Literature DB >> 22090967

2,2,6,6-Tetra-methyl-4-oxopiperidin-1-ium 4-chloro-3-nitro-benzoate.

Bohari M Yamin1, Norsakina Z Zulkifli.   

Abstract

The title salt, C(9)H(18)NO(+)·C(7)H(3)ClNO(4) (-), was obtained as an unexpected product of the reaction of 4-chloro-3-nitro-benzoyl isothio-cyanate with pyrrolidine. The six-membered ring of the 4-oxopiperidinium cation adopts a chair conformation. In the crystal structure, two cations and three anions are linked together by inter-molecular N-H⋯O and C-H⋯O hydrogen bonds and arranged diagonally along the ac face.

Entities:  

Year:  2011        PMID: 22090967      PMCID: PMC3212310          DOI: 10.1107/S1600536811025074

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Wang et al. (2008 ▶); Jasinski et al. (2009 ▶), Smith & Wermuth (2011 ▶). For bond-length data, see Allen et al. (1987 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C9H18NOC7H3ClNO4 M = 356.80 Triclinic, a = 7.9974 (10) Å b = 10.3267 (13) Å c = 11.9196 (15) Å α = 109.101 (3)° β = 96.785 (3)° γ = 104.720 (3)° V = 877.58 (19) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 298 K 0.40 × 0.14 × 0.09 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.908, T max = 0.978 10082 measured reflections 3431 independent reflections 2268 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.126 S = 1.01 3431 reflections 229 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811025074/ff2016sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811025074/ff2016Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811025074/ff2016Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H18NO+·C7H3ClNO4Z = 2
Mr = 356.80F(000) = 376
Triclinic, P1Dx = 1.350 Mg m3
Hall symbol: -P 1Melting point = 447.3–448.1 K
a = 7.9974 (10) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.3267 (13) ÅCell parameters from 1985 reflections
c = 11.9196 (15) Åθ = 1.8–26.0°
α = 109.101 (3)°µ = 0.25 mm1
β = 96.785 (3)°T = 298 K
γ = 104.720 (3)°Slab, colourless
V = 877.58 (19) Å30.40 × 0.14 × 0.09 mm
Bruker SMART APEX CCD area-detector diffractometer3431 independent reflections
Radiation source: fine-focus sealed tube2268 reflections with I > 2σ(I)
graphiteRint = 0.030
Detector resolution: 83.66 pixels mm-1θmax = 26.0°, θmin = 1.8°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −12→12
Tmin = 0.908, Tmax = 0.978l = −14→14
10082 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0655P)2 + 0.0942P] where P = (Fo2 + 2Fc2)/3
3431 reflections(Δ/σ)max < 0.001
229 parametersΔρmax = 0.25 e Å3
2 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.10661 (8)0.44819 (7)0.35541 (6)0.0712 (2)
O10.1974 (3)0.1497 (2)0.57035 (16)0.0823 (6)
O20.7048 (2)0.76828 (18)0.88016 (14)0.0742 (5)
O30.7880 (2)0.93410 (17)0.80065 (14)0.0624 (5)
O40.3749 (3)0.8614 (2)0.41307 (17)0.0802 (6)
O50.3627 (3)0.6544 (2)0.28559 (16)0.0862 (6)
N10.1289 (2)0.11990 (18)0.88732 (15)0.0386 (4)
H1A0.0241 (16)0.0568 (17)0.8704 (17)0.042 (6)*
H1B0.176 (3)0.151 (2)0.9662 (10)0.052 (6)*
N20.3733 (2)0.7373 (2)0.38805 (18)0.0578 (5)
C10.2358 (3)0.0336 (2)0.81718 (18)0.0452 (5)
C20.0998 (3)0.2474 (2)0.86054 (19)0.0460 (5)
C30.0313 (3)0.1960 (3)0.7231 (2)0.0561 (6)
H3A−0.08980.13260.70140.067*
H3B0.03000.27880.70190.067*
C40.1398 (3)0.1179 (3)0.6502 (2)0.0559 (6)
C50.1637 (3)−0.0069 (3)0.68090 (19)0.0575 (6)
H5A0.2447−0.04520.63560.069*
H5B0.0505−0.08240.65520.069*
C60.2039 (3)−0.1004 (2)0.8498 (2)0.0587 (6)
H6A0.2490−0.07230.93540.088*
H6B0.2636−0.16270.80470.088*
H6C0.0791−0.15040.82970.088*
C70.4326 (3)0.1167 (3)0.8553 (2)0.0642 (7)
H7A0.46880.15530.94250.096*
H7B0.45500.19430.82590.096*
H7C0.49840.05320.82160.096*
C8−0.0406 (3)0.2880 (3)0.9280 (2)0.0639 (7)
H8A0.00560.32211.01410.096*
H8B−0.14350.20500.90450.096*
H8C−0.07230.36270.90800.096*
C90.2697 (3)0.3757 (2)0.9055 (2)0.0682 (7)
H9A0.32080.39430.98850.102*
H9B0.24250.45930.90060.102*
H9C0.35250.35410.85580.102*
C100.4375 (3)0.5931 (2)0.67661 (19)0.0457 (5)
H10A0.45470.56050.73980.055*
C110.5459 (2)0.7263 (2)0.68617 (17)0.0379 (5)
C120.5203 (2)0.7728 (2)0.59146 (17)0.0410 (5)
H12A0.59100.86220.59680.049*
C130.3893 (3)0.6860 (2)0.48870 (18)0.0419 (5)
C140.2792 (3)0.5541 (2)0.47945 (18)0.0442 (5)
C150.3041 (3)0.5083 (2)0.5742 (2)0.0501 (5)
H15A0.23110.42000.56960.060*
C160.6921 (3)0.8182 (2)0.79869 (18)0.0444 (5)
U11U22U33U12U13U23
Cl10.0475 (4)0.0709 (4)0.0599 (4)0.0018 (3)−0.0096 (3)−0.0004 (3)
O10.0921 (14)0.1105 (15)0.0579 (11)0.0264 (11)0.0259 (10)0.0492 (11)
O20.0933 (13)0.0718 (11)0.0368 (9)0.0035 (10)−0.0101 (8)0.0193 (8)
O30.0499 (9)0.0538 (10)0.0625 (10)−0.0038 (8)−0.0101 (8)0.0179 (8)
O40.0923 (14)0.0673 (12)0.0808 (13)0.0234 (10)−0.0083 (10)0.0380 (10)
O50.1131 (16)0.0961 (14)0.0418 (10)0.0258 (12)0.0073 (10)0.0245 (10)
N10.0376 (10)0.0401 (10)0.0317 (9)0.0051 (8)0.0009 (8)0.0127 (8)
N20.0518 (12)0.0640 (14)0.0517 (13)0.0125 (10)−0.0058 (9)0.0241 (11)
C10.0452 (12)0.0525 (13)0.0394 (11)0.0177 (10)0.0074 (9)0.0178 (10)
C20.0479 (12)0.0425 (12)0.0479 (12)0.0111 (9)0.0079 (10)0.0203 (10)
C30.0547 (14)0.0666 (15)0.0555 (14)0.0179 (12)0.0054 (11)0.0369 (12)
C40.0526 (13)0.0719 (16)0.0384 (12)0.0106 (12)0.0014 (10)0.0240 (11)
C50.0676 (16)0.0656 (15)0.0383 (12)0.0252 (12)0.0132 (11)0.0142 (11)
C60.0660 (15)0.0537 (14)0.0607 (15)0.0240 (12)0.0115 (12)0.0234 (12)
C70.0469 (14)0.0842 (18)0.0701 (16)0.0235 (13)0.0146 (12)0.0365 (14)
C80.0691 (16)0.0586 (15)0.0727 (17)0.0284 (13)0.0236 (13)0.0263 (13)
C90.0698 (17)0.0487 (14)0.0756 (18)0.0016 (12)0.0062 (13)0.0262 (13)
C100.0469 (12)0.0481 (12)0.0415 (12)0.0116 (10)0.0106 (9)0.0178 (10)
C110.0354 (10)0.0399 (11)0.0344 (10)0.0119 (9)0.0068 (8)0.0092 (9)
C120.0361 (11)0.0389 (11)0.0426 (12)0.0084 (9)0.0056 (9)0.0120 (9)
C130.0387 (11)0.0469 (12)0.0385 (11)0.0148 (9)0.0058 (9)0.0136 (9)
C140.0341 (11)0.0445 (12)0.0416 (12)0.0106 (9)0.0043 (9)0.0030 (9)
C150.0436 (12)0.0403 (12)0.0575 (14)0.0029 (9)0.0120 (10)0.0146 (10)
C160.0414 (12)0.0472 (13)0.0357 (11)0.0133 (10)0.0015 (9)0.0068 (10)
Cl1—C141.726 (2)C6—H6A0.9600
O1—C41.207 (3)C6—H6B0.9600
O2—C161.245 (3)C6—H6C0.9600
O3—C161.238 (3)C7—H7A0.9600
O4—N21.213 (2)C7—H7B0.9600
O5—N21.219 (2)C7—H7C0.9600
N1—C11.514 (3)C8—H8A0.9600
N1—C21.517 (3)C8—H8B0.9600
N1—H1A0.874 (9)C8—H8C0.9600
N1—H1B0.888 (9)C9—H9A0.9600
N2—C131.467 (3)C9—H9B0.9600
C1—C71.520 (3)C9—H9C0.9600
C1—C61.524 (3)C10—C151.383 (3)
C1—C51.536 (3)C10—C111.387 (3)
C2—C81.521 (3)C10—H10A0.9300
C2—C31.529 (3)C11—C121.377 (3)
C2—C91.529 (3)C11—C161.516 (3)
C3—C41.494 (3)C12—C131.379 (3)
C3—H3A0.9700C12—H12A0.9300
C3—H3B0.9700C13—C141.383 (3)
C4—C51.499 (3)C14—C151.372 (3)
C5—H5A0.9700C15—H15A0.9300
C5—H5B0.9700
C1—N1—C2120.56 (16)H6B—C6—H6C109.5
C1—N1—H1A103.8 (13)C1—C7—H7A109.5
C2—N1—H1A106.4 (13)C1—C7—H7B109.5
C1—N1—H1B108.5 (14)H7A—C7—H7B109.5
C2—N1—H1B107.7 (13)C1—C7—H7C109.5
H1A—N1—H1B109.6 (19)H7A—C7—H7C109.5
O4—N2—O5124.2 (2)H7B—C7—H7C109.5
O4—N2—C13117.4 (2)C2—C8—H8A109.5
O5—N2—C13118.4 (2)C2—C8—H8B109.5
N1—C1—C7111.61 (17)H8A—C8—H8B109.5
N1—C1—C6105.17 (17)C2—C8—H8C109.5
C7—C1—C6109.29 (17)H8A—C8—H8C109.5
N1—C1—C5107.97 (16)H8B—C8—H8C109.5
C7—C1—C5111.59 (19)C2—C9—H9A109.5
C6—C1—C5111.04 (18)C2—C9—H9B109.5
N1—C2—C8105.96 (17)H9A—C9—H9B109.5
N1—C2—C3107.28 (17)C2—C9—H9C109.5
C8—C2—C3110.62 (19)H9A—C9—H9C109.5
N1—C2—C9111.61 (17)H9B—C9—H9C109.5
C8—C2—C9109.71 (19)C15—C10—C11120.8 (2)
C3—C2—C9111.51 (19)C15—C10—H10A119.6
C4—C3—C2113.43 (18)C11—C10—H10A119.6
C4—C3—H3A108.9C12—C11—C10119.08 (18)
C2—C3—H3A108.9C12—C11—C16120.59 (18)
C4—C3—H3B108.9C10—C11—C16120.33 (18)
C2—C3—H3B108.9C11—C12—C13119.65 (19)
H3A—C3—H3B107.7C11—C12—H12A120.2
O1—C4—C3122.5 (2)C13—C12—H12A120.2
O1—C4—C5123.1 (2)C12—C13—C14121.47 (19)
C3—C4—C5114.4 (2)C12—C13—N2117.49 (18)
C4—C5—C1113.22 (18)C14—C13—N2121.03 (18)
C4—C5—H5A108.9C15—C14—C13118.79 (19)
C1—C5—H5A108.9C15—C14—Cl1118.87 (17)
C4—C5—H5B108.9C13—C14—Cl1122.29 (17)
C1—C5—H5B108.9C14—C15—C10120.2 (2)
H5A—C5—H5B107.7C14—C15—H15A119.9
C1—C6—H6A109.5C10—C15—H15A119.9
C1—C6—H6B109.5O3—C16—O2126.28 (19)
H6A—C6—H6B109.5O3—C16—C11117.47 (19)
C1—C6—H6C109.5O2—C16—C11116.24 (19)
H6A—C6—H6C109.5
C2—N1—C1—C773.0 (2)C16—C11—C12—C13178.44 (17)
C2—N1—C1—C6−168.64 (17)C11—C12—C13—C141.6 (3)
C2—N1—C1—C5−50.0 (2)C11—C12—C13—N2−177.04 (18)
C1—N1—C2—C8168.99 (17)O4—N2—C13—C12−47.1 (3)
C1—N1—C2—C350.8 (2)O5—N2—C13—C12131.6 (2)
C1—N1—C2—C9−71.6 (2)O4—N2—C13—C14134.3 (2)
N1—C2—C3—C4−49.4 (2)O5—N2—C13—C14−47.1 (3)
C8—C2—C3—C4−164.50 (19)C12—C13—C14—C15−1.2 (3)
C9—C2—C3—C473.1 (3)N2—C13—C14—C15177.42 (19)
C2—C3—C4—O1−128.3 (2)C12—C13—C14—Cl1176.34 (15)
C2—C3—C4—C554.4 (3)N2—C13—C14—Cl1−5.0 (3)
O1—C4—C5—C1129.6 (2)C13—C14—C15—C10−0.2 (3)
C3—C4—C5—C1−53.1 (3)Cl1—C14—C15—C10−177.79 (16)
N1—C1—C5—C447.4 (2)C11—C10—C15—C141.1 (3)
C7—C1—C5—C4−75.6 (2)C12—C11—C16—O3−1.2 (3)
C6—C1—C5—C4162.25 (19)C10—C11—C16—O3177.94 (19)
C15—C10—C11—C12−0.7 (3)C12—C11—C16—O2179.46 (19)
C15—C10—C11—C16−179.79 (18)C10—C11—C16—O2−1.4 (3)
C10—C11—C12—C13−0.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O3i0.87 (2)1.89 (2)2.750 (2)165
N1—H1B···O2ii0.89 (1)1.77 (1)2.653 (2)171
C3—H3A···O4iii0.972.543.269 (3)132
C8—H8B···O3i0.962.543.297 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O3i0.87 (2)1.89 (2)2.750 (2)165
N1—H1B⋯O2ii0.89 (1)1.77 (1)2.653 (2)171
C3—H3A⋯O4iii0.972.543.269 (3)132
C8—H8B⋯O3i0.962.543.297 (3)136

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Piperidinium 3-hydr-oxy-2-naphthoate.

Authors:  Yong-Tao Wang; Gui-Mei Tang; Yong-Chun Zhang; Wen-Zhu Wan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-13

3.  4-[(E)-(2,4-Difluoro-phen-yl)(hydroxy-imino)meth-yl]piperidinium picrate.

Authors:  Jerry P Jasinski; Ray J Butcher; H S Yathirajan; L Mallesha; K N Mohana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05

4.  4-Carbamoylpiperidinium 5-nitro-salicylate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-15

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Crystal structure of 2-amino-3-ethyl-4,5-di-hydro-1,3-thia-zol-3-ium 3-chloro-benzo-ate.

Authors:  Sara Maira M Hizam; Bohari M Yamin
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-07
  1 in total

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