Literature DB >> 26090175

Crystal structure of 2-amino-3-ethyl-4,5-di-hydro-1,3-thia-zol-3-ium 3-chloro-benzo-ate.

Sara Maira M Hizam1, Bohari M Yamin1.   

Abstract

The title salt, C5H11N2S(+)·C7H4ClO2 (-), comprises a 2-amino-3-ethyl-4,5-di-hydro-1,3-thia-zol-3-ium cation in which the five-membered ring adopts an envelope conformation with the methyl-ene C adjacent to the S atom being the flap, and a planar 3-chloro-benzoate anion (r.m.s. deviation for the 10 non-H atoms = 0.021 Å). The most prominent feature of the crystal packing are N-H⋯O hydrogen bonds whereby the two amine H atoms bridge two carboxyl-ate O atoms resulting in the formation of a centrosymmetric 12-membered {⋯HNH⋯OCO}2 synthon involving two cations and two anions. These aggregates are linked by C-H⋯O inter-actions to form a supra-molecular chain along the a-axis direction.

Entities:  

Keywords:  2-amino-3-ethyl-4,5-di­hydro-1,3-thia­zol-3-ium cation; 3-chloro­benzoate anion; crystal structure; hydrogen bonding; salt

Year:  2015        PMID: 26090175      PMCID: PMC4459344          DOI: 10.1107/S2056989015008385

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the crystal structure of a related compound, see: Yamin & Zulkifli (2011 ▸).

Experimental

Crystal data

C5H11N2S+·C7H4ClO2 M = 286.77 Triclinic, a = 7.3376 (7) Å b = 8.7987 (9) Å c = 11.7068 (11) Å α = 70.728 (3)° β = 80.269 (3)° γ = 71.531 (3)° V = 674.95 (11) Å3 Z = 2 Mo Kα radiation μ = 0.43 mm−1 T = 296 K 0.37 × 0.32 × 0.06 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.856, T max = 0.975 16295 measured reflections 3430 independent reflections 1957 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.142 S = 1.02 3430 reflections 171 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.26 e Å−3

Data collection: SMART (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015008385/tk5367sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008385/tk5367Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015008385/tk5367Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015008385/tk5367fig1.tif The mol­ecular structure of the title salt with displacement ellipsoids drawn at 50% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015008385/tk5367fig2.tif A view of the crystal packing of the title salt viewed down b axis. The dashed lines indicate hydrogen bonds. CCDC reference: 1062249 Additional supporting information: crystallographic information; 3D view; checkCIF report
C5H11N2S+·C7H4ClO2Z = 2
Mr = 286.77F(000) = 300
Triclinic, P1Dx = 1.411 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3376 (7) ÅCell parameters from 6990 reflections
b = 8.7987 (9) Åθ = 2.9–28.6°
c = 11.7068 (11) ŵ = 0.43 mm1
α = 70.728 (3)°T = 296 K
β = 80.269 (3)°Slab, colourless
γ = 71.531 (3)°0.37 × 0.32 × 0.06 mm
V = 674.95 (11) Å3
Bruker SMART APEX CCD area-detector diffractometer3430 independent reflections
Radiation source: fine-focus sealed tube1957 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.064
Detector resolution: 83.66 pixels mm-1θmax = 28.6°, θmin = 2.9°
ω scanh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −11→11
Tmin = 0.856, Tmax = 0.975l = −15→15
16295 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.063Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0715P)2] where P = (Fo2 + 2Fc2)/3
3430 reflections(Δ/σ)max < 0.001
171 parametersΔρmax = 0.31 e Å3
2 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.18120 (11)−0.25267 (10)1.66658 (6)0.0724 (3)
S10.48369 (9)0.37155 (8)0.90259 (5)0.0493 (2)
O11.0531 (3)−0.2998 (2)1.16212 (16)0.0570 (5)
O20.9540 (3)−0.0771 (3)1.22844 (19)0.0855 (7)
N10.4326 (3)0.1591 (3)1.10804 (19)0.0523 (6)
N20.7549 (3)0.1491 (3)1.0431 (2)0.0514 (6)
H2B0.835 (3)0.189 (3)0.9867 (19)0.064 (9)*
H2C0.810 (3)0.068 (2)1.1024 (17)0.059 (8)*
C11.1263 (3)−0.3301 (3)1.3595 (2)0.0383 (5)
C21.2154 (3)−0.4996 (3)1.3822 (2)0.0459 (6)
H2A1.2237−0.55121.32300.055*
C31.2921 (4)−0.5927 (3)1.4918 (2)0.0545 (7)
H3A1.3509−0.70721.50650.065*
C41.2829 (4)−0.5184 (3)1.5798 (2)0.0523 (7)
H4A1.3353−0.58121.65370.063*
C51.1949 (3)−0.3501 (3)1.5564 (2)0.0441 (6)
C61.1164 (3)−0.2547 (3)1.4475 (2)0.0416 (6)
H6A1.0571−0.14051.43350.050*
C71.0367 (3)−0.2280 (3)1.2403 (2)0.0468 (6)
C80.5708 (3)0.2094 (3)1.0315 (2)0.0406 (6)
C90.2384 (4)0.2374 (4)1.0666 (3)0.0713 (9)
H9A0.14720.25951.13360.086*
H9B0.20100.16351.03510.086*
C100.2390 (3)0.3967 (4)0.9701 (3)0.0609 (8)
H10A0.19960.48981.00430.073*
H10B0.15110.41840.90960.073*
C110.4633 (5)0.0131 (4)1.2191 (3)0.0694 (9)
H11A0.3912−0.06121.21730.083*
H11B0.5988−0.04861.22000.083*
C120.4029 (5)0.0639 (4)1.3300 (3)0.0829 (10)
H12A0.4251−0.03381.39950.124*
H12B0.26830.12321.33030.124*
H12C0.47580.13571.33300.124*
U11U22U33U12U13U23
Cl10.0822 (6)0.0905 (6)0.0555 (5)−0.0246 (5)−0.0093 (4)−0.0333 (4)
S10.0453 (4)0.0562 (4)0.0395 (4)−0.0020 (3)−0.0132 (3)−0.0117 (3)
O10.0605 (11)0.0701 (13)0.0473 (10)−0.0239 (9)−0.0116 (9)−0.0172 (10)
O20.1099 (18)0.0587 (14)0.0682 (14)0.0216 (12)−0.0489 (13)−0.0156 (10)
N10.0438 (12)0.0556 (14)0.0474 (12)−0.0072 (10)−0.0040 (10)−0.0085 (10)
N20.0411 (13)0.0547 (15)0.0449 (13)0.0008 (11)−0.0117 (11)−0.0065 (11)
C10.0318 (12)0.0416 (14)0.0396 (13)−0.0133 (10)−0.0043 (10)−0.0060 (10)
C20.0431 (14)0.0437 (15)0.0527 (15)−0.0128 (11)−0.0046 (12)−0.0154 (12)
C30.0549 (16)0.0369 (15)0.0627 (18)−0.0070 (12)−0.0120 (14)−0.0050 (13)
C40.0476 (15)0.0547 (18)0.0445 (14)−0.0119 (13)−0.0136 (12)0.0011 (13)
C50.0371 (13)0.0566 (16)0.0417 (14)−0.0189 (12)−0.0008 (11)−0.0138 (12)
C60.0366 (13)0.0378 (13)0.0473 (14)−0.0087 (10)−0.0045 (11)−0.0096 (11)
C70.0361 (13)0.0573 (18)0.0436 (14)−0.0125 (12)−0.0091 (11)−0.0080 (13)
C80.0463 (15)0.0370 (13)0.0376 (13)−0.0010 (11)−0.0101 (11)−0.0167 (11)
C90.0454 (17)0.095 (2)0.0659 (19)−0.0181 (16)−0.0046 (14)−0.0148 (18)
C100.0399 (15)0.0683 (19)0.0718 (19)−0.0033 (13)−0.0153 (14)−0.0231 (16)
C110.074 (2)0.0483 (17)0.068 (2)−0.0075 (15)−0.0001 (16)−0.0059 (15)
C120.100 (3)0.075 (2)0.063 (2)−0.0175 (19)−0.0161 (19)−0.0080 (18)
Cl1—C51.743 (3)C3—H3A0.9300
S1—C81.746 (2)C4—C51.368 (4)
S1—C101.811 (3)C4—H4A0.9300
O1—C71.245 (3)C5—C61.377 (3)
O2—C71.243 (3)C6—H6A0.9300
N1—C81.320 (3)C9—C101.483 (4)
N1—C91.460 (3)C9—H9A0.9700
N1—C111.485 (3)C9—H9B0.9700
N2—C81.298 (3)C10—H10A0.9700
N2—H2B0.866 (10)C10—H10B0.9700
N2—H2C0.862 (10)C11—C121.465 (4)
C1—C61.379 (3)C11—H11A0.9700
C1—C21.379 (3)C11—H11B0.9700
C1—C71.514 (3)C12—H12A0.9600
C2—C31.376 (3)C12—H12B0.9600
C2—H2A0.9300C12—H12C0.9600
C3—C41.373 (4)
C8—S1—C1090.90 (12)N2—C8—N1126.9 (2)
C8—N1—C9115.4 (2)N2—C8—S1120.1 (2)
C8—N1—C11125.1 (2)N1—C8—S1112.98 (17)
C9—N1—C11118.6 (2)N1—C9—C10107.9 (2)
C8—N2—H2B120.1 (19)N1—C9—H9A110.1
C8—N2—H2C126.2 (18)C10—C9—H9A110.1
H2B—N2—H2C114 (3)N1—C9—H9B110.1
C6—C1—C2119.3 (2)C10—C9—H9B110.1
C6—C1—C7120.2 (2)H9A—C9—H9B108.4
C2—C1—C7120.5 (2)C9—C10—S1106.45 (18)
C3—C2—C1120.3 (2)C9—C10—H10A110.4
C3—C2—H2A119.8S1—C10—H10A110.4
C1—C2—H2A119.8C9—C10—H10B110.4
C4—C3—C2120.7 (2)S1—C10—H10B110.4
C4—C3—H3A119.7H10A—C10—H10B108.6
C2—C3—H3A119.7C12—C11—N1112.1 (3)
C5—C4—C3118.6 (2)C12—C11—H11A109.2
C5—C4—H4A120.7N1—C11—H11A109.2
C3—C4—H4A120.7C12—C11—H11B109.2
C4—C5—C6121.6 (2)N1—C11—H11B109.2
C4—C5—Cl1119.55 (19)H11A—C11—H11B107.9
C6—C5—Cl1118.8 (2)C11—C12—H12A109.5
C5—C6—C1119.5 (2)C11—C12—H12B109.5
C5—C6—H6A120.3H12A—C12—H12B109.5
C1—C6—H6A120.3C11—C12—H12C109.5
O2—C7—O1125.3 (2)H12A—C12—H12C109.5
O2—C7—C1116.6 (2)H12B—C12—H12C109.5
O1—C7—C1118.1 (2)
C6—C1—C2—C30.5 (4)C2—C1—C7—O1−3.0 (3)
C7—C1—C2—C3−178.3 (2)C9—N1—C8—N2−174.0 (3)
C1—C2—C3—C4−0.6 (4)C11—N1—C8—N2−5.0 (4)
C2—C3—C4—C50.3 (4)C9—N1—C8—S14.8 (3)
C3—C4—C5—C60.0 (4)C11—N1—C8—S1173.7 (2)
C3—C4—C5—Cl1179.99 (19)C10—S1—C8—N2−171.3 (2)
C4—C5—C6—C1−0.1 (4)C10—S1—C8—N19.8 (2)
Cl1—C5—C6—C1179.95 (18)C8—N1—C9—C10−20.9 (4)
C2—C1—C6—C5−0.2 (3)C11—N1—C9—C10169.4 (3)
C7—C1—C6—C5178.6 (2)N1—C9—C10—S126.1 (3)
C6—C1—C7—O2−1.0 (3)C8—S1—C10—C9−20.7 (2)
C2—C1—C7—O2177.8 (2)C8—N1—C11—C12112.8 (3)
C6—C1—C7—O1178.2 (2)C9—N1—C11—C12−78.6 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O1i0.87 (2)1.89 (2)2.730 (3)164 (2)
N2—H2C···O20.86 (2)1.83 (2)2.680 (3)169 (2)
C10—H10B···O1ii0.972.463.297 (4)145
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H2BO1i 0.87(2)1.89(2)2.730(3)164(2)
N2H2CO20.86(2)1.83(2)2.680(3)169(2)
C10H10BO1ii 0.972.463.297(4)145

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2,6,6-Tetra-methyl-4-oxopiperidin-1-ium 4-chloro-3-nitro-benzoate.

Authors:  Bohari M Yamin; Norsakina Z Zulkifli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-06

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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