Literature DB >> 22090846

[2-(1H-Benzimidazol-2-yl-κN)aniline-κN]dichloridozinc.

Naser Eltaher Eltayeb, Siang Guan Teoh, Suchada Chantrapromma, Hoong-Kun Fun.   

Abstract

In the title benzimidazole mononuclear complex, [ZnCl(2)(C(13)H(11)N(3))], the Zn(II) ion is four-coordinated in a distorted tetra-hedral geometry by an imidazole N, an amino N and two Cl atoms. The dihedral angle between the benzimidazole and benzene rings is 9.57 (1)°. In the crystal, mol-ecules are linked by weak N-H⋯Cl hydrogen bonds into layers parallel to the bc plane. π-π inter-actions with centroid-centroid distances in the range 3.4452 (8)-3.8074 (8) Å are also observed.

Entities:  

Year:  2011        PMID: 22090846      PMCID: PMC3212144          DOI: 10.1107/S1600536811026572

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to benzimidazoles and their applications, see: Chassaing et al. (2008 ▶); Podunavac-Kuzmonovic et al. (1999 ▶); Xue et al. (2011 ▶). For related structures, see: Eltayeb et al. (2007 ▶; 2009 ▶; 2011 ▶); Maldonado-Rogado et al. (2007 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

[ZnCl2(C13H11N3)] M = 345.54 Monoclinic, a = 22.0252 (7) Å b = 10.0651 (3) Å c = 15.3676 (6) Å β = 125.244 (2)° V = 2782.32 (18) Å3 Z = 8 Mo Kα radiation μ = 2.14 mm−1 T = 100 K 0.48 × 0.31 × 0.31 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.428, T max = 0.560 50659 measured reflections 7344 independent reflections 5887 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.081 S = 1.02 7344 reflections 172 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026572/rz2622sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026572/rz2622Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C13H11N3)]F(000) = 1392
Mr = 345.54Dx = 1.650 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7344 reflections
a = 22.0252 (7) Åθ = 2.3–37.7°
b = 10.0651 (3) ŵ = 2.14 mm1
c = 15.3676 (6) ÅT = 100 K
β = 125.244 (2)°Block, yellow
V = 2782.32 (18) Å30.48 × 0.31 × 0.31 mm
Z = 8
Bruker APEX DUO CCD area-detector diffractometer7344 independent reflections
Radiation source: sealed tube5887 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 37.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −37→36
Tmin = 0.428, Tmax = 0.560k = −17→17
50659 measured reflectionsl = −25→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0419P)2 + 0.7801P] where P = (Fo2 + 2Fc2)/3
7344 reflections(Δ/σ)max = 0.002
172 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.55 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.057453 (6)0.825871 (11)0.151068 (9)0.03470 (4)
Cl10.094347 (18)0.82859 (2)0.04109 (2)0.04377 (6)
Cl20.121812 (17)0.94430 (3)0.29852 (2)0.04885 (7)
N10.03795 (5)0.63755 (8)0.17124 (6)0.03277 (14)
N2−0.01309 (5)0.43948 (8)0.11361 (7)0.03566 (16)
H1N2−0.04000.37760.07720.043*
N3−0.05430 (5)0.86317 (8)0.06474 (7)0.03630 (16)
H1N3−0.06130.94530.03950.044*
H2N3−0.06060.86610.12030.044*
C10.08602 (5)0.54368 (9)0.24599 (8)0.03401 (16)
C20.15487 (6)0.55968 (12)0.34379 (9)0.0441 (2)
H2A0.17650.64290.36860.053*
C30.18917 (8)0.44533 (15)0.40179 (11)0.0548 (3)
H3A0.23510.45190.46730.066*
C40.15673 (9)0.32000 (14)0.36457 (13)0.0578 (3)
H4A0.18160.24570.40630.069*
C50.08893 (8)0.30296 (12)0.26782 (11)0.0487 (3)
H5A0.06770.21950.24280.058*
C60.05428 (6)0.41848 (9)0.20999 (8)0.03638 (18)
C7−0.02133 (5)0.57180 (8)0.09356 (7)0.03092 (15)
C8−0.08750 (5)0.62967 (9)−0.00210 (7)0.03133 (15)
C9−0.13949 (6)0.54428 (11)−0.08355 (9)0.0409 (2)
H9A−0.13130.4531−0.07510.049*
C10−0.20257 (7)0.59227 (14)−0.17600 (10)0.0501 (3)
H10A−0.23660.5336−0.22860.060*
C11−0.21502 (7)0.72704 (15)−0.19038 (10)0.0556 (3)
H11A−0.25670.7598−0.25350.067*
C12−0.16525 (7)0.81339 (12)−0.11062 (10)0.0478 (3)
H12A−0.17410.9043−0.12030.057*
C13−0.10222 (5)0.76671 (9)−0.01632 (7)0.03314 (16)
U11U22U33U12U13U23
Zn10.03589 (6)0.02529 (5)0.03528 (6)−0.00291 (3)0.01612 (5)−0.00044 (3)
Cl10.05837 (16)0.03021 (11)0.04711 (13)−0.00299 (9)0.03297 (13)0.00024 (8)
Cl20.05149 (15)0.04321 (13)0.04471 (13)−0.01328 (11)0.02364 (11)−0.01315 (10)
N10.0341 (3)0.0252 (3)0.0324 (3)−0.0009 (3)0.0154 (3)0.0028 (2)
N20.0392 (4)0.0235 (3)0.0404 (4)−0.0010 (3)0.0207 (3)0.0010 (3)
N30.0372 (4)0.0252 (3)0.0366 (4)0.0020 (3)0.0156 (3)−0.0006 (3)
C10.0358 (4)0.0293 (4)0.0345 (4)0.0030 (3)0.0188 (3)0.0054 (3)
C20.0390 (5)0.0421 (5)0.0387 (5)0.0026 (4)0.0153 (4)0.0045 (4)
C30.0460 (6)0.0552 (7)0.0454 (6)0.0125 (5)0.0162 (5)0.0139 (5)
C40.0568 (7)0.0461 (7)0.0588 (7)0.0189 (5)0.0266 (6)0.0219 (5)
C50.0541 (6)0.0299 (4)0.0586 (7)0.0101 (4)0.0306 (6)0.0126 (4)
C60.0405 (4)0.0275 (4)0.0413 (4)0.0039 (3)0.0237 (4)0.0055 (3)
C70.0345 (4)0.0238 (3)0.0331 (4)−0.0006 (3)0.0187 (3)0.0011 (3)
C80.0316 (4)0.0280 (3)0.0313 (3)−0.0009 (3)0.0163 (3)−0.0002 (3)
C90.0391 (5)0.0345 (4)0.0406 (5)−0.0050 (4)0.0180 (4)−0.0065 (4)
C100.0374 (5)0.0505 (6)0.0421 (5)−0.0056 (4)0.0112 (4)−0.0100 (5)
C110.0369 (5)0.0533 (7)0.0440 (6)0.0034 (5)0.0045 (4)−0.0008 (5)
C120.0372 (5)0.0385 (5)0.0438 (5)0.0061 (4)0.0095 (4)0.0038 (4)
C130.0307 (4)0.0288 (4)0.0334 (4)0.0015 (3)0.0147 (3)0.0007 (3)
Zn1—N12.0068 (8)C3—H3A0.9300
Zn1—N32.0471 (9)C4—C51.381 (2)
Zn1—Cl22.2041 (3)C4—H4A0.9300
Zn1—Cl12.2589 (3)C5—C61.3933 (14)
N1—C71.3300 (12)C5—H5A0.9300
N1—C11.3890 (12)C7—C81.4668 (12)
N2—C71.3554 (12)C8—C91.4009 (13)
N2—C61.3798 (13)C8—C131.4049 (13)
N2—H1N20.8188C9—C101.3797 (16)
N3—C131.4460 (12)C9—H9A0.9300
N3—H1N30.8877C10—C111.376 (2)
N3—H2N30.9418C10—H10A0.9300
C1—C61.3916 (14)C11—C121.3816 (18)
C1—C21.3978 (15)C11—H11A0.9300
C2—C31.3830 (17)C12—C131.3878 (14)
C2—H2A0.9300C12—H12A0.9300
C3—C41.399 (2)
N1—Zn1—N389.36 (3)C3—C4—H4A118.9
N1—Zn1—Cl2114.83 (3)C4—C5—C6115.92 (12)
N3—Zn1—Cl2112.74 (3)C4—C5—H5A122.0
N1—Zn1—Cl1109.18 (3)C6—C5—H5A122.0
N3—Zn1—Cl1109.27 (3)N2—C6—C1105.68 (8)
Cl2—Zn1—Cl1117.844 (13)N2—C6—C5131.80 (10)
C7—N1—C1106.79 (8)C1—C6—C5122.52 (10)
C7—N1—Zn1121.20 (6)N1—C7—N2110.58 (8)
C1—N1—Zn1129.89 (7)N1—C7—C8126.51 (8)
C7—N2—C6108.33 (8)N2—C7—C8122.91 (8)
C7—N2—H1N2130.1C9—C8—C13117.84 (9)
C6—N2—H1N2121.5C9—C8—C7118.62 (9)
C13—N3—Zn1116.24 (6)C13—C8—C7123.53 (8)
C13—N3—H1N3113.1C10—C9—C8121.57 (10)
Zn1—N3—H1N3107.2C10—C9—H9A119.2
C13—N3—H2N3112.7C8—C9—H9A119.2
Zn1—N3—H2N399.8C11—C10—C9119.95 (10)
H1N3—N3—H2N3106.7C11—C10—H10A120.0
N1—C1—C6108.60 (8)C9—C10—H10A120.0
N1—C1—C2130.32 (9)C10—C11—C12119.67 (11)
C6—C1—C2121.07 (9)C10—C11—H11A120.2
C3—C2—C1116.57 (11)C12—C11—H11A120.2
C3—C2—H2A121.7C11—C12—C13121.13 (11)
C1—C2—H2A121.7C11—C12—H12A119.4
C2—C3—C4121.78 (12)C13—C12—H12A119.4
C2—C3—H3A119.1C12—C13—C8119.79 (9)
C4—C3—H3A119.1C12—C13—N3117.73 (9)
C5—C4—C3122.13 (11)C8—C13—N3122.48 (8)
C5—C4—H4A118.9
N3—Zn1—N1—C737.88 (8)C4—C5—C6—C10.90 (19)
Cl2—Zn1—N1—C7152.76 (7)C1—N1—C7—N2−1.27 (11)
Cl1—Zn1—N1—C7−72.34 (8)Zn1—N1—C7—N2163.70 (7)
N3—Zn1—N1—C1−160.99 (9)C1—N1—C7—C8178.98 (9)
Cl2—Zn1—N1—C1−46.11 (10)Zn1—N1—C7—C8−16.04 (14)
Cl1—Zn1—N1—C188.79 (9)C6—N2—C7—N11.11 (12)
N1—Zn1—N3—C13−47.06 (7)C6—N2—C7—C8−179.14 (9)
Cl2—Zn1—N3—C13−163.85 (6)N1—C7—C8—C9170.17 (10)
Cl1—Zn1—N3—C1363.07 (7)N2—C7—C8—C9−9.55 (15)
C7—N1—C1—C60.96 (11)N1—C7—C8—C13−10.56 (16)
Zn1—N1—C1—C6−162.24 (7)N2—C7—C8—C13169.73 (10)
C7—N1—C1—C2−177.97 (12)C13—C8—C9—C101.27 (17)
Zn1—N1—C1—C218.82 (17)C7—C8—C9—C10−179.41 (11)
N1—C1—C2—C3178.91 (12)C8—C9—C10—C110.9 (2)
C6—C1—C2—C30.09 (18)C9—C10—C11—C12−1.9 (2)
C1—C2—C3—C40.0 (2)C10—C11—C12—C130.7 (2)
C2—C3—C4—C50.3 (3)C11—C12—C13—C81.5 (2)
C3—C4—C5—C6−0.8 (2)C11—C12—C13—N3−177.82 (13)
C7—N2—C6—C1−0.46 (11)C9—C8—C13—C12−2.43 (16)
C7—N2—C6—C5178.79 (13)C7—C8—C13—C12178.29 (11)
N1—C1—C6—N2−0.30 (11)C9—C8—C13—N3176.84 (10)
C2—C1—C6—N2178.75 (10)C7—C8—C13—N3−2.44 (15)
N1—C1—C6—C5−179.64 (11)Zn1—N3—C13—C12−143.37 (10)
C2—C1—C6—C5−0.59 (18)Zn1—N3—C13—C837.35 (12)
C4—C5—C6—N2−178.24 (13)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···Cl1i0.822.563.3503 (9)164
N3—H1N3···Cl1ii0.892.493.3753 (9)174
N3—H2N3···Cl2iii0.942.443.3015 (12)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯Cl1i0.822.563.3503 (9)164
N3—H1N3⋯Cl1ii0.892.493.3753 (9)174
N3—H2N3⋯Cl2iii0.942.443.3015 (12)153

Symmetry codes: (i) ; (ii) ; (iii) .

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