Literature DB >> 21836925

Sodium piperidine-1-carbodithio-ate dihydrate.

Ana C Mafud1, Maria Teresa P Gambardella.   

Abstract

The asymmetric unit of the title compound, Na(+)·C(6)H(10)NS(2) (-)·2H(2)O, is composed of a sodium cation, a piperidine-dithio-carbamate anion which exhibits positional disorder, and two lattice water mol-ecules. The atoms of the piperidine ring are divided over two sites with occupancy factors of 0.554 (6) and 0.446 (6). In the crystal, the sodium cation (coordination number of 6) and the piperidine-dithio-carbamate anion are linked, forming an infinite two-dimensional network extending parallel to (001). O-H⋯S hydrogen bonds, involving the lattice water mol-ecules, also aid in stabilizing the crystal sructure.

Entities:  

Year:  2011        PMID: 21836925      PMCID: PMC3151976          DOI: 10.1107/S1600536811022604

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar compounds, see: Oskarsson et al. (1979 ▶); Albertsson et al. (1980 ▶); Ymén (1982 ▶); Mafud & Gambardella (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

Na+·C6H10NS2 −·2H2O M = 219.29 Monoclinic, a = 12.241 (5) Å b = 5.909 (5) Å c = 14.690 (5) Å β = 95.519 (5)° V = 1057.6 (11) Å3 Z = 4 Mo Kα radiation μ = 0.51 mm−1 T = 290 K 0.02 × 0.02 × 0.02 mm

Data collection

Nonius KappaCCD diffractometer 7553 measured reflections 1863 independent reflections 1482 reflections with I > 2σ(I) R int = 0.145

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.152 S = 1.02 1863 reflections 176 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.36 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811022604/su2283sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811022604/su2283Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811022604/su2283Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Na+·C6H10NS2·2H2OF(000) = 464
Mr = 219.29Dx = 1.377 Mg m3
Monoclinic, P21/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yabCell parameters from 24030 reflections
a = 12.241 (5) Åθ = 2.9–26.7°
b = 5.909 (5) ŵ = 0.51 mm1
c = 14.690 (5) ÅT = 290 K
β = 95.519 (5)°Prism, colourless
V = 1057.6 (11) Å30.02 × 0.02 × 0.02 mm
Z = 4
Nonius KappaCCD diffractometer1482 reflections with I > 2σ(I)
Radiation source: Enraf Nonius FR590Rint = 0.145
graphiteθmax = 25.1°, θmin = 3.3°
Detector resolution: 9 pixels mm-1h = −14→14
CCD rotation images, thick slices scansk = −7→6
7553 measured reflectionsl = −17→16
1863 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0964P)2] where P = (Fo2 + 2Fc2)/3
1863 reflections(Δ/σ)max < 0.001
176 parametersΔρmax = 0.33 e Å3
6 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.74854 (5)0.03097 (13)0.39216 (4)0.0481 (3)
S20.86593 (6)0.24242 (13)0.24400 (5)0.0577 (3)
Na10.57813 (8)−0.24210 (16)0.48568 (8)0.0509 (4)
O10.41274 (14)−0.0826 (4)0.41396 (13)0.0542 (5)
H11O0.403 (3)−0.012 (5)0.3644 (17)0.081*
H12O0.369 (2)−0.194 (4)0.418 (2)0.081*
O20.55132 (14)−0.5918 (4)0.40928 (13)0.0533 (5)
H21O0.509 (2)−0.604 (6)0.3618 (16)0.08*
H22O0.604 (2)−0.687 (5)0.409 (2)0.08*
C10.7694 (2)0.0599 (5)0.27824 (18)0.0551 (7)
N10.6797 (6)0.0084 (12)0.2149 (4)0.0541 (16)0.446 (6)
C20.6746 (8)0.0673 (16)0.1177 (5)0.081 (3)0.446 (6)
H2A0.730.18070.10920.097*0.446 (6)
H2B0.60340.13360.09910.097*0.446 (6)
C30.6917 (19)−0.128 (5)0.0585 (18)0.095 (8)0.446 (6)
H3A0.7657−0.18620.07160.114*0.446 (6)
H3B0.6818−0.0832−0.00530.114*0.446 (6)
C40.6069 (10)−0.314 (3)0.0773 (10)0.079 (4)0.446 (6)
H4A0.5339−0.26160.05550.095*0.446 (6)
H4B0.6218−0.4490.0430.095*0.446 (6)
C50.6089 (7)−0.3753 (16)0.1787 (6)0.076 (2)0.446 (6)
H5A0.5505−0.48180.18770.091*0.446 (6)
H5B0.6784−0.44510.19980.091*0.446 (6)
C60.5931 (7)−0.1592 (18)0.2320 (6)0.067 (2)0.446 (6)
H6A0.5213−0.09580.21350.08*0.446 (6)
H6B0.5969−0.19320.29690.08*0.446 (6)
N1'0.7338 (4)−0.1085 (10)0.2187 (3)0.0516 (13)0.554 (6)
C2'0.7582 (5)−0.1213 (13)0.1240 (4)0.0677 (19)0.554 (6)
H2'10.7906−0.2670.11250.081*0.554 (6)
H2'20.8103−0.00420.11190.081*0.554 (6)
C3'0.6545 (14)−0.091 (5)0.0626 (11)0.095 (6)0.554 (6)
H3'10.6717−0.1086−0.00020.115*0.554 (6)
H3'20.62910.06290.06930.115*0.554 (6)
C4'0.5616 (9)−0.249 (3)0.0778 (10)0.111 (5)0.554 (6)
H4'10.5798−0.40260.06160.133*0.554 (6)
H4'20.4954−0.20370.04070.133*0.554 (6)
C5'0.5447 (6)−0.2350 (14)0.1783 (6)0.082 (2)0.554 (6)
H5'10.5157−0.08690.19120.098*0.554 (6)
H5'20.4909−0.34710.19220.098*0.554 (6)
C6'0.6494 (6)−0.2736 (13)0.2392 (4)0.0629 (18)0.554 (6)
H6'10.6349−0.25920.30270.075*0.554 (6)
H6'20.6759−0.42580.22990.075*0.554 (6)
U11U22U33U12U13U23
S10.0420 (4)0.0551 (5)0.0476 (4)0.0008 (3)0.0057 (3)−0.0027 (3)
S20.0586 (5)0.0585 (6)0.0565 (5)−0.0121 (3)0.0090 (3)0.0002 (3)
Na10.0465 (6)0.0453 (8)0.0609 (7)0.0002 (4)0.0053 (5)−0.0005 (5)
O10.0534 (11)0.0470 (13)0.0608 (12)−0.0039 (9)−0.0015 (9)0.0059 (10)
O20.0502 (10)0.0497 (13)0.0597 (12)0.0060 (9)0.0033 (8)−0.0031 (10)
C10.0574 (15)0.056 (2)0.0512 (15)−0.0111 (13)0.0027 (12)−0.0035 (14)
N10.062 (4)0.052 (4)0.047 (3)−0.008 (3)−0.001 (3)0.000 (2)
C20.108 (6)0.080 (7)0.051 (4)−0.026 (5)−0.008 (4)0.007 (4)
C30.104 (14)0.107 (13)0.079 (10)−0.051 (11)0.044 (10)−0.030 (8)
C40.077 (8)0.090 (9)0.070 (6)−0.033 (7)0.003 (6)−0.028 (7)
C50.070 (5)0.070 (6)0.088 (6)−0.017 (5)0.014 (4)0.000 (5)
C60.053 (4)0.086 (7)0.061 (4)−0.022 (5)0.010 (4)−0.010 (5)
N1'0.052 (3)0.056 (3)0.047 (2)−0.011 (2)0.0082 (18)−0.007 (2)
C2'0.071 (4)0.084 (5)0.050 (3)−0.020 (3)0.016 (3)−0.018 (3)
C3'0.105 (12)0.130 (13)0.049 (6)−0.041 (9)−0.004 (7)0.016 (7)
C4'0.082 (8)0.148 (14)0.096 (7)−0.042 (7)−0.030 (6)0.037 (7)
C5'0.061 (4)0.077 (6)0.107 (6)−0.020 (4)0.007 (4)−0.002 (4)
C6'0.066 (4)0.060 (5)0.061 (4)−0.027 (3)0.000 (3)−0.009 (3)
S1—C11.726 (3)C3—H3A0.97
S1—Na1i2.9644 (15)C3—H3B0.97
S1—Na13.0649 (15)C4—C51.530 (18)
S2—C11.710 (3)C4—H4A0.97
Na1—O22.360 (3)C4—H4B0.97
Na1—O12.385 (2)C5—C61.521 (14)
Na1—O1ii2.416 (3)C5—H5A0.97
Na1—O2iii2.515 (2)C5—H5B0.97
Na1—S1iv2.9644 (15)C6—H6A0.97
Na1—Na1ii3.490 (3)C6—H6B0.97
Na1—Na1iii3.644 (3)N1'—C2'1.452 (6)
Na1—H12O2.67 (3)N1'—C6'1.473 (7)
O1—Na1ii2.416 (3)C2'—C3'1.495 (19)
O1—H11O0.839 (17)C2'—H2'10.97
O1—H12O0.852 (17)C2'—H2'20.97
O2—Na1iii2.515 (2)C3'—C4'1.50 (3)
O2—H21O0.834 (17)C3'—H3'10.97
O2—H22O0.856 (17)C3'—H3'20.97
C1—N1'1.368 (5)C4'—C5'1.512 (17)
C1—N11.403 (6)C4'—H4'10.97
N1—C21.465 (9)C4'—H4'20.97
N1—C61.489 (10)C5'—C6'1.507 (11)
C2—C31.47 (3)C5'—H5'10.97
C2—H2A0.97C5'—H5'20.97
C2—H2B0.97C6'—H6'10.97
C3—C41.55 (3)C6'—H6'20.97
C1—S1—Na1i112.20 (10)C3—C2—H2A108.9
C1—S1—Na1131.13 (10)N1—C2—H2B108.9
Na1i—S1—Na1116.43 (4)C3—C2—H2B108.9
O2—Na1—O193.59 (8)H2A—C2—H2B107.8
O2—Na1—O1ii169.15 (8)C2—C3—C4108.3 (14)
O1—Na1—O1ii86.75 (8)C2—C3—H3A110
O2—Na1—O2iii83.29 (8)C4—C3—H3A110
O1—Na1—O2iii82.36 (7)C2—C3—H3B110
O1ii—Na1—O2iii86.01 (8)C4—C3—H3B110
O2—Na1—S1iv87.16 (7)H3A—C3—H3B108.4
O1—Na1—S1iv166.91 (6)C5—C4—C3113.1 (13)
O1ii—Na1—S1iv90.09 (7)C5—C4—H4A109
O2iii—Na1—S1iv84.76 (6)C3—C4—H4A109
O2—Na1—S1108.51 (7)C5—C4—H4B109
O1—Na1—S1100.34 (7)C3—C4—H4B109
O1ii—Na1—S182.06 (7)H4A—C4—H4B107.8
O2iii—Na1—S1167.57 (6)C6—C5—C4108.2 (9)
S1iv—Na1—S191.78 (4)C6—C5—H5A110.1
O2—Na1—Na1ii136.28 (8)C4—C5—H5A110.1
O1—Na1—Na1ii43.73 (6)C6—C5—H5B110.1
O1ii—Na1—Na1ii43.02 (5)C4—C5—H5B110.1
O2iii—Na1—Na1ii82.00 (7)H5A—C5—H5B108.4
S1iv—Na1—Na1ii131.81 (6)N1—C6—C5110.1 (6)
S1—Na1—Na1ii91.55 (6)N1—C6—H6A109.6
O2—Na1—Na1iii43.27 (6)C5—C6—H6A109.6
O1—Na1—Na1iii87.06 (7)N1—C6—H6B109.6
O1ii—Na1—Na1iii126.00 (8)C5—C6—H6B109.6
O2iii—Na1—Na1iii40.02 (5)H6A—C6—H6B108.2
S1iv—Na1—Na1iii84.54 (5)C1—N1'—C2'124.6 (4)
S1—Na1—Na1iii151.58 (5)C1—N1'—C6'122.6 (4)
Na1ii—Na1—Na1iii111.83 (7)C2'—N1'—C6'111.9 (5)
O2—Na1—H12O80.3 (6)N1'—C2'—C3'109.4 (7)
O1—Na1—H12O18.4 (4)N1'—C2'—H2'1109.8
O1ii—Na1—H12O97.4 (7)C3'—C2'—H2'1109.8
O2iii—Na1—H12O68.4 (5)N1'—C2'—H2'2109.8
S1iv—Na1—H12O151.4 (5)C3'—C2'—H2'2109.8
S1—Na1—H12O116.5 (5)H2'1—C2'—H2'2108.2
Na1ii—Na1—H12O56.0 (6)C2'—C3'—C4'116.5 (14)
Na1iii—Na1—H12O68.7 (4)C2'—C3'—H3'1108.2
Na1—O1—Na1ii93.25 (8)C4'—C3'—H3'1108.2
Na1—O1—H11O129 (2)C2'—C3'—H3'2108.2
Na1ii—O1—H11O97 (3)C4'—C3'—H3'2108.2
Na1—O1—H12O100 (2)H3'1—C3'—H3'2107.3
Na1ii—O1—H12O124 (2)C3'—C4'—C5'106.7 (11)
H11O—O1—H12O114 (3)C3'—C4'—H4'1110.4
Na1—O2—Na1iii96.71 (8)C5'—C4'—H4'1110.4
Na1—O2—H21O121 (3)C3'—C4'—H4'2110.4
Na1iii—O2—H21O96 (2)C5'—C4'—H4'2110.4
Na1—O2—H22O121 (2)H4'1—C4'—H4'2108.6
Na1iii—O2—H22O106 (2)C6'—C5'—C4'112.5 (7)
H21O—O2—H22O111 (2)C6'—C5'—H5'1109.1
N1'—C1—N140.3 (3)C4'—C5'—H5'1109.1
N1'—C1—S2117.2 (3)C6'—C5'—H5'2109.1
N1—C1—S2117.4 (3)C4'—C5'—H5'2109.1
N1'—C1—S1118.6 (3)H5'1—C5'—H5'2107.8
N1—C1—S1116.2 (3)N1'—C6'—C5'110.6 (5)
S2—C1—S1121.25 (16)N1'—C6'—H6'1109.5
C1—N1—C2123.5 (5)C5'—C6'—H6'1109.5
C1—N1—C6123.9 (6)N1'—C6'—H6'2109.5
C2—N1—C6111.0 (6)C5'—C6'—H6'2109.5
N1—C2—C3113.2 (13)H6'1—C6'—H6'2108.1
N1—C2—H2A108.9
C1—S1—Na1—O238.84 (16)Na1i—S1—C1—S2−10.8 (2)
Na1i—S1—Na1—O2−135.11 (7)Na1—S1—C1—S2175.08 (10)
C1—S1—Na1—O1−58.52 (16)N1'—C1—N1—C2−89.0 (9)
Na1i—S1—Na1—O1127.53 (7)S2—C1—N1—C211.7 (9)
C1—S1—Na1—O1ii−143.72 (15)S1—C1—N1—C2166.8 (6)
Na1i—S1—Na1—O1ii42.34 (6)N1'—C1—N1—C675.0 (8)
C1—S1—Na1—O2iii−160.0 (3)S2—C1—N1—C6175.6 (6)
Na1i—S1—Na1—O2iii26.0 (3)S1—C1—N1—C6−29.3 (9)
C1—S1—Na1—S1iv126.44 (14)C1—N1—C2—C3104.9 (12)
Na1i—S1—Na1—S1iv−47.50 (6)C6—N1—C2—C3−60.8 (14)
C1—S1—Na1—Na1ii−101.64 (15)N1—C2—C3—C455 (2)
Na1i—S1—Na1—Na1ii84.41 (5)C2—C3—C4—C5−53 (2)
C1—S1—Na1—Na1iii44.63 (19)C3—C4—C5—C654.8 (15)
Na1i—S1—Na1—Na1iii−129.32 (11)C1—N1—C6—C5−105.1 (9)
O2—Na1—O1—Na1ii169.13 (8)C2—N1—C6—C560.6 (11)
O1ii—Na1—O1—Na1ii0C4—C5—C6—N1−57.2 (11)
O2iii—Na1—O1—Na1ii86.40 (8)N1—C1—N1'—C2'90.7 (8)
S1iv—Na1—O1—Na1ii76.2 (3)S2—C1—N1'—C2'−10.6 (7)
S1—Na1—O1—Na1ii−81.31 (7)S1—C1—N1'—C2'−171.6 (4)
Na1iii—Na1—O1—Na1ii126.33 (8)N1—C1—N1'—C6'−77.5 (6)
O1—Na1—O2—Na1iii−81.86 (8)S2—C1—N1'—C6'−178.7 (4)
O1ii—Na1—O2—Na1iii9.6 (5)S1—C1—N1'—C6'20.2 (7)
O2iii—Na1—O2—Na1iii0C1—N1'—C2'—C3'−113.5 (12)
S1iv—Na1—O2—Na1iii85.05 (6)C6'—N1'—C2'—C3'55.7 (13)
S1—Na1—O2—Na1iii175.98 (6)N1'—C2'—C3'—C4'−55 (2)
Na1ii—Na1—O2—Na1iii−70.99 (11)C2'—C3'—C4'—C5'52.4 (19)
Na1i—S1—C1—N1'149.5 (3)C3'—C4'—C5'—C6'−52.4 (15)
Na1—S1—C1—N1'−24.6 (4)C1—N1'—C6'—C5'110.7 (7)
Na1i—S1—C1—N1−164.9 (4)C2'—N1'—C6'—C5'−58.7 (9)
Na1—S1—C1—N121.0 (5)C4'—C5'—C6'—N1'57.7 (11)
D—H···AD—HH···AD···AD—H···A
O1—H11O···S2v0.84 (2)2.39 (2)3.214 (2)167 (3)
O1—H12O···S1vi0.85 (2)2.49 (2)3.322 (3)167 (3)
O2—H21O···S2vi0.83 (2)2.48 (2)3.283 (2)163 (3)
O2—H22O···S1vii0.86 (2)2.46 (2)3.313 (2)174 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H11O⋯S2i0.84 (2)2.39 (2)3.214 (2)167 (3)
O1—H12O⋯S1ii0.85 (2)2.49 (2)3.322 (3)167 (3)
O2—H21O⋯S2ii0.83 (2)2.48 (2)3.283 (2)163 (3)
O2—H22O⋯S1iii0.86 (2)2.46 (2)3.313 (2)174 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-04

3.  Poly[μ2-aqua-aqua-[μ3-N-butyl-N-(2-hy-droxy-ethyl)di-thio-carbamato-κ(3) O,O':S]sodium].

Authors:  Muzzaffar A Bhat; Shalini Jain; Sanjay K Srivastava; Ray J Butcher; Jan Wikaira
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-20
  3 in total

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