 bit data frames. Data reduction was carried out using the program SAINT-Plus (Bruker, 2005). The crystal structure was solved by direct methods using SHELXTL (Sheldrick, 2008). Non-hydrogen atoms were first refined isotropically followed by anisotropic refinement by full matrix least-squares calculations based on F2 using SHELXTL. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.74904 (4) | 0.11971 (3) | 0.07284 (3) | 0.02454 (16) | |
| O1 | 0.2489 (4) | 0.10940 (17) | 0.4694 (3) | 0.0263 (5) | |
| N1 | 0.2813 (4) | 0.0830 (2) | 0.1937 (2) | 0.0199 (5) | |
| H1A | 0.3739 | 0.0758 | 0.1318 | 0.024* | |
| H1B | 0.1372 | 0.0808 | 0.1480 | 0.024* | |
| C1 | 0.3228 (5) | 0.2082 (3) | 0.2657 (3) | 0.0243 (6) | |
| H1C | 0.2788 | 0.2807 | 0.2024 | 0.029* | |
| H1D | 0.4831 | 0.2170 | 0.3026 | 0.029* | |
| C4 | 0.3199 (5) | −0.0280 (3) | 0.2893 (3) | 0.0246 (6) | |
| H4A | 0.4801 | −0.0347 | 0.3272 | 0.029* | |
| H4B | 0.2732 | −0.1098 | 0.2410 | 0.029* | |
| C2 | 0.1926 (5) | 0.2149 (3) | 0.3781 (3) | 0.0273 (6) | |
| H2A | 0.2241 | 0.2980 | 0.4268 | 0.033* | |
| H2B | 0.0319 | 0.2119 | 0.3404 | 0.033* | |
| C3 | 0.1915 (5) | −0.0094 (3) | 0.4004 (3) | 0.0272 (6) | |
| H3A | 0.0308 | −0.0095 | 0.3628 | 0.033* | |
| H3B | 0.2221 | −0.0824 | 0.4646 | 0.033* |
| Br1 | 0.0153 (2) | 0.0332 (2) | 0.0242 (2) | −0.00109 (9) | 0.00118 (14) | −0.00764 (10) |
| O1 | 0.0358 (13) | 0.0301 (11) | 0.0127 (10) | 0.0010 (8) | 0.0031 (9) | 0.0004 (7) |
| N1 | 0.0159 (11) | 0.0289 (11) | 0.0147 (11) | 0.0018 (8) | 0.0021 (9) | −0.0013 (8) |
| C1 | 0.0259 (14) | 0.0220 (13) | 0.0238 (14) | −0.0055 (10) | 0.0014 (11) | 0.0010 (10) |
| C4 | 0.0274 (14) | 0.0238 (14) | 0.0213 (14) | 0.0042 (10) | 0.0014 (11) | −0.0004 (10) |
| C2 | 0.0336 (16) | 0.0246 (14) | 0.0225 (15) | 0.0050 (11) | 0.0018 (13) | −0.0047 (11) |
| C3 | 0.0340 (15) | 0.0245 (14) | 0.0230 (14) | −0.0033 (11) | 0.0053 (12) | 0.0037 (11) |
| O1—C3 | 1.422 (3) | C1—H1D | 0.9900 |
| O1—C2 | 1.428 (3) | C4—C3 | 1.495 (4) |
| N1—C1 | 1.481 (3) | C4—H4A | 0.9900 |
| N1—C4 | 1.490 (3) | C4—H4B | 0.9900 |
| N1—H1A | 0.9200 | C2—H2A | 0.9900 |
| N1—H1B | 0.9200 | C2—H2B | 0.9900 |
| C1—C2 | 1.502 (4) | C3—H3A | 0.9900 |
| C1—H1C | 0.9900 | C3—H3B | 0.9900 |
| C3—O1—C2 | 109.1 (2) | N1—C4—H4B | 109.6 |
| C1—N1—C4 | 110.9 (2) | C3—C4—H4B | 109.6 |
| C1—N1—H1A | 109.5 | H4A—C4—H4B | 108.1 |
| C4—N1—H1A | 109.5 | O1—C2—C1 | 110.8 (2) |
| C1—N1—H1B | 109.5 | O1—C2—H2A | 109.5 |
| C4—N1—H1B | 109.5 | C1—C2—H2A | 109.5 |
| H1A—N1—H1B | 108.1 | O1—C2—H2B | 109.5 |
| N1—C1—C2 | 110.1 (2) | C1—C2—H2B | 109.5 |
| N1—C1—H1C | 109.6 | H2A—C2—H2B | 108.1 |
| C2—C1—H1C | 109.6 | O1—C3—C4 | 111.3 (2) |
| N1—C1—H1D | 109.6 | O1—C3—H3A | 109.4 |
| C2—C1—H1D | 109.6 | C4—C3—H3A | 109.4 |
| H1C—C1—H1D | 108.1 | O1—C3—H3B | 109.4 |
| N1—C4—C3 | 110.2 (2) | C4—C3—H3B | 109.4 |
| N1—C4—H4A | 109.6 | H3A—C3—H3B | 108.0 |
| C3—C4—H4A | 109.6 | ||
| C4—N1—C1—C2 | −52.4 (3) | N1—C1—C2—O1 | 57.9 (3) |
| C1—N1—C4—C3 | 52.1 (3) | C2—O1—C3—C4 | 62.3 (3) |
| C3—O1—C2—C1 | −62.4 (3) | N1—C4—C3—O1 | −57.4 (3) |
| H··· | ||||
| N1—H1A···Br1 | 0.92 | 2.52 | 3.331 (2) | 148 |
| N1—H1A···Br1i | 0.92 | 2.89 | 3.389 (2) | 115 |
| N1—H1B···Br1ii | 0.92 | 2.40 | 3.292 (2) | 164 |
| C4—H4A···O1iii | 0.99 | 2.52 | 3.366 (4) | 143 |
| C1—H1C···O1iv | 0.99 | 2.59 | 3.498 (4) | 152 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.92 | 2.52 | 3.331 (2) | 148 |
| N1—H1 | 0.92 | 2.89 | 3.389 (2) | 115 |
| N1—H1 | 0.92 | 2.40 | 3.292 (2) | 164 |
| C4—H4 | 0.99 | 2.52 | 3.366 (4) | 143 |
| C1—H1 | 0.99 | 2.59 | 3.498 (4) | 152 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .