Literature DB >> 21754156

Ammonium piperidine-1-carbodithio-ate.

Ana C Mafud1, Maria T P Gambardella.   

Abstract

The title compound, NH(4) (+)·C(6)H(10)NS(2) (-), is composed of an ammonium cation and a piperidine-1-carbodithio-ate anion which exhibits positional disorder. The atoms of the ring have a structural disorder and they are divided into two sites, with occupancy factors of 0.584 and 0.426.. In the crystal, the cation and anion are linked by N-H⋯S hydrogen bonds to form an infinite two-dimensional network.

Entities:  

Year:  2011        PMID: 21754156      PMCID: PMC3099862          DOI: 10.1107/S1600536811008129

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar compounds, see: Wahlberg (1979 ▶, 1980 ▶, 1981 ▶).

Experimental

Crystal data

NH4C6H10NS2 M = 178.31 Monoclinic, a = 8.8812 (9) Å b = 9.0025 (9) Å c = 11.8995 (5) Å β = 104.318 (5)° V = 921.85 (14) Å3 Z = 4 Mo Kα radiation μ = 0.51 mm−1 T = 290 K 0.40 × 0.35 × 0.13 mm

Data collection

Enraf–Nonius TurboCAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.582, T max = 0.936 2847 measured reflections 2684 independent reflections 2093 reflections with I > 2σ(I) R int = 0.015 3 standard reflections every 120 min intensity decay: 5%

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.123 S = 1.06 2684 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.57 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008129/su2257sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008129/su2257Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
NH4+·C6H10NS2F(000) = 384
Mr = 178.31Dx = 1.285 Mg m3
Monoclinic, P21/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yabCell parameters from 14 reflections
a = 8.8812 (9) Åθ = 12.0–18.1°
b = 9.0025 (9) ŵ = 0.51 mm1
c = 11.8995 (5) ÅT = 290 K
β = 104.318 (5)°Prism, colourless
V = 921.85 (14) Å30.40 × 0.35 × 0.13 mm
Z = 4
Enraf–Nonius TurboCAD-4 diffractometer2093 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.015
graphiteθmax = 30.0°, θmin = 2.9°
non–profiled ω/2θ scansh = 0→12
Absorption correction: ψ scan (North et al., 1968)k = −12→0
Tmin = 0.582, Tmax = 0.936l = −16→16
2847 measured reflections3 standard reflections every 120 min
2684 independent reflections intensity decay: 5%
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.042w = 1/[σ2(Fo2) + (0.075P)2 + 0.1152P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.123(Δ/σ)max = 0.022
S = 1.06Δρmax = 0.57 e Å3
2684 reflectionsΔρmin = −0.29 e Å3
153 parameters
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
xyzUiso*/UeqOcc. (<1)
S10.77666 (5)0.04141 (4)0.55813 (3)0.0404 (1)
S20.83657 (6)−0.11212 (5)0.78409 (4)0.0531 (1)
N20.8144 (3)0.17995 (18)0.76181 (14)0.0669 (6)
C10.80997 (19)0.05002 (17)0.70767 (14)0.0391 (4)
C2A0.7452 (6)0.3162 (4)0.6942 (3)0.0549 (13)0.584 (8)
C3A0.8316 (9)0.4502 (5)0.7551 (5)0.0625 (15)0.584 (8)
C4A0.7868 (18)0.4519 (18)0.8807 (15)0.077 (4)0.584 (8)
C5A0.8614 (7)0.3215 (5)0.9445 (4)0.0629 (15)0.584 (8)
C6A0.7972 (9)0.1813 (7)0.8853 (5)0.0666 (18)0.584 (8)
C6B0.8811 (14)0.1978 (9)0.8936 (6)0.073 (3)0.416 (8)
C3B0.7530 (10)0.4409 (9)0.7391 (7)0.062 (2)0.416 (8)
C4B0.816 (3)0.472 (3)0.866 (2)0.079 (5)0.416 (8)
C2B0.8552 (8)0.3244 (5)0.7066 (4)0.0507 (16)0.416 (8)
C5B0.7715 (14)0.3116 (13)0.9232 (7)0.096 (4)0.416 (8)
N10.47677 (19)0.24531 (19)0.40932 (17)0.0468 (5)
H2A20.756400.310400.615200.0660*0.584 (8)
H3A10.797200.540600.712100.0750*0.584 (8)
H2A10.635500.323700.691700.0660*0.584 (8)
H6A10.688300.172600.885000.0800*0.584 (8)
H6A20.852000.097000.927300.0800*0.584 (8)
H3A20.942800.439500.765100.0750*0.584 (8)
H4A10.824500.542100.922900.0920*0.584 (8)
H4A20.675000.446800.869800.0920*0.584 (8)
H5A10.845600.322701.022300.0750*0.584 (8)
H5A20.972400.325600.950900.0750*0.584 (8)
H2B10.963900.349300.736900.0610*0.416 (8)
H2B20.834200.314500.623000.0610*0.416 (8)
H3B10.754300.530500.694100.0740*0.416 (8)
H3B20.646800.405400.724600.0740*0.416 (8)
H4B10.765500.556300.891200.0950*0.416 (8)
H4B20.927800.488600.884700.0950*0.416 (8)
H5B10.787200.320501.006500.1150*0.416 (8)
H5B20.664100.284400.889300.1150*0.416 (8)
H6B10.877600.105000.934200.0870*0.416 (8)
H6B20.987100.234200.911500.0870*0.416 (8)
H10.522 (3)0.290 (3)0.372 (2)0.068 (8)*
H20.542 (3)0.184 (3)0.4556 (19)0.055 (6)*
H30.448 (3)0.308 (3)0.463 (2)0.081 (8)*
H40.393 (4)0.201 (3)0.365 (3)0.090 (9)*
U11U22U33U12U13U23
S10.0487 (2)0.0370 (2)0.0367 (2)0.0034 (2)0.0126 (2)0.0006 (1)
S20.0722 (3)0.0415 (2)0.0449 (2)−0.0032 (2)0.0132 (2)0.0091 (2)
N20.1274 (16)0.0387 (8)0.0397 (7)0.0076 (9)0.0302 (9)−0.0007 (6)
C10.0447 (8)0.0371 (7)0.0379 (7)−0.0001 (6)0.0150 (6)0.0017 (6)
C2A0.071 (3)0.0412 (16)0.0505 (17)0.0079 (16)0.0113 (16)−0.0034 (12)
C3A0.077 (3)0.0394 (17)0.068 (3)−0.001 (2)0.012 (3)−0.0056 (16)
C4A0.105 (6)0.067 (8)0.063 (5)0.019 (6)0.030 (4)−0.021 (4)
C5A0.071 (3)0.072 (3)0.0455 (18)0.000 (2)0.014 (2)−0.0168 (17)
C6A0.101 (4)0.066 (3)0.0404 (19)−0.004 (3)0.032 (3)−0.0098 (17)
C6B0.122 (7)0.059 (3)0.039 (3)−0.011 (5)0.024 (4)0.000 (2)
C3B0.058 (4)0.059 (3)0.067 (4)0.016 (3)0.014 (3)−0.011 (3)
C4B0.130 (11)0.050 (4)0.067 (7)−0.008 (6)0.043 (6)−0.017 (4)
C2B0.070 (4)0.0338 (19)0.052 (2)0.007 (2)0.022 (2)0.0016 (16)
C5B0.097 (6)0.144 (9)0.058 (4)−0.023 (6)0.040 (4)−0.038 (5)
N10.0396 (8)0.0394 (7)0.0623 (9)−0.0031 (6)0.0141 (7)0.0027 (7)
S1—C11.7319 (17)C2A—H2A20.9700
S2—C11.7050 (16)C2B—H2B10.9700
N2—C11.331 (2)C2B—H2B20.9700
N2—C2A1.512 (4)C3A—H3A10.9700
N2—C6A1.515 (6)C3A—H3A20.9700
N2—C2B1.540 (5)C3B—H3B10.9700
N2—C6B1.542 (7)C3B—H3B20.9700
N1—H40.89 (3)C4A—H4A10.9700
N1—H30.93 (3)C4A—H4A20.9700
N1—H10.78 (3)C4B—H4B20.9700
N1—H20.89 (3)C4B—H4B10.9700
C2A—C3A1.515 (7)C5A—H5A10.9700
C2B—C3B1.499 (10)C5A—H5A20.9700
C3A—C4A1.639 (18)C5B—H5B10.9700
C3B—C4B1.50 (2)C5B—H5B20.9700
C4A—C5A1.465 (17)C6A—H6A20.9700
C4B—C5B1.69 (3)C6A—H6A10.9700
C5A—C6A1.489 (8)C6B—H6B10.9700
C5B—C6B1.514 (16)C6B—H6B20.9700
C2A—H2A10.9700
C1—N2—C2A119.73 (19)C4A—C3A—H3A2111.00
C1—N2—C6A118.6 (3)C2A—C3A—H3A1111.00
C1—N2—C2B121.2 (2)C4B—C3B—H3B2110.00
C1—N2—C6B122.8 (3)C2B—C3B—H3B1110.00
C2A—N2—C6A112.6 (3)C2B—C3B—H3B2110.00
C2B—N2—C6B105.9 (4)C4B—C3B—H3B1110.00
H1—N1—H2109 (3)H3B1—C3B—H3B2109.00
H1—N1—H3110 (3)C3A—C4A—H4A1110.00
H1—N1—H4111 (3)C3A—C4A—H4A2110.00
H2—N1—H3102 (2)C5A—C4A—H4A2110.00
H2—N1—H4114 (3)H4A1—C4A—H4A2109.00
H3—N1—H4110 (3)C5A—C4A—H4A1110.00
S2—C1—N2120.70 (13)C5B—C4B—H4B1112.00
S1—C1—S2118.40 (9)H4B1—C4B—H4B2110.00
S1—C1—N2120.91 (13)C3B—C4B—H4B2111.00
N2—C2A—C3A107.5 (3)C5B—C4B—H4B2112.00
N2—C2B—C3B105.0 (5)C3B—C4B—H4B1112.00
C2A—C3A—C4A103.6 (7)C6A—C5A—H5A2109.00
C2B—C3B—C4B106.9 (12)C4A—C5A—H5A1109.00
C3A—C4A—C5A106.5 (10)C4A—C5A—H5A2109.00
C3B—C4B—C5B100.4 (15)C6A—C5A—H5A1109.00
C4A—C5A—C6A111.3 (8)H5A1—C5A—H5A2108.00
C4B—C5B—C6B104.9 (12)C4B—C5B—H5B2111.00
N2—C6A—C5A110.3 (5)C6B—C5B—H5B1111.00
N2—C6B—C5B101.5 (7)C4B—C5B—H5B1111.00
C3A—C2A—H2A2110.00H5B1—C5B—H5B2109.00
N2—C2A—H2A1110.00C6B—C5B—H5B2111.00
N2—C2A—H2A2110.00N2—C6A—H6A2110.00
C3A—C2A—H2A1110.00C5A—C6A—H6A1110.00
H2A1—C2A—H2A2108.00H6A1—C6A—H6A2108.00
N2—C2B—H2B1111.00C5A—C6A—H6A2110.00
N2—C2B—H2B2111.00N2—C6A—H6A1110.00
C3B—C2B—H2B2111.00H6B1—C6B—H6B2109.00
H2B1—C2B—H2B2109.00N2—C6B—H6B1111.00
C3B—C2B—H2B1111.00N2—C6B—H6B2112.00
C4A—C3A—H3A1111.00C5B—C6B—H6B1111.00
H3A1—C3A—H3A2109.00C5B—C6B—H6B2111.00
C2A—C3A—H3A2111.00
C2A—N2—C1—S117.9 (4)C1—N2—C6A—C5A159.2 (4)
C2A—N2—C1—S2−161.9 (3)C2A—N2—C6A—C5A−53.7 (6)
C6A—N2—C1—S1162.6 (4)N2—C2A—C3A—C4A−65.1 (8)
C6A—N2—C1—S2−17.3 (4)C2A—C3A—C4A—C5A68.2 (10)
C1—N2—C2A—C3A−152.3 (4)C3A—C4A—C5A—C6A−64.0 (11)
C6A—N2—C2A—C3A61.1 (6)C4A—C5A—C6A—N256.6 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1···S2i0.78 (3)2.64 (3)3.4029 (19)167 (2)
N1—H2···S10.89 (3)2.49 (3)3.3565 (19)164 (2)
N1—H3···S1ii0.93 (3)2.51 (3)3.3967 (19)159 (2)
N1—H4···S2iii0.89 (3)2.48 (3)3.3632 (19)170 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S2i0.78 (3)2.64 (3)3.4029 (19)167 (2)
N1—H2⋯S10.89 (3)2.49 (3)3.3565 (19)164 (2)
N1—H3⋯S1ii0.93 (3)2.51 (3)3.3967 (19)159 (2)
N1—H4⋯S2iii0.89 (3)2.48 (3)3.3632 (19)170 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  Sodium piperidine-1-carbodithio-ate dihydrate.

Authors:  Ana C Mafud; Maria Teresa P Gambardella
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18

2.  Morpholin-4-ium morpholine-4-carbo-dithio-ate.

Authors:  Ana C Mafud; Edgar A Sanches; Maria Teresa Gambardella
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13

3.  Potassium morpholine-4-carbodithio-ate monohydrate.

Authors:  Ana C Mafud; Maria Teresa Prado Gambardella
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-04
  3 in total

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