Literature DB >> 21577832

4-[(E)-(2,4-Difluoro-phen-yl)(hydroxy-imino)meth-yl]piperidinium picrate.

Jerry P Jasinski, Ray J Butcher, H S Yathirajan, L Mallesha, K N Mohana.   

Abstract

The title compound, C(12)H(15)F(2)N(2)O(+)·C(6)H(2)N(3)O(7) (-), a picrate salt of 4-[(E)-(2,4-difluoro-phen-yl)(hydroxy-imino)meth-yl]piper-idine, crystallizes with two independent mol-ecules in a cation-anion pair in the asymmetric unit. In the cation, a methyl group is tris-ubstituted by hydroxy-imino, piperidin-4-yl and 2,4-difluoro-phenyl groups, the latter of which contains an F atom disordered over two positions in the ring [occupancy ratio 0.631 (4):0.369 (4)]. The mean plane of the hydr-oxy group is in a synclinical conformation nearly orthogonal [N-C-C-C = 72.44 (19)°] to the mean plane of the piperidine ring, which adopts a slightly distorted chair conformation. The dihedral angle between the mean plane of the 2,4-difluoro-phenyl and piperidin-4-yl groups is 60.2 (3)°. In the picrate anion, the mean planes of the two o-NO(2) and single p-NO(2) groups adopt twist angles of 5.7 (2), 25.3 (7) and 8.3 (6)°, respectively, with the attached planar benzene ring. The dihedral angle between the mean planes of the benzene ring in the picrate anion and those in the hydroxy-imino, piperidin-4-yl and 2,4-difluoro-phenyl groups in the cation are 84.9 (7), 78.9 (4) and 65.1 (1)°, respectively. Extensive hydrogen-bond inter-actions occur between the cation-anion pair, which help to establish the crystal packing in the unit cell. This includes dual three-center hydrogen bonds with the piperidin-4-yl group, the phenolate and o-NO(2) O atoms of the picrate anion at different positions in the unit cell, which form separate N-H⋯(O,O) bifurcated inter-molecular hydrogen-bond inter-actions. Also, the hydr-oxy group forms a separate hydrogen bond with a nearby piperidin-4-yl N atom, thus providing two groups of hydrogen bonds, which form an infinite two-dimensional network along (011).

Entities:  

Year:  2009        PMID: 21577832      PMCID: PMC2970333          DOI: 10.1107/S1600536809035363

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

(Z)-(2,4-Difluoro­phen­yl)(piperidin-4-yl)methanone oxime is an inter­mediate in the preparation of risperidone, an anti­psychotic used to treat schizophrenia, see: Umbricht & Kane, (1995 ▶). For related structures, see: Hu et al. (2008 ▶); Jottier et al. (1992 ▶); Naveen et al. (2007 ▶); Ravikumar & Sridhar (2006 ▶); Yathirajan et al. (2005 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶) and for Mogul, see: Bruno et al. (2004 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H15F2N2O+·C6H2N3O7 − M = 469.37 Monoclinic, a = 6.0926 (4) Å b = 13.5364 (8) Å c = 24.0417 (14) Å β = 92.671 (6)° V = 1980.63 (19) Å3 Z = 4 Cu Kα radiation μ = 1.20 mm−1 T = 110 K 0.49 × 0.45 × 0.38 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2009 ▶) T min = 0.733, T max = 1.000 7628 measured reflections 3910 independent reflections 3475 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.115 S = 1.05 3910 reflections 303 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809035363/zq2003sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035363/zq2003Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15F2N2O+·C6H2N3O7F(000) = 968
Mr = 469.37Dx = 1.574 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 4482 reflections
a = 6.0926 (4) Åθ = 4.9–74.1°
b = 13.5364 (8) ŵ = 1.20 mm1
c = 24.0417 (14) ÅT = 110 K
β = 92.671 (6)°Chunk, pale yellow
V = 1980.63 (19) Å30.49 × 0.45 × 0.38 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector3910 independent reflections
Radiation source: Enhance (Cu) X-ray Source3475 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 10.5081 pixels mm-1θmax = 74.1°, θmin = 4.9°
ω scansh = −6→7
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −11→16
Tmin = 0.734, Tmax = 1.000l = −29→29
7628 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0619P)2 + 1.0569P] where P = (Fo2 + 2Fc2)/3
3910 reflections(Δ/σ)max < 0.001
303 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.34d (release 27-02-2009 CrysAlis171 .NET) (compiled Feb 27 2009,15:38:38) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F1A0.4117 (3)0.58470 (13)0.70084 (6)0.0326 (4)0.631 (4)
F1B−0.0826 (5)0.4942 (2)0.55863 (11)0.0326 (4)0.37
F2−0.2362 (2)0.41781 (9)0.74432 (5)0.0519 (4)
O10.3558 (2)0.44002 (9)0.54602 (6)0.0389 (3)
H1A0.41710.41590.51850.058*
N10.3999 (3)0.54236 (11)0.54919 (6)0.0309 (3)
N20.5153 (2)0.88427 (9)0.55578 (5)0.0199 (3)
H2A0.56530.86650.52170.024*
H2B0.53900.95090.56040.024*
C10.1660 (3)0.53694 (11)0.62919 (6)0.0214 (3)
C20.2218 (3)0.53902 (12)0.68601 (7)0.0249 (3)
H20.35590.56950.69820.030*0.369 (4)
C30.0908 (3)0.49879 (12)0.72519 (7)0.0299 (4)
H3A0.13310.49990.76370.036*
C4−0.1038 (3)0.45693 (13)0.70620 (8)0.0332 (4)
C5−0.1698 (3)0.45176 (13)0.65070 (8)0.0321 (4)
H5A−0.30520.42180.63900.039*
C6−0.0313 (3)0.49188 (12)0.61243 (7)0.0261 (3)
H6−0.07230.48850.57390.031*0.631 (4)
C70.3115 (3)0.58538 (12)0.58942 (6)0.0221 (3)
C80.3575 (2)0.69523 (11)0.59583 (6)0.0206 (3)
H8A0.30340.71690.63250.025*
C90.2332 (3)0.75380 (13)0.55000 (7)0.0273 (4)
H9A0.28100.73180.51320.033*
H9B0.07380.74050.55160.033*
C100.2742 (3)0.86397 (13)0.55644 (8)0.0286 (4)
H10A0.19640.90010.52560.034*
H10B0.21670.88730.59200.034*
C110.6425 (3)0.82942 (11)0.60045 (7)0.0237 (3)
H11A0.59790.85240.63740.028*
H11B0.80120.84320.59770.028*
C120.6024 (3)0.71882 (11)0.59519 (7)0.0230 (3)
H12A0.68120.68420.62640.028*
H12B0.66120.69470.56000.028*
O1B0.48994 (19)0.91121 (8)0.44016 (5)0.0257 (3)
O21B0.7803 (2)0.77495 (10)0.47615 (5)0.0327 (3)
O22B1.01401 (18)0.74502 (9)0.41357 (5)0.0262 (3)
O41B0.7531 (3)0.69201 (10)0.22667 (5)0.0441 (4)
O42B0.4368 (3)0.74855 (11)0.19724 (5)0.0426 (4)
O61B−0.0029 (2)0.93104 (14)0.31606 (7)0.0563 (5)
O62B0.1039 (2)0.97294 (11)0.39934 (8)0.0495 (4)
N2B0.8313 (2)0.77022 (10)0.42725 (5)0.0207 (3)
N4B0.5790 (3)0.73383 (11)0.23427 (6)0.0322 (4)
N6B0.1329 (2)0.93020 (11)0.35541 (7)0.0327 (4)
C1B0.4929 (2)0.86302 (11)0.39577 (6)0.0197 (3)
C2B0.6651 (2)0.79351 (11)0.38377 (6)0.0191 (3)
C3B0.6944 (3)0.75188 (11)0.33251 (6)0.0219 (3)
H3BA0.81740.71070.32660.026*
C4B0.5401 (3)0.77135 (12)0.28969 (6)0.0249 (3)
C5B0.3567 (3)0.82860 (12)0.29821 (7)0.0268 (4)
H5BA0.24810.83770.26900.032*
C6B0.3327 (3)0.87222 (11)0.34922 (7)0.0241 (3)
U11U22U33U12U13U23
F1A0.0361 (8)0.0377 (8)0.0237 (7)−0.0054 (6)−0.0035 (5)−0.0009 (6)
F1B0.0361 (8)0.0377 (8)0.0237 (7)−0.0054 (6)−0.0035 (5)−0.0009 (6)
F20.0645 (8)0.0379 (6)0.0566 (8)−0.0099 (6)0.0386 (6)0.0049 (5)
O10.0580 (8)0.0199 (6)0.0410 (7)−0.0143 (6)0.0276 (6)−0.0133 (5)
N10.0441 (8)0.0187 (7)0.0313 (7)−0.0118 (6)0.0156 (6)−0.0087 (6)
N20.0251 (6)0.0157 (6)0.0189 (6)0.0022 (5)0.0021 (5)0.0010 (5)
C10.0263 (8)0.0147 (7)0.0235 (8)0.0008 (6)0.0064 (6)−0.0009 (6)
C20.0305 (8)0.0187 (7)0.0259 (8)0.0016 (6)0.0055 (6)−0.0020 (6)
C30.0466 (10)0.0196 (8)0.0243 (8)0.0054 (7)0.0104 (7)0.0013 (6)
C40.0428 (10)0.0196 (8)0.0390 (10)0.0010 (7)0.0229 (8)0.0028 (7)
C50.0254 (8)0.0229 (8)0.0488 (11)−0.0027 (7)0.0106 (7)−0.0037 (7)
C60.0282 (8)0.0209 (8)0.0293 (8)0.0014 (6)0.0040 (7)−0.0026 (6)
C70.0259 (7)0.0205 (8)0.0203 (7)−0.0040 (6)0.0032 (6)−0.0024 (6)
C80.0265 (8)0.0183 (7)0.0175 (7)−0.0021 (6)0.0050 (6)−0.0023 (6)
C90.0177 (7)0.0291 (9)0.0347 (9)0.0012 (6)−0.0053 (6)−0.0001 (7)
C100.0221 (8)0.0257 (8)0.0378 (9)0.0083 (6)0.0004 (7)0.0045 (7)
C110.0259 (8)0.0185 (7)0.0259 (8)−0.0014 (6)−0.0080 (6)0.0022 (6)
C120.0238 (8)0.0164 (7)0.0277 (8)−0.0002 (6)−0.0077 (6)0.0025 (6)
O1B0.0371 (6)0.0189 (5)0.0212 (5)0.0061 (5)0.0042 (5)0.0021 (4)
O21B0.0333 (6)0.0485 (8)0.0163 (5)0.0145 (6)0.0005 (5)−0.0001 (5)
O22B0.0217 (5)0.0304 (6)0.0266 (6)0.0043 (5)0.0024 (4)−0.0007 (5)
O41B0.0744 (10)0.0356 (7)0.0227 (6)0.0128 (7)0.0063 (6)−0.0007 (5)
O42B0.0634 (9)0.0424 (8)0.0206 (6)−0.0175 (7)−0.0141 (6)0.0038 (5)
O61B0.0276 (7)0.0832 (12)0.0574 (9)0.0107 (7)−0.0072 (6)0.0273 (9)
O62B0.0328 (7)0.0341 (8)0.0810 (11)0.0108 (6)−0.0029 (7)−0.0201 (8)
N2B0.0226 (6)0.0205 (6)0.0189 (6)0.0015 (5)0.0000 (5)−0.0005 (5)
N4B0.0563 (10)0.0218 (7)0.0179 (7)−0.0109 (7)−0.0037 (6)0.0033 (5)
N6B0.0222 (7)0.0233 (7)0.0525 (10)−0.0023 (6)−0.0006 (6)0.0156 (7)
C1B0.0239 (7)0.0154 (7)0.0202 (7)−0.0029 (6)0.0028 (6)0.0041 (5)
C2B0.0213 (7)0.0175 (7)0.0183 (7)−0.0028 (6)−0.0002 (5)0.0029 (6)
C3B0.0289 (8)0.0169 (7)0.0199 (7)−0.0026 (6)0.0015 (6)0.0008 (6)
C4B0.0373 (9)0.0192 (7)0.0180 (7)−0.0076 (7)−0.0019 (6)0.0020 (6)
C5B0.0300 (8)0.0243 (8)0.0253 (8)−0.0098 (6)−0.0086 (6)0.0092 (6)
C6B0.0216 (7)0.0188 (7)0.0318 (8)−0.0019 (6)−0.0007 (6)0.0081 (6)
F2—C41.3563 (19)C10—H10A0.9900
O1—N11.4126 (18)C10—H10B0.9900
O1—H1A0.8400C11—C121.521 (2)
N1—C71.270 (2)C11—H11A0.9900
N2—C111.4926 (19)C11—H11B0.9900
N2—C101.495 (2)C12—H12A0.9900
N2—H2A0.9200C12—H12B0.9900
N2—H2B0.9200O1B—C1B1.2517 (19)
C1—C61.391 (2)O21B—N2B1.2317 (17)
C1—C21.393 (2)O22B—N2B1.2240 (17)
C1—C71.486 (2)O41B—N4B1.224 (2)
C2—C31.375 (2)O42B—N4B1.229 (2)
C2—H20.9500O61B—N6B1.227 (2)
C3—C41.373 (3)O62B—N6B1.224 (2)
C3—H3A0.9500N2B—C2B1.4556 (19)
C4—C51.377 (3)N4B—C4B1.456 (2)
C5—C61.388 (2)N6B—C6B1.462 (2)
C5—H5A0.9500C1B—C2B1.448 (2)
C6—H60.9500C1B—C6B1.456 (2)
C7—C81.520 (2)C2B—C3B1.374 (2)
C8—C121.526 (2)C3B—C4B1.387 (2)
C8—C91.529 (2)C3B—H3BA0.9500
C8—H8A1.0000C4B—C5B1.383 (3)
C9—C101.519 (2)C5B—C6B1.375 (2)
C9—H9A0.9900C5B—H5BA0.9500
C9—H9B0.9900
N1—O1—H1A109.5C9—C10—H10A109.7
C7—N1—O1113.86 (13)N2—C10—H10B109.7
C11—N2—C10112.24 (12)C9—C10—H10B109.7
C11—N2—H2A109.2H10A—C10—H10B108.2
C10—N2—H2A109.2N2—C11—C12110.71 (12)
C11—N2—H2B109.2N2—C11—H11A109.5
C10—N2—H2B109.2C12—C11—H11A109.5
H2A—N2—H2B107.9N2—C11—H11B109.5
C6—C1—C2117.46 (14)C12—C11—H11B109.5
C6—C1—C7122.72 (14)H11A—C11—H11B108.1
C2—C1—C7119.78 (14)C11—C12—C8111.00 (13)
C3—C2—C1122.77 (16)C11—C12—H12A109.4
C3—C2—H2118.6C8—C12—H12A109.4
C1—C2—H2118.6C11—C12—H12B109.4
C4—C3—C2117.09 (16)C8—C12—H12B109.4
C4—C3—H3A121.5H12A—C12—H12B108.0
C2—C3—H3A121.5O22B—N2B—O21B122.94 (13)
F2—C4—C3117.88 (17)O22B—N2B—C2B118.59 (12)
F2—C4—C5118.62 (17)O21B—N2B—C2B118.45 (13)
C3—C4—C5123.49 (16)O41B—N4B—O42B123.60 (15)
C4—C5—C6117.61 (16)O41B—N4B—C4B118.50 (14)
C4—C5—H5A121.2O42B—N4B—C4B117.86 (17)
C6—C5—H5A121.2O62B—N6B—O61B122.80 (16)
C5—C6—C1121.57 (16)O62B—N6B—C6B119.71 (15)
C5—C6—H6119.2O61B—N6B—C6B117.45 (17)
C1—C6—H6119.2O1B—C1B—C2B123.23 (14)
N1—C7—C1125.05 (14)O1B—C1B—C6B125.10 (14)
N1—C7—C8116.31 (14)C2B—C1B—C6B111.61 (13)
C1—C7—C8118.63 (13)C3B—C2B—C1B124.81 (14)
C7—C8—C12112.30 (13)C3B—C2B—N2B116.10 (14)
C7—C8—C9110.57 (13)C1B—C2B—N2B118.93 (13)
C12—C8—C9109.62 (12)C2B—C3B—C4B118.41 (15)
C7—C8—H8A108.1C2B—C3B—H3BA120.8
C12—C8—H8A108.1C4B—C3B—H3BA120.8
C9—C8—H8A108.1C5B—C4B—C3B121.40 (15)
C10—C9—C8111.22 (13)C5B—C4B—N4B119.87 (15)
C10—C9—H9A109.4C3B—C4B—N4B118.67 (16)
C8—C9—H9A109.4C6B—C5B—C4B119.53 (15)
C10—C9—H9B109.4C6B—C5B—H5BA120.2
C8—C9—H9B109.4C4B—C5B—H5BA120.2
H9A—C9—H9B108.0C5B—C6B—C1B123.61 (15)
N2—C10—C9109.65 (13)C5B—C6B—N6B116.43 (15)
N2—C10—H10A109.7C1B—C6B—N6B119.96 (15)
C6—C1—C2—C30.0 (2)O1B—C1B—C2B—C3B−168.56 (15)
C7—C1—C2—C3177.62 (15)C6B—C1B—C2B—C3B9.0 (2)
C1—C2—C3—C4−1.2 (2)O1B—C1B—C2B—N2B6.6 (2)
C2—C3—C4—F2−179.33 (15)C6B—C1B—C2B—N2B−175.87 (12)
C2—C3—C4—C51.4 (3)O22B—N2B—C2B—C3B23.4 (2)
F2—C4—C5—C6−179.72 (15)O21B—N2B—C2B—C3B−155.21 (14)
C3—C4—C5—C6−0.5 (3)O22B—N2B—C2B—C1B−152.14 (14)
C4—C5—C6—C1−0.8 (2)O21B—N2B—C2B—C1B29.2 (2)
C2—C1—C6—C51.0 (2)C1B—C2B—C3B—C4B−5.0 (2)
C7—C1—C6—C5−176.53 (15)N2B—C2B—C3B—C4B179.71 (13)
O1—N1—C7—C1−2.5 (3)C2B—C3B—C4B—C5B−2.0 (2)
O1—N1—C7—C8178.61 (14)C2B—C3B—C4B—N4B175.31 (14)
C6—C1—C7—N1−60.4 (2)O41B—N4B—C4B—C5B172.66 (15)
C2—C1—C7—N1122.18 (19)O42B—N4B—C4B—C5B−5.3 (2)
C6—C1—C7—C8118.49 (17)O41B—N4B—C4B—C3B−4.7 (2)
C2—C1—C7—C8−59.0 (2)O42B—N4B—C4B—C3B177.34 (15)
N1—C7—C8—C12−50.3 (2)C3B—C4B—C5B—C6B4.0 (2)
C1—C7—C8—C12130.70 (15)N4B—C4B—C5B—C6B−173.31 (14)
N1—C7—C8—C972.44 (19)C4B—C5B—C6B—C1B0.9 (2)
C1—C7—C8—C9−106.51 (16)C4B—C5B—C6B—N6B−178.96 (14)
C7—C8—C9—C10178.97 (13)O1B—C1B—C6B—C5B170.67 (15)
C12—C8—C9—C10−56.69 (17)C2B—C1B—C6B—C5B−6.8 (2)
C11—N2—C10—C9−57.77 (17)O1B—C1B—C6B—N6B−9.5 (2)
C8—C9—C10—N257.41 (18)C2B—C1B—C6B—N6B173.04 (13)
C10—N2—C11—C1257.29 (17)O62B—N6B—C6B—C5B−178.23 (15)
N2—C11—C12—C8−55.84 (17)O61B—N6B—C6B—C5B3.9 (2)
C7—C8—C12—C11178.80 (13)O62B—N6B—C6B—C1B1.9 (2)
C9—C8—C12—C1155.48 (17)O61B—N6B—C6B—C1B−175.92 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N1i0.842.092.7980 (18)141
N2—H2A···O1B0.922.082.8005 (16)134
N2—H2A···O21B0.922.142.9580 (17)148
N2—H2B···O1Bii0.921.872.7705 (17)164
N2—H2B···O62Bii0.922.563.170 (2)125
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N1i0.842.092.7980 (18)141
N2—H2A⋯O1B0.922.082.8005 (16)134
N2—H2A⋯O21B0.922.142.9580 (17)148
N2—H2B⋯O1Bii0.921.872.7705 (17)164
N2—H2B⋯O62Bii0.922.563.170 (2)125

Symmetry codes: (i) ; (ii) .

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