Literature DB >> 21522633

4-Carbamoylpiperidinium 5-nitro-salicylate.

Graham Smith1, Urs D Wermuth.   

Abstract

In the crystal structure of the title compound, C(6)H(13)N(2)O(+)·C(7)H(4)NO(5) (-), the isonipecotamide cations and the 5-nitro-salicylate anions form hydrogen-bonded chain substructures through head-to-tail piperidinium-carboxyl-ate N-H⋯O hydrogen bonds and through centrosymmetric cyclic head-to-head amide-amide hydrogen-bonding associations [graph set R(2) (2)(8)]. These chains are cross-linked by amide-carboxyl-ate N-H⋯O and piperidinium-nitro N-H⋯O associations, giving a sheet structure.

Entities:  

Year:  2010        PMID: 21522633      PMCID: PMC3050397          DOI: 10.1107/S1600536810050129

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural data on isonipecotamide salts, see: Smith et al. (2010 ▶); Smith & Wermuth (2010a ▶,b ▶,c ▶,d ▶). For structures of 5-nitro­salicylates, see: Smith et al. (2005 ▶). For hydrogen-bonding graph-set and motif classification, see: Etter et al. (1990 ▶); Allen et al. (1998 ▶).

Experimental

Crystal data

C6H13N2O+·C7H4NO5 M = 311.30 Monoclinic, a = 15.0442 (10) Å b = 5.5851 (3) Å c = 17.1939 (10) Å β = 91.466 (6)° V = 1444.22 (15) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 200 K 0.40 × 0.25 × 0.16 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.912, T max = 0.980 9191 measured reflections 2833 independent reflections 1850 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.092 S = 0.95 2833 reflections 219 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810050129/bt5426sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050129/bt5426Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H13N2O+·C7H4NO5F(000) = 656
Mr = 311.30Dx = 1.432 Mg m3
Monoclinic, P21/nMelting point: 463 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 15.0442 (10) ÅCell parameters from 3270 reflections
b = 5.5851 (3) Åθ = 3.6–28.7°
c = 17.1939 (10) ŵ = 0.12 mm1
β = 91.466 (6)°T = 200 K
V = 1444.22 (15) Å3Prism, pale yellow
Z = 40.40 × 0.25 × 0.16 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer2833 independent reflections
Radiation source: Enhance (Mo)X-ray source1850 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.6°
ω scansh = −18→18
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −6→6
Tmin = 0.912, Tmax = 0.980l = −12→21
9191 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 0.95w = 1/[σ2(Fo2) + (0.0486P)2] where P = (Fo2 + 2Fc2)/3
2833 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O41A0.44900 (9)0.0250 (2)0.90133 (7)0.0575 (5)
N1A0.39663 (10)0.5656 (3)0.69549 (9)0.0452 (6)
N41A0.54984 (11)0.2658 (4)0.96084 (10)0.0480 (6)
C2A0.49383 (12)0.5253 (3)0.70538 (12)0.0545 (7)
C3A0.51390 (12)0.3391 (3)0.76686 (10)0.0516 (7)
C4A0.47324 (11)0.4101 (3)0.84420 (9)0.0423 (6)
C5A0.37359 (11)0.4529 (3)0.83207 (10)0.0451 (6)
C6A0.35478 (11)0.6369 (3)0.76956 (10)0.0463 (6)
C41A0.48930 (12)0.2177 (3)0.90488 (10)0.0435 (6)
O20.40541 (10)−0.1530 (2)0.42604 (8)0.0605 (5)
O110.32739 (8)0.1529 (2)0.63160 (7)0.0507 (4)
O120.39253 (9)−0.1469 (3)0.57010 (7)0.0600 (5)
O510.16400 (10)0.7176 (3)0.34253 (8)0.0729 (6)
O520.17024 (9)0.7584 (2)0.46713 (8)0.0562 (5)
N50.19077 (10)0.6528 (3)0.40756 (9)0.0510 (6)
C10.32654 (11)0.1565 (3)0.49283 (9)0.0388 (6)
C20.35489 (12)0.0445 (3)0.42422 (10)0.0460 (6)
C30.32936 (13)0.1368 (4)0.35198 (10)0.0550 (7)
C40.27649 (13)0.3354 (4)0.34625 (10)0.0529 (7)
C50.24816 (11)0.4452 (3)0.41392 (9)0.0423 (6)
C60.27300 (11)0.3580 (3)0.48665 (9)0.0396 (6)
C110.35061 (12)0.0510 (3)0.57113 (10)0.0443 (6)
H4A0.501100.559000.862500.0510*
H11A0.3874 (12)0.689 (4)0.6540 (12)0.065 (6)*
H12A0.3699 (12)0.422 (4)0.6763 (11)0.063 (6)*
H21A0.522600.674600.720000.0650*
H22A0.517700.473300.656300.0650*
H31A0.577800.322300.773900.0620*
H32A0.490000.185800.750100.0620*
H41A0.5753 (13)0.398 (4)0.9620 (11)0.054 (7)*
H42A0.5568 (13)0.147 (4)1.0029 (12)0.075 (7)*
H51A0.344800.303400.817700.0540*
H52A0.348700.507100.880500.0540*
H61A0.291000.652500.761100.0560*
H62A0.377900.791100.786300.0560*
H20.4119 (15)−0.184 (4)0.4809 (14)0.109 (9)*
H30.348500.062600.307000.0660*
H40.259700.396400.297700.0630*
H60.253800.434500.531300.0470*
U11U22U33U12U13U23
O41A0.0736 (9)0.0473 (8)0.0500 (8)0.0056 (7)−0.0280 (7)−0.0127 (6)
N1A0.0518 (10)0.0467 (10)0.0368 (9)−0.0015 (8)−0.0070 (7)−0.0078 (8)
N41A0.0472 (10)0.0463 (10)0.0495 (10)0.0124 (9)−0.0208 (8)−0.0123 (9)
C2A0.0482 (12)0.0624 (13)0.0531 (12)0.0009 (10)0.0056 (9)−0.0120 (10)
C3A0.0439 (11)0.0576 (12)0.0530 (12)0.0122 (9)−0.0014 (9)−0.0134 (10)
C4A0.0421 (10)0.0420 (10)0.0420 (10)0.0090 (8)−0.0125 (8)−0.0149 (8)
C5A0.0422 (10)0.0580 (11)0.0348 (10)0.0155 (9)−0.0066 (8)−0.0066 (9)
C6A0.0429 (10)0.0561 (11)0.0396 (10)0.0127 (9)−0.0066 (8)−0.0080 (9)
C41A0.0418 (10)0.0454 (11)0.0426 (10)0.0189 (9)−0.0139 (8)−0.0195 (9)
O20.0834 (10)0.0489 (8)0.0501 (8)−0.0077 (8)0.0216 (8)−0.0104 (7)
O110.0597 (8)0.0621 (8)0.0303 (7)−0.0163 (7)−0.0002 (6)−0.0097 (6)
O120.0762 (10)0.0563 (8)0.0474 (8)0.0017 (8)0.0024 (7)−0.0007 (7)
O510.0929 (11)0.0800 (11)0.0455 (8)−0.0009 (8)−0.0025 (8)0.0174 (7)
O520.0630 (9)0.0544 (8)0.0516 (9)−0.0081 (7)0.0075 (7)−0.0025 (7)
N50.0580 (10)0.0546 (10)0.0406 (10)−0.0209 (9)0.0067 (8)0.0033 (8)
C10.0423 (10)0.0414 (10)0.0331 (10)−0.0211 (9)0.0064 (7)−0.0067 (8)
C20.0590 (12)0.0407 (10)0.0390 (11)−0.0221 (9)0.0148 (9)−0.0066 (9)
C30.0810 (15)0.0528 (12)0.0322 (11)−0.0223 (11)0.0224 (10)−0.0069 (9)
C40.0715 (14)0.0585 (12)0.0291 (10)−0.0264 (11)0.0099 (9)0.0020 (9)
C50.0483 (11)0.0438 (11)0.0352 (10)−0.0184 (9)0.0073 (8)0.0017 (8)
C60.0430 (10)0.0457 (10)0.0302 (9)−0.0230 (9)0.0056 (7)−0.0079 (8)
C110.0453 (11)0.0505 (11)0.0369 (11)−0.0208 (9)0.0001 (8)−0.0070 (9)
O41A—C41A1.236 (2)C2A—H22A0.9700
O2—C21.340 (2)C2A—H21A0.9700
O11—C111.243 (2)C3A—H31A0.9700
O12—C111.273 (2)C3A—H32A0.9700
O51—N51.233 (2)C4A—H4A0.9800
O52—N51.228 (2)C5A—H51A0.9700
O2—H20.96 (2)C5A—H52A0.9700
N1A—C6A1.489 (2)C6A—H62A0.9700
N1A—C2A1.485 (2)C6A—H61A0.9700
N41A—C41A1.335 (2)C1—C61.386 (2)
N1A—H12A0.95 (2)C1—C111.505 (2)
N1A—H11A1.00 (2)C1—C21.411 (2)
N41A—H41A0.83 (2)C2—C31.390 (3)
N41A—H42A0.99 (2)C3—C41.367 (3)
N5—C51.448 (2)C4—C51.392 (2)
C2A—C3A1.508 (3)C5—C61.385 (2)
C3A—C4A1.530 (2)C3—H30.9300
C4A—C5A1.527 (2)C4—H40.9300
C4A—C41A1.513 (2)C6—H60.9300
C5A—C6A1.509 (2)
C2—O2—H2102.4 (13)C5A—C4A—H4A109.00
C2A—N1A—C6A112.29 (14)C3A—C4A—H4A109.00
C2A—N1A—H12A108.5 (12)C4A—C5A—H52A109.00
C6A—N1A—H11A111.8 (12)C6A—C5A—H51A109.00
H11A—N1A—H12A106.5 (17)C4A—C5A—H51A109.00
C6A—N1A—H12A109.7 (11)C6A—C5A—H52A109.00
C2A—N1A—H11A107.8 (11)H51A—C5A—H52A108.00
H41A—N41A—H42A122.7 (18)H61A—C6A—H62A108.00
C41A—N41A—H42A116.8 (12)C5A—C6A—H61A110.00
C41A—N41A—H41A120.1 (13)C5A—C6A—H62A110.00
O51—N5—O52122.14 (16)N1A—C6A—H61A109.00
O51—N5—C5118.93 (15)N1A—C6A—H62A110.00
O52—N5—C5118.93 (14)C2—C1—C11120.22 (15)
N1A—C2A—C3A111.33 (15)C6—C1—C11120.82 (14)
C2A—C3A—C4A110.68 (14)C2—C1—C6118.90 (15)
C3A—C4A—C41A110.79 (14)O2—C2—C1121.94 (15)
C5A—C4A—C41A110.14 (14)O2—C2—C3118.03 (16)
C3A—C4A—C5A109.56 (13)C1—C2—C3120.02 (16)
C4A—C5A—C6A111.69 (14)C2—C3—C4120.82 (17)
N1A—C6A—C5A110.57 (14)C3—C4—C5119.17 (16)
O41A—C41A—N41A122.38 (17)N5—C5—C6119.77 (14)
N41A—C41A—C4A116.62 (16)C4—C5—C6121.25 (16)
O41A—C41A—C4A120.99 (15)N5—C5—C4118.98 (15)
N1A—C2A—H21A109.00C1—C6—C5119.84 (15)
N1A—C2A—H22A109.00O11—C11—C1120.16 (15)
C3A—C2A—H21A109.00O12—C11—C1115.81 (15)
C3A—C2A—H22A109.00O11—C11—O12123.99 (16)
H21A—C2A—H22A108.00C2—C3—H3120.00
C2A—C3A—H32A110.00C4—C3—H3120.00
C4A—C3A—H31A109.00C3—C4—H4120.00
C2A—C3A—H31A110.00C5—C4—H4120.00
C4A—C3A—H32A109.00C1—C6—H6120.00
H31A—C3A—H32A108.00C5—C6—H6120.00
C41A—C4A—H4A109.00
C6A—N1A—C2A—C3A56.83 (19)C6—C1—C2—C30.2 (3)
C2A—N1A—C6A—C5A−56.01 (18)C11—C1—C2—O2−1.8 (3)
O51—N5—C5—C44.5 (2)C11—C1—C2—C3177.28 (17)
O51—N5—C5—C6−174.74 (16)C2—C1—C6—C50.2 (2)
O52—N5—C5—C4−175.57 (16)C11—C1—C6—C5−176.88 (16)
O52—N5—C5—C65.2 (2)C2—C1—C11—O11178.30 (16)
N1A—C2A—C3A—C4A−56.37 (19)C2—C1—C11—O12−3.8 (2)
C2A—C3A—C4A—C5A55.43 (18)C6—C1—C11—O11−4.7 (3)
C2A—C3A—C4A—C41A177.15 (14)C6—C1—C11—O12173.26 (16)
C5A—C4A—C41A—O41A49.2 (2)O2—C2—C3—C4178.81 (18)
C5A—C4A—C41A—N41A−132.02 (17)C1—C2—C3—C4−0.3 (3)
C3A—C4A—C41A—O41A−72.2 (2)C2—C3—C4—C50.0 (3)
C3A—C4A—C5A—C6A−55.62 (18)C3—C4—C5—N5−178.83 (17)
C41A—C4A—C5A—C6A−177.72 (14)C3—C4—C5—C60.4 (3)
C3A—C4A—C41A—N41A106.61 (18)N5—C5—C6—C1178.76 (15)
C4A—C5A—C6A—N1A55.72 (18)C4—C5—C6—C1−0.5 (3)
C6—C1—C2—O2−178.84 (16)
D—H···AD—HH···AD···AD—H···A
N1A—H11A···O12i1.00 (2)1.71 (2)2.688 (2)164.2 (18)
N1A—H12A···O110.95 (2)1.80 (2)2.747 (2)173.9 (17)
N41A—H41A···O52ii0.83 (2)2.39 (2)3.216 (2)170.8 (19)
N41A—H42A···O41Aiii0.99 (2)1.91 (2)2.873 (2)164.8 (18)
O2—H2···O120.96 (2)1.58 (2)2.4897 (18)156 (2)
C2A—H22A···O2iv0.972.573.450 (2)150
C6A—H61A···O11v0.972.603.263 (2)126
C6A—H62A···O41Ai0.972.583.417 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H11A⋯O12i1.00 (2)1.71 (2)2.688 (2)164.2 (18)
N1A—H12A⋯O110.95 (2)1.80 (2)2.747 (2)173.9 (17)
N41A—H41A⋯O52ii0.83 (2)2.39 (2)3.216 (2)170.8 (19)
N41A—H42A⋯O41Aiii0.99 (2)1.91 (2)2.873 (2)164.8 (18)
O2—H2⋯O120.96 (2)1.58 (2)2.4897 (18)156 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Hydrogen bonding in the anhydrous 1:1 proton-transfer compounds of isonipecotamide with nitro-substituted benzoic acids: the salts of the three isomeric mononitrobenzoic acids and of 3,5-dinitrobenzoic acid.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr C       Date:  2010-11-19       Impact factor: 1.172

4.  Anhydrous 1:1 proton-transfer compounds of isonipecotamide with picric acid and 3,5-dinitrosalicylic acid: 4-carbamoylpiperidinium 2,4,6-trinitrophenolate and two polymorphs of 4-carbamoylpiperidinium 2-carboxy-4,6-dinitrophenolate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr C       Date:  2010-11-19       Impact factor: 1.172

5.  4-Carbamoylpiperidinium acetate monohydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

6.  Bis(4-carbamoylpiperidinium) biphenyl-4,4'-disulfonate.

Authors:  Graham Smith; Urs D Wermuth; David J Young
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

7.  4-Carbamoylpiperidinium phenyl-acetate hemihydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  4-Carbamoylpiperidinium 2-carb-oxy-benzoate-benzene-1,2-dicarb-oxy-lic acid (1/1).

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-05

2.  2,2,6,6-Tetra-methyl-4-oxopiperidin-1-ium 4-chloro-3-nitro-benzoate.

Authors:  Bohari M Yamin; Norsakina Z Zulkifli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06
  2 in total

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