Literature DB >> 22069329

Divergence and convergence in enzyme evolution: parallel evolution of paraoxonases from quorum-quenching lactonases.

Mikael Elias1, Dan S Tawfik.   

Abstract

We discuss the basic features of divergent versus convergent evolution and of the common scenario of parallel evolution. The example of quorum-quenching lactonases is subsequently described. Three different quorum-quenching lactonase families are known, and they belong to three different superfamilies. Their key active-site architectures have converged and are strikingly similar. Curiously, a promiscuous organophosphate hydrolase activity is observed in all three families. We describe the structural and mechanistic features that underline this converged promiscuity and how this promiscuity drove the parallel divergence of organophosphate hydrolases within these lactonase families by either natural or laboratory evolution.

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Year:  2011        PMID: 22069329      PMCID: PMC3249062          DOI: 10.1074/jbc.R111.257329

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  77 in total

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Review 2.  Toward a systems biology perspective on enzyme evolution.

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Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

Review 5.  Evolution of enzyme superfamilies.

Authors:  Margaret E Glasner; John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2006-08-28       Impact factor: 8.822

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Journal:  Nat Chem Biol       Date:  2011-01-09       Impact factor: 15.040

8.  Structural basis for natural lactonase and promiscuous phosphotriesterase activities.

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Journal:  J Mol Biol       Date:  2008-04-16       Impact factor: 5.469

9.  Evolution of enzymatic activity in the enolase superfamily: functional studies of the promiscuous o-succinylbenzoate synthase from Amycolatopsis.

Authors:  Erika A Taylor Ringia; James B Garrett; James B Thoden; Hazel M Holden; Ivan Rayment; John A Gerlt
Journal:  Biochemistry       Date:  2004-01-13       Impact factor: 3.162

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  56 in total

Review 1.  Toward a systems biology perspective on enzyme evolution.

Authors:  Shelley D Copley
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

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Review 3.  Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution.

Authors:  Hans Renata; Z Jane Wang; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-03       Impact factor: 15.336

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Authors:  Yu Wang; Huimin Xu; Laura L Grochowski; Robert H White
Journal:  J Bacteriol       Date:  2014-06-30       Impact factor: 3.490

5.  Evolutionary expansion of the amidohydrolase superfamily in bacteria in response to the synthetic compounds molinate and diuron.

Authors:  Elena Sugrue; Nicholas J Fraser; Davis H Hopkins; Paul D Carr; Jeevan L Khurana; John G Oakeshott; Colin Scott; Colin J Jackson
Journal:  Appl Environ Microbiol       Date:  2015-01-30       Impact factor: 4.792

6.  Multiplicity of Quorum Quenching Enzymes: A Potential Mechanism to Limit Quorum Sensing Bacterial Population.

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Journal:  Indian J Microbiol       Date:  2016-11-23       Impact factor: 2.461

Review 7.  Are there acyl-homoserine lactones within mammalian intestines?

Authors:  Matthew C Swearingen; Anice Sabag-Daigle; Brian M M Ahmer
Journal:  J Bacteriol       Date:  2012-11-09       Impact factor: 3.490

8.  Novel mutation in Cul7 gene in a family diagnosed with 3M syndrome.

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Journal:  J Genet       Date:  2019-03       Impact factor: 1.166

Review 9.  Progress in and promise of bacterial quorum sensing research.

Authors:  Marvin Whiteley; Stephen P Diggle; E Peter Greenberg
Journal:  Nature       Date:  2017-11-15       Impact factor: 49.962

10.  The quorum-quenching lactonase from Geobacillus caldoxylosilyticus: purification, characterization, crystallization and crystallographic analysis.

Authors:  Celine Bergonzi; Michael Schwab; Mikael Elias
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-08-09       Impact factor: 1.056

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